KCC001244A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001244A_C01 KCC001244A_c01
gcaccagccgcgagctcgagtgctacaagAGGTGGGTGGCGCTGCTGGAGGAGGAGATGT
TCCTGCAGGGCGACAAGGAGCGCGAGCTGGGCATCTCCATCAGCCCGCTCTGCGACCGCA
CCAAAGTGGGCGTCAGCAAGAGCCAGACCGGCTTCTTCGATTTCGTGGCGCTGCCACTGG
TGCACGCCATGTCGTCGGCGTTCCCGGGCGCGGCGCGCATGATGCGCCACTTCCTAGCGA
ACTACAACCACTGGAAAGCGGTCGCACCTGCTGCTGCGCCGACGCCCCCGGCCGCGGCGC
ATAAGGCGGACTCGGAAACCAAGCCAGCTGTGGCGGCGGCGGAGCTGGCGCCGTCGTCAG
GTCGGCCAACGTTGGCAGGGGCAGTGGTGGAGGTGCCGGCCGCGTTGGCCTCGGCGCCCA
CGGCGCTGGCGCCCATGACCAAGGCCATGGCCAAGCTGCGGTCGATGGGGTCCAGGCGGC
TGGTGGCAGCCGAGCCGCCGGCAGCAGCCGATGCTGCGGCGAACGGGCATGCGGncagca
aagccgatgcggggcc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001244A_C01 KCC001244A_c01
         (556 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_726846.1| dunce CG32498-PO [Drosophila melanogaster] gi|2...    82  9e-16
gb|AAM51007.1| RE53611p [Drosophila melanogaster]                      82  9e-16
ref|NP_726849.1| dunce CG32498-PI [Drosophila melanogaster] gi|2...    82  9e-16
ref|NP_726850.1| dunce CG32498-PC [Drosophila melanogaster] gi|2...    82  9e-16
ref|NP_726856.1| dunce CG32498-PN [Drosophila melanogaster] gi|2...    82  9e-16

>ref|NP_726846.1| dunce CG32498-PO [Drosophila melanogaster] gi|22833009|gb|AAN09599.1|
            CG32498-PO [Drosophila melanogaster]
          Length = 1209

 Score = 82.4 bits (202), Expect(2) = 9e-16
 Identities = 42/96 (43%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
 Frame = +3

Query: 6    SRELECYKRWVALLEEEMFLQGDKERELGISISPLCDRTKVGVSKSQTGFFDFVALPLVH 185
            ++ L  YKRWVALL EE FLQGDKERE G+ ISP+CDR    + KSQ GF D++  PL  
Sbjct: 1034 TKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWE 1093

Query: 186  AMSS-AFPGAARMMRHFLANYNHWKAVAPAAAPTPP 290
              +    P A  ++     N ++++++ P   P+PP
Sbjct: 1094 TWADLVHPDAQDILDTLEENRDYYQSMIP---PSPP 1126

 Score = 22.3 bits (46), Expect(2) = 9e-16
 Identities = 10/29 (34%), Positives = 12/29 (40%)
 Frame = +2

Query: 314  GNQASCGGGGAGAVVRSANVGRGSGGGAG 400
            G   + G  G  A    +  G G GGG G
Sbjct: 1164 GESTTTGTTGTTAASALSGAGGGGGGGGG 1192

>gb|AAM51007.1| RE53611p [Drosophila melanogaster]
          Length = 1209

 Score = 82.4 bits (202), Expect(2) = 9e-16
 Identities = 42/96 (43%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
 Frame = +3

Query: 6    SRELECYKRWVALLEEEMFLQGDKERELGISISPLCDRTKVGVSKSQTGFFDFVALPLVH 185
            ++ L  YKRWVALL EE FLQGDKERE G+ ISP+CDR    + KSQ GF D++  PL  
Sbjct: 1034 TKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWE 1093

Query: 186  AMSS-AFPGAARMMRHFLANYNHWKAVAPAAAPTPP 290
              +    P A  ++     N ++++++ P   P+PP
Sbjct: 1094 TWADLVHPDAQDILDTLEENRDYYQSMIP---PSPP 1126

 Score = 22.3 bits (46), Expect(2) = 9e-16
 Identities = 10/29 (34%), Positives = 12/29 (40%)
 Frame = +2

Query: 314  GNQASCGGGGAGAVVRSANVGRGSGGGAG 400
            G   + G  G  A    +  G G GGG G
Sbjct: 1164 GESTTTGTTGTTAASALSGAGGGGGGGGG 1192

>ref|NP_726849.1| dunce CG32498-PI [Drosophila melanogaster] gi|22833012|gb|AAN09600.1|
            CG32498-PI [Drosophila melanogaster]
          Length = 1070

 Score = 82.4 bits (202), Expect(2) = 9e-16
 Identities = 42/96 (43%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
 Frame = +3

Query: 6    SRELECYKRWVALLEEEMFLQGDKERELGISISPLCDRTKVGVSKSQTGFFDFVALPLVH 185
            ++ L  YKRWVALL EE FLQGDKERE G+ ISP+CDR    + KSQ GF D++  PL  
Sbjct: 895  TKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWE 954

Query: 186  AMSS-AFPGAARMMRHFLANYNHWKAVAPAAAPTPP 290
              +    P A  ++     N ++++++ P   P+PP
Sbjct: 955  TWADLVHPDAQDILDTLEENRDYYQSMIP---PSPP 987

 Score = 22.3 bits (46), Expect(2) = 9e-16
 Identities = 10/29 (34%), Positives = 12/29 (40%)
 Frame = +2

Query: 314  GNQASCGGGGAGAVVRSANVGRGSGGGAG 400
            G   + G  G  A    +  G G GGG G
Sbjct: 1025 GESTTTGTTGTTAASALSGAGGGGGGGGG 1053

>ref|NP_726850.1| dunce CG32498-PC [Drosophila melanogaster] gi|22833013|gb|AAF45861.2|
            CG32498-PC [Drosophila melanogaster]
          Length = 1057

 Score = 82.4 bits (202), Expect(2) = 9e-16
 Identities = 42/96 (43%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
 Frame = +3

Query: 6    SRELECYKRWVALLEEEMFLQGDKERELGISISPLCDRTKVGVSKSQTGFFDFVALPLVH 185
            ++ L  YKRWVALL EE FLQGDKERE G+ ISP+CDR    + KSQ GF D++  PL  
Sbjct: 882  TKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWE 941

Query: 186  AMSS-AFPGAARMMRHFLANYNHWKAVAPAAAPTPP 290
              +    P A  ++     N ++++++ P   P+PP
Sbjct: 942  TWADLVHPDAQDILDTLEENRDYYQSMIP---PSPP 974

 Score = 22.3 bits (46), Expect(2) = 9e-16
 Identities = 10/29 (34%), Positives = 12/29 (40%)
 Frame = +2

Query: 314  GNQASCGGGGAGAVVRSANVGRGSGGGAG 400
            G   + G  G  A    +  G G GGG G
Sbjct: 1012 GESTTTGTTGTTAASALSGAGGGGGGGGG 1040

>ref|NP_726856.1| dunce CG32498-PN [Drosophila melanogaster] gi|22833019|gb|AAF45863.2|
            CG32498-PN [Drosophila melanogaster]
          Length = 983

 Score = 82.4 bits (202), Expect(2) = 9e-16
 Identities = 42/96 (43%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
 Frame = +3

Query: 6    SRELECYKRWVALLEEEMFLQGDKERELGISISPLCDRTKVGVSKSQTGFFDFVALPLVH 185
            ++ L  YKRWVALL EE FLQGDKERE G+ ISP+CDR    + KSQ GF D++  PL  
Sbjct: 808  TKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWE 867

Query: 186  AMSS-AFPGAARMMRHFLANYNHWKAVAPAAAPTPP 290
              +    P A  ++     N ++++++ P   P+PP
Sbjct: 868  TWADLVHPDAQDILDTLEENRDYYQSMIP---PSPP 900

 Score = 22.3 bits (46), Expect(2) = 9e-16
 Identities = 10/29 (34%), Positives = 12/29 (40%)
 Frame = +2

Query: 314  GNQASCGGGGAGAVVRSANVGRGSGGGAG 400
            G   + G  G  A    +  G G GGG G
Sbjct: 938  GESTTTGTTGTTAASALSGAGGGGGGGGG 966



EST assemble image


clone accession position
1 CM029f02_r AV389312 1 604
2 LCL010a11_r AV626491 11 255




Chlamydomonas reinhardtii
Kazusa DNA Research Institute