Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001238A_C01 KCC001238A_c01
(729 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_034065.1| procollagen, type VI, alpha 3 [Mus musculus] gi... 50 3e-05
gb|AAH57903.1| Unknown (protein for MGC:65454) [Mus musculus] 47 4e-04
gb|AAH05491.1| Col6a3 protein [Mus musculus] 47 4e-04
gb|AAH49881.1| Similar to collagen, type VI, alpha 3 [Mus musculus] 47 4e-04
ref|XP_327900.1| hypothetical protein [Neurospora crassa] gi|289... 40 0.028
>ref|NP_034065.1| procollagen, type VI, alpha 3 [Mus musculus]
gi|3236370|gb|AAC23667.1| type VI collagen alpha 3
subunit [Mus musculus]
Length = 2657
Score = 50.4 bits (119), Expect = 3e-05
Identities = 67/244 (27%), Positives = 97/244 (39%), Gaps = 14/244 (5%)
Frame = -1
Query: 696 SGVTDGRQQFTGPSGGRAHTAIRALA*LPFLSLRGSNIVRPCSLTARVRYTSAQPQASQL 517
+GV G +Q P HTA +L +++ SN +P TA V T A+P ++
Sbjct: 2237 NGVKFGHKQINPP-----HTANSSLTSKVVTTIKPSNSSKP---TAIVNLTPAKPAPAR- 2287
Query: 516 PNVLLPVNIRPQPVAP-DPWPKPSLPSSCSRICG-PV----AGADNNTIT*TPSKII*LP 355
P PV +P P P P P+ P+S + PV A A ++ P+K
Sbjct: 2288 PAPAQPVLAKPDPAKPAQARPAPAKPASAKLVPPQPVHVQPAPAQTASVRPAPAKP---- 2343
Query: 354 RI*APREPAQPHRHPCRHACCQQPCPP----AQPLHTACAFTCTHLAAGCGAQGQPWHLL 187
AP +PA P + A QP PP A+P+ A A AQ P +
Sbjct: 2344 ---APPQPAAAKPVPAKPAVPAQPAPPQPAAAKPVPAKPAVP----AQPAAAQPMPAQPV 2396
Query: 186 PDRA----PTVARRPREPGPLGQKCYHAPKTHATTLYPPSTMPAQT*RASGRSVRNLATM 19
++ P A +P P+ A A P + PA T +VR +AT
Sbjct: 2397 LTKSAAVKPASANKPVAAKPVATNTATATARPALAAKPAAAKPAATRDPLAAAVRPVATK 2456
Query: 18 PQIP 7
P+ P
Sbjct: 2457 PEAP 2460
>gb|AAH57903.1| Unknown (protein for MGC:65454) [Mus musculus]
Length = 425
Score = 46.6 bits (109), Expect = 4e-04
Identities = 66/244 (27%), Positives = 96/244 (39%), Gaps = 14/244 (5%)
Frame = -1
Query: 696 SGVTDGRQQFTGPSGGRAHTAIRALA*LPFLSLRGSNIVRPCSLTARVRYTSAQPQASQL 517
+GV G +Q P HTA +L +++ +P TA V T A+P ++
Sbjct: 6 NGVKFGHKQINPP-----HTANSSLTSKVVTTMKPVTTTKP---TAIVNLTPAKPAPAR- 56
Query: 516 PNVLLPVNIRPQPVAP-DPWPKPSLPSSCSRICG-PV----AGADNNTIT*TPSKII*LP 355
P PV +P P P P P+ P+S + PV A A ++ P+K
Sbjct: 57 PAPAQPVLAKPDPAKPAQARPAPAKPASAKLVPPQPVHVQPAPAQTASVRPAPAKP---- 112
Query: 354 RI*APREPAQPHRHPCRHACCQQPCPP----AQPLHTACAFTCTHLAAGCGAQGQPWHLL 187
AP +PA P + A QP PP A+P+ A A AQ P +
Sbjct: 113 ---APPQPAAAKPVPAKPAVPAQPAPPQPAAAKPVPAKPAVP----AQPAAAQPMPAQPV 165
Query: 186 PDRA----PTVARRPREPGPLGQKCYHAPKTHATTLYPPSTMPAQT*RASGRSVRNLATM 19
++ P A +P P+ A A P + PA T R +VR +AT
Sbjct: 166 LTKSAAVKPASANKPVAAKPVATNTATATARPALAAKPAAAKPAAT-RPLAAAVRPVATK 224
Query: 18 PQIP 7
P+ P
Sbjct: 225 PEAP 228
>gb|AAH05491.1| Col6a3 protein [Mus musculus]
Length = 616
Score = 46.6 bits (109), Expect = 4e-04
Identities = 66/244 (27%), Positives = 96/244 (39%), Gaps = 14/244 (5%)
Frame = -1
Query: 696 SGVTDGRQQFTGPSGGRAHTAIRALA*LPFLSLRGSNIVRPCSLTARVRYTSAQPQASQL 517
+GV G +Q P HTA +L +++ +P TA V T A+P ++
Sbjct: 197 NGVKFGHKQINPP-----HTANSSLTSKVVTTMKPVTTTKP---TAIVNLTPAKPAPAR- 247
Query: 516 PNVLLPVNIRPQPVAP-DPWPKPSLPSSCSRICG-PV----AGADNNTIT*TPSKII*LP 355
P PV +P P P P P+ P+S + PV A A ++ P+K
Sbjct: 248 PAPAQPVLAKPDPAKPAQARPAPAKPASAKLVPPQPVHVQPAPAQTASVRPAPAKP---- 303
Query: 354 RI*APREPAQPHRHPCRHACCQQPCPP----AQPLHTACAFTCTHLAAGCGAQGQPWHLL 187
AP +PA P + A QP PP A+P+ A A AQ P +
Sbjct: 304 ---APPQPAAAKPVPAKPAVPAQPAPPQPAAAKPVPAKPAVP----AQPAAAQPMPAQPV 356
Query: 186 PDRA----PTVARRPREPGPLGQKCYHAPKTHATTLYPPSTMPAQT*RASGRSVRNLATM 19
++ P A +P P+ A A P + PA T R +VR +AT
Sbjct: 357 LTKSAAVKPASANKPVAAKPVATNTATATARPALAAKPAAAKPAAT-RPLAAAVRPVATK 415
Query: 18 PQIP 7
P+ P
Sbjct: 416 PEAP 419
>gb|AAH49881.1| Similar to collagen, type VI, alpha 3 [Mus musculus]
Length = 429
Score = 46.6 bits (109), Expect = 4e-04
Identities = 66/244 (27%), Positives = 96/244 (39%), Gaps = 14/244 (5%)
Frame = -1
Query: 696 SGVTDGRQQFTGPSGGRAHTAIRALA*LPFLSLRGSNIVRPCSLTARVRYTSAQPQASQL 517
+GV G +Q P HTA +L +++ +P TA V T A+P ++
Sbjct: 10 NGVKFGHKQINPP-----HTANSSLTSKVVTTMKPVTTTKP---TAIVNLTPAKPAPAR- 60
Query: 516 PNVLLPVNIRPQPVAP-DPWPKPSLPSSCSRICG-PV----AGADNNTIT*TPSKII*LP 355
P PV +P P P P P+ P+S + PV A A ++ P+K
Sbjct: 61 PAPAQPVLAKPDPAKPAQARPAPAKPASAKLVPPQPVHVQPAPAQTASVRPAPAKP---- 116
Query: 354 RI*APREPAQPHRHPCRHACCQQPCPP----AQPLHTACAFTCTHLAAGCGAQGQPWHLL 187
AP +PA P + A QP PP A+P+ A A AQ P +
Sbjct: 117 ---APPQPAAAKPVPAKPAVPAQPAPPQPAAAKPVPAKPAVP----AQPAAAQPMPAQPV 169
Query: 186 PDRA----PTVARRPREPGPLGQKCYHAPKTHATTLYPPSTMPAQT*RASGRSVRNLATM 19
++ P A +P P+ A A P + PA T R +VR +AT
Sbjct: 170 LTKSAAVKPASANKPVAAKPVATNTATATARPALAAKPAAAKPAAT-RPLAAAVRPVATK 228
Query: 18 PQIP 7
P+ P
Sbjct: 229 PEAP 232
>ref|XP_327900.1| hypothetical protein [Neurospora crassa] gi|28916871|gb|EAA26613.1|
hypothetical protein [Neurospora crassa]
gi|28950320|emb|CAD70945.1| conserved hypothetical
protein [Neurospora crassa]
Length = 1325
Score = 40.4 bits (93), Expect = 0.028
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -1
Query: 546 TSAQPQASQLPNVLLPVNIRPQPV---APDPWPKPSLPSSCSRICGPVAGADNNTIT*TP 376
TSAQPQA ++P+ RP+PV A P KP + +S PV G+ +
Sbjct: 707 TSAQPQAPVPATTVMPIPERPEPVQSKAAQPASKP-VSNSSVPASDPVVGSTGTSSRAVQ 765
Query: 375 SKII*LPRI*APREPAQPHRHP 310
S+ R AP+EP++P P
Sbjct: 766 SEASARARAPAPQEPSEPEEPP 787
