KCC001242A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001242A_C01 KCC001242A_c01
cactccccctctgccgacgcGGTGCCCATGGCGCGCACTGGGCTGCAGAGCAGTGTGCTG
ATGCATAGCCAGGACCGCAACGCCTTCGACGTCATCTTTGGCGGCCACCTGCTGCGGCTG
GCCTACGAGCACGCCTTCGCCACCGCGGCGCTGCACGCGGGCGAGTACTGCGACCCCCTG
TCCATGGACGACGTGGCGTTCCTGCTGCCCGTGCCCATTGGCACCTTGCTGCGGCTGACC
GGCCAGGTGGTGTATGTGGAGGGGCCGGTGGTGCGGGTGCACGTGCGCGCCACCAAGCTG
GAGCCGGGCGCGCCGGAGCAGAGCGTCGTCACCAACGTGTTCAGTTTTGCGTTCGTGAGC
AAGAGCGGGGGCGTGCGGCGGGTGGTGCCTGAGACCATGGTGGAGGCAATGGAGTACCTG
ATGGGCTACCGGCAGCACGTGATGGACGAGACCAGCAGGATGGTGGCAGAGGACCGTGTC
AGGCCCAAGTTGTGATCGTGAGCAGTGATGGGGACGGCCTCGCATCAGTGTTGTTCCGTG
CAGCGGCGTGCAGCTGTGATGATGCTGTGGCCGCGACAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001242A_C01 KCC001242A_c01
         (579 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_073727.1| acyl-Coenzyme A thioesterase 3, mitochondrial; ...    90  2e-17
ref|NP_036464.1| Mitochondrial Acyl-CoA Thioesterase [Homo sapie...    89  3e-17
gb|AAG44475.1|AF241787_1 CGI16-iso [Homo sapiens]                      89  3e-17
ref|NP_062710.2| acyl-Coenzyme A thioesterase 2, mitochondrial; ...    88  1e-16
dbj|BAA79193.1| U8 [Mus musculus]                                      88  1e-16

>ref|NP_073727.1| acyl-Coenzyme A thioesterase 3, mitochondrial; MT-ACT48,p48 [Mus
           musculus] gi|5102776|emb|CAB45255.1| acyl-CoA
           thioesterase [Mus musculus]
          Length = 439

 Score = 90.1 bits (222), Expect = 2e-17
 Identities = 56/138 (40%), Positives = 81/138 (58%)
 Frame = +1

Query: 19  AVPMARTGLQSSVLMHSQDRNAFDVIFGGHLLRLAYEHAFATAALHAGEYCDPLSMDDVA 198
           AV M  T L+S  + H Q+RN F+ IFGG L+R AYE A+ATA    G     +++DD+ 
Sbjct: 285 AVWMEDTKLKSLDICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIM 344

Query: 199 FLLPVPIGTLLRLTGQVVYVEGPVVRVHVRATKLEPGAPEQSVVTNVFSFAFVSKSGGVR 378
           F  PV +G+LL L+ QV + +G  ++V V +      + E  + TNVF F F+S+   V 
Sbjct: 345 FQKPVEVGSLLFLSSQVCFTQGNYIQVRVHSEVFSLDSREH-MTTNVFHFTFMSEK-EVP 402

Query: 379 RVVPETMVEAMEYLMGYR 432
            + P+T  E+M YL G R
Sbjct: 403 LIFPKTYGESMLYLDGQR 420

>ref|NP_036464.1| Mitochondrial Acyl-CoA Thioesterase [Homo sapiens]
           gi|12229616|sp|Q9Y305|CG16_HUMAN Putative acyl-CoA
           thioester hydrolase CGI-16
           gi|4680671|gb|AAD27725.1|AF132950_1 CGI-16 protein [Homo
           sapiens]
          Length = 406

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 58/142 (40%), Positives = 82/142 (56%), Gaps = 2/142 (1%)
 Frame = +1

Query: 13  ADAVPMARTGLQSSVLMHSQDRNAFDVIFGGHLLRLAYEHAFATAALHAGEYCDPLSMDD 192
           ++AV M  + L+S  + H Q+RN F+ IFGG L+R AYE A+ATA    G     +++DD
Sbjct: 250 SNAVWMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDD 309

Query: 193 VAFLLPVPIGTLLRLTGQVVYVEGPV--VRVHVRATKLEPGAPEQSVVTNVFSFAFVSKS 366
           + F  PV +G+LL L+ QV + +     VRVH     L+    +Q   TNVF F F+S+ 
Sbjct: 310 IMFQKPVEVGSLLFLSSQVCFTQNNYIQVRVHSEVASLQ---EKQHTTTNVFHFTFMSEK 366

Query: 367 GGVRRVVPETMVEAMEYLMGYR 432
             V  V P+T  E+M YL G R
Sbjct: 367 -EVPLVFPKTYGESMLYLDGQR 387

>gb|AAG44475.1|AF241787_1 CGI16-iso [Homo sapiens]
          Length = 189

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 58/142 (40%), Positives = 82/142 (56%), Gaps = 2/142 (1%)
 Frame = +1

Query: 13  ADAVPMARTGLQSSVLMHSQDRNAFDVIFGGHLLRLAYEHAFATAALHAGEYCDPLSMDD 192
           ++AV M  + L+S  + H Q+RN F+ IFGG L+R AYE A+ATA    G     +++DD
Sbjct: 33  SNAVWMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDD 92

Query: 193 VAFLLPVPIGTLLRLTGQVVYVEGPV--VRVHVRATKLEPGAPEQSVVTNVFSFAFVSKS 366
           + F  PV +G+LL L+ QV + +     VRVH     L+    +Q   TNVF F F+S+ 
Sbjct: 93  IMFQKPVEVGSLLFLSSQVCFTQNNYIQVRVHSEVASLQ---EKQHTTTNVFHFTFMSEK 149

Query: 367 GGVRRVVPETMVEAMEYLMGYR 432
             V  V P+T  E+M YL G R
Sbjct: 150 -EVPLVFPKTYGESMLYLDGQR 170

>ref|NP_062710.2| acyl-Coenzyme A thioesterase 2, mitochondrial; mitochondrial
           acyl-CoA thioesterase [Mus musculus]
           gi|12643842|sp|Q9R0X4|AC48_MOUSE 48 kDa acyl-CoA
           thioester hydrolase, mitochondrial precursor (p48)
           (Mt-ACT48) (Protein U8) gi|5102774|emb|CAB45192.1|
           acyl-CoA thioesterase [Mus musculus]
           gi|12833211|dbj|BAB22437.1| unnamed protein product [Mus
           musculus] gi|12844686|dbj|BAB26460.1| unnamed protein
           product [Mus musculus] gi|18256214|gb|AAH21763.1|
           Acyl-Coenzyme A thioesterase 2, mitochondrial [Mus
           musculus]
          Length = 439

 Score = 87.8 bits (216), Expect = 1e-16
 Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
 Frame = +1

Query: 19  AVPMARTGLQSSVLMHSQDRNAFDVIFGGHLLRLAYEHAFATAALHAGEYCDPLSMDDVA 198
           AV M  T L+S  + H Q+RN F+ IFGG L+R AYE A+ATA    G     +++DD+ 
Sbjct: 285 AVWMEDTKLKSLDICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIM 344

Query: 199 FLLPVPIGTLLRLTGQVVYVEGPV--VRVHVRATKLEPGAPEQSVVTNVFSFAFVSKSGG 372
           F  PV +G+LL L+ QV + +     VRVH   + L+     + + TNVF F F+S+   
Sbjct: 345 FQKPVEVGSLLFLSSQVCFTQDNYIQVRVHSEVSSLD---SREHMTTNVFHFTFMSEK-E 400

Query: 373 VRRVVPETMVEAMEYLMGYR 432
           V  + P+T  E+M YL G R
Sbjct: 401 VPLIFPKTYGESMLYLDGQR 420

>dbj|BAA79193.1| U8 [Mus musculus]
          Length = 439

 Score = 87.8 bits (216), Expect = 1e-16
 Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
 Frame = +1

Query: 19  AVPMARTGLQSSVLMHSQDRNAFDVIFGGHLLRLAYEHAFATAALHAGEYCDPLSMDDVA 198
           AV M  T L+S  + H Q+RN F+ IFGG L+R AYE A+ATA    G     +++DD+ 
Sbjct: 285 AVWMEDTKLKSLDICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIM 344

Query: 199 FLLPVPIGTLLRLTGQVVYVEGPV--VRVHVRATKLEPGAPEQSVVTNVFSFAFVSKSGG 372
           F  PV +G+LL L+ QV + +     VRVH   + L+     + + TNVF F F+S+   
Sbjct: 345 FQKPVEVGSLLFLSSQVCFTQDNYIQVRVHSEVSSLD---SREHMTTNVFHFTFMSEK-E 400

Query: 373 VRRVVPETMVEAMEYLMGYR 432
           V  + P+T  E+M YL G R
Sbjct: 401 VPLIFPKTYGESMLYLDGQR 420



EST assemble image


clone accession position
1 HC081f09_r AV638080 1 423
2 CM029d11_r AV389370 14 579




Chlamydomonas reinhardtii
Kazusa DNA Research Institute