KCC001264A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001264A_C01 KCC001264A_c01
caaaCAGCACTGCGATTTAACGCATACGAAAGCTTGGAAAACTTGGGCACAGCCTTGGGC
CAGCTCCTTGACACAGTCCTTGACAATGCTGCTTTTAGGACTCGTTCTGGCCCTCGCTGG
CCATGTAGCGGCTGCGCCTTCAAGCGCCATGATGGGCACTGGCCACACCGTGGGCTTTGG
CGAGCTCAAGGAAGAATGGCGTGGTGAGGTTGTCCACCTGTCGTGGTCGCCGCGAGCCTT
CCTGCTGAAGAATTTCCTTTCGGATGAGGAGTGCGACTACATCGTCGAGAAGGCTCGCCC
GAAGATGGTCAAGTCTTCTGTGGTTGATAACGAGTCGGGCAAGAGTGTGGACAGCGAGAT
CCGCACCAGCACCGGCACCTGGTTTGCTAAGGGCGAGGACTCTGTCATCTCCAAAATAGA
GAAGCGCGTGGCGCAGGTGACGATGATTCCCCTGGAGAACCATGAGGGGCTGCAGGTTCT
GCACTACCATGACGGTCAGAAGTATGAGCCACACTATGACTACTTCCACGACCCCGTCAA
CGCCGGCCCCGAGCACGGCGGCCAGCGCGTGGTCACGATGCTCATGTACCTGACCACGGT
GGAGGAGGGCGGCGAGACGGTGCTGCCCAACGCGGAGCAGAAGGTGACCGGCGACGGCTG
GTCGGAGTGCGCCAAGCGCGGACTGGCCGTGAAGCCCATCAAGGGCGATGCGCTCATGTT
CTACTCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001264A_C01 KCC001264A_c01
         (729 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Ara...   214  1e-54
ref|NP_564109.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Ar...   214  1e-54
gb|AAL58274.1|AC068923_16 putative prolyl 4-hydroxylase, alpha s...   209  3e-53
dbj|BAB02864.1| prolyl 4-hydroxylase alpha subunit-like protein ...   206  4e-52
ref|NP_566838.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Ar...   206  4e-52

>gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
          Length = 287

 Score =  214 bits (545), Expect = 1e-54
 Identities = 109/194 (56%), Positives = 138/194 (70%), Gaps = 4/194 (2%)
 Frame = +2

Query: 158 TGHTVGFGELKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNES 337
           T  + G G+  ++W  EV  LSW PRAF+  NFLS EEC+Y++  A+P MVKS+VVD+E+
Sbjct: 62  TERSEGLGKRGDQWT-EV--LSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSET 118

Query: 338 GKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHY 517
           GKS DS +RTS+GT+  +G D +I  IEKR+A  T IP ++ EGLQVLHY  GQKYEPHY
Sbjct: 119 GKSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIPADHGEGLQVLHYEAGQKYEPHY 178

Query: 518 DYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGL 685
           DYF D  N   ++GGQR+ TMLMYL+ VEEGGETV P A    +   W    SEC K+GL
Sbjct: 179 DYFVDEFNT--KNGGQRMATMLMYLSDVEEGGETVFPAANMNFSSVPWYNELSECGKKGL 236

Query: 686 AVKPIKGDALMFYS 727
           +VKP  GDAL+F+S
Sbjct: 237 SVKPRMGDALLFWS 250

>ref|NP_564109.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana]
           gi|25513547|pir||D86336 F14O10.12 protein - Arabidopsis
           thaliana gi|9558598|gb|AAF88161.1|AC026234_12 Contains
           similarity to a prolyl 4-hydroxylase alpha subunit
           protein from Gallus gallus gi|212530. [Arabidopsis
           thaliana]
          Length = 287

 Score =  214 bits (545), Expect = 1e-54
 Identities = 109/194 (56%), Positives = 138/194 (70%), Gaps = 4/194 (2%)
 Frame = +2

Query: 158 TGHTVGFGELKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNES 337
           T  + G G+  ++W  EV  LSW PRAF+  NFLS EEC+Y++  A+P MVKS+VVD+E+
Sbjct: 62  TERSEGLGKRGDQWT-EV--LSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSET 118

Query: 338 GKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHY 517
           GKS DS +RTS+GT+  +G D +I  IEKR+A  T IP ++ EGLQVLHY  GQKYEPHY
Sbjct: 119 GKSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIPADHGEGLQVLHYEAGQKYEPHY 178

Query: 518 DYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGL 685
           DYF D  N   ++GGQR+ TMLMYL+ VEEGGETV P A    +   W    SEC K+GL
Sbjct: 179 DYFVDEFNT--KNGGQRMATMLMYLSDVEEGGETVFPAANMNFSSVPWYNELSECGKKGL 236

Query: 686 AVKPIKGDALMFYS 727
           +VKP  GDAL+F+S
Sbjct: 237 SVKPRMGDALLFWS 250

>gb|AAL58274.1|AC068923_16 putative prolyl 4-hydroxylase, alpha subunit [Oryza sativa
           (japonica cultivar-group)] gi|31432872|gb|AAP54448.1|
           putative prolyl 4-hydroxylase, alpha subunit [Oryza
           sativa (japonica cultivar-group)]
          Length = 343

 Score =  209 bits (533), Expect = 3e-53
 Identities = 108/199 (54%), Positives = 140/199 (70%), Gaps = 4/199 (2%)
 Frame = +2

Query: 143 SAMMGTGHTVGFGELKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSV 322
           SA   +G  +  GE  E W  EV  LSW PRAFL  NFLS EEC+Y++  A+P M KS+V
Sbjct: 91  SAAFESGLEMRGGEKGEPWT-EV--LSWEPRAFLYHNFLSKEECEYLISLAKPHMKKSTV 147

Query: 323 VDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQK 502
           VD  +G S DS +RTS+G +  +G+D +I  IEKR++  T IP+EN EGLQVLHY  GQK
Sbjct: 148 VDASTGGSKDSRVRTSSGMFLGRGQDKIIRTIEKRISDYTFIPVENGEGLQVLHYEVGQK 207

Query: 503 YEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SEC 670
           YEPH+DYFHD  N   ++GGQR+ T+LMYL+ VEEGGET+ P+++   +   +    SEC
Sbjct: 208 YEPHFDYFHDEFNT--KNGGQRIATLLMYLSDVEEGGETIFPSSKANSSSSPFYNELSEC 265

Query: 671 AKRGLAVKPIKGDALMFYS 727
           AK+GLAVKP  GDAL+F+S
Sbjct: 266 AKKGLAVKPKMGDALLFWS 284

>dbj|BAB02864.1| prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis
           thaliana]
          Length = 332

 Score =  206 bits (523), Expect = 4e-52
 Identities = 96/176 (54%), Positives = 131/176 (73%), Gaps = 3/176 (1%)
 Frame = +2

Query: 209 VVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFA 388
           V  LSW+PR FL + FLSDEECD+ ++ A+ K+ KS V DN+SG+SV+SE+RTS+G + +
Sbjct: 72  VTQLSWTPRVFLYEGFLSDEECDHFIKLAKGKLEKSMVADNDSGESVESEVRTSSGMFLS 131

Query: 389 KGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQR 568
           K +D ++S +E ++A  T +P EN E +Q+LHY +GQKYEPH+DYFHD  N   E GG R
Sbjct: 132 KRQDDIVSNVEAKLAAWTFLPEENGESMQILHYENGQKYEPHFDYFHDQANL--ELGGHR 189

Query: 569 VVTMLMYLTTVEEGGETVLPNAEQKVT---GDGWSECAKRGLAVKPIKGDALMFYS 727
           + T+LMYL+ VE+GGETV P  + K T    D W+ECAK+G AVKP KGDAL+F++
Sbjct: 190 IATVLMYLSNVEKGGETVFPMWKGKATQLKDDSWTECAKQGYAVKPRKGDALLFFN 245

>ref|NP_566838.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana]
           gi|21617881|gb|AAM66931.1| prolyl 4-hydroxylase,
           putative [Arabidopsis thaliana]
          Length = 316

 Score =  206 bits (523), Expect = 4e-52
 Identities = 96/176 (54%), Positives = 131/176 (73%), Gaps = 3/176 (1%)
 Frame = +2

Query: 209 VVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFA 388
           V  LSW+PR FL + FLSDEECD+ ++ A+ K+ KS V DN+SG+SV+SE+RTS+G + +
Sbjct: 56  VTQLSWTPRVFLYEGFLSDEECDHFIKLAKGKLEKSMVADNDSGESVESEVRTSSGMFLS 115

Query: 389 KGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQR 568
           K +D ++S +E ++A  T +P EN E +Q+LHY +GQKYEPH+DYFHD  N   E GG R
Sbjct: 116 KRQDDIVSNVEAKLAAWTFLPEENGESMQILHYENGQKYEPHFDYFHDQANL--ELGGHR 173

Query: 569 VVTMLMYLTTVEEGGETVLPNAEQKVT---GDGWSECAKRGLAVKPIKGDALMFYS 727
           + T+LMYL+ VE+GGETV P  + K T    D W+ECAK+G AVKP KGDAL+F++
Sbjct: 174 IATVLMYLSNVEKGGETVFPMWKGKATQLKDDSWTECAKQGYAVKPRKGDALLFFN 229



EST assemble image


clone accession position
1 LCL021c07_r AV627111 1 288
2 LC081g06_r AV624727 5 429
3 LC003a02_r AV619040 10 536
4 HC100c07_r AV639508 21 442
5 CM035a10_r AV388717 21 503
6 CM058h09_r AV390406 33 651
7 HC031g11_r AV634315 36 447
8 MXL021c02_r BP094322 81 395
9 CM031g06_r AV388327 133 474
10 HC031d01_r AV634276 234 729




Chlamydomonas reinhardtii
Kazusa DNA Research Institute