KCC001212A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001212A_C01 KCC001212A_c01
gcacgaggacaccaacaacaagacaaattgacctgaccagtgcgcgtctgtcctgcagtg
tcctgttggtggttggtgcaACTCGAGTCGGAGTCAGTGGAAATGGGATGGGATACTTGG
TGAGAGCGTGGCAAGGGTCGTGCGTGCCATGCGCGAGTGTGTGTTTTGTTTATCGGTGAT
GTGCGTCGTGGGGCTTTGTTAACCCCCCTTCAGATTTTTTTTGAAGATGTCTGGACGGGT
GGCGTTGACAGTCCTCAGGAGCGAGCTCGGCGGCTGGGCCAGACGCGCTTAGTGCAGTGT
GGTCATGCGAAATGCGAACATAAAGTCTGTCCGGAGATTCACCCGGCGAACGAACCATGG
ACCCTGGACCATGCATTTTACGGGTAGATGGGTAGGCATTCAGTACTGTCGCAGCGCTTA
CAGGTCTAGATGGGAGTAGCCCCGCGATGGAATGACAGGAGCATCTGGCTGGACGTGGAA
ATGACGAGGTGTGTTGGGGGATGATACTTGGTGAGAGCGTGGCAAGGGTCGTGCGTGCCA
TGCGCGAGTGTGTGTTTTGTTTATCGGTGATGTGCGTCGTGGGGCTTTGTTAACCCCCCT
TCAGATTTTTTTTGAAGATGTCTGGACGGGTGGCGTTGACAGTCCTCAGGAGCGAGCTCG
GCGGCTGGGCCAGACGCGCTTAGTGCAGTGTGGTCATGCGAAATGCGAACATAAAGTCTG
TCCGGAGATTCACCCGGCGAACGAACCATGGACCCTGGACCATGCATTTTACGGGTAGAT
GGGTAGGCATTCAGTACTGTCGCAGCGCTTACAGGTCTAGATGGGAGTAGCCCCGCGATG
GAATGACAGGAGCATCTGGCTGGACGTGGAAATGACGAGGTGTGTTGGGGGATGACTCAA
TACCATAGGTTGGCGCAGGCTGGCGTGTCTGTACTATGTCGTGATTCAAGATGGTGTGCC
GCTGAGCGGAATGGGCACAGGATGCAGGGAAACGGATAGTGCGGTGCACGGGCAGAATTG
GTGGTCTGCATCACGCGTTGACTAGGACGCGAGACGCGGGATAGGATGGTCGCTAAGATG
TGTACGAGTAGGCCTGGACGGGGGCACACGACGGCGCAGGTCTCTCCGCCGTGCGACACA
ATGCGCGGTGGGAGGCGATGCGGAGGACATTGGCACACGCGCCAGCACATACGCACATAT
ACGGATGTGCTTGCGGTGCGTTTAATGAGGATGACAGGGTATTGTGGGGGGTTGCAGAAC
CCAATTCTTTTTTGCCGACGTATGCAGCTCGCGCCCCTAAGCGCTCGGGTATTGTCACTC
ACCATGTGAGCGTGCACGCCTGGACGTGGCACGATGGTAGCTGCGTGACTTGGCATTGTG
TGTGTGTGCGATTGTCGTGAAGACTTGAAGACAGGAGTGGAGTGATGGGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001212A_C01 KCC001212A_c01
         (1431 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_651828.2| CG15544-PA [Drosophila melanogaster] gi|2143044...    40  0.13
ref|XP_328379.1| hypothetical protein [Neurospora crassa] gi|289...    40  0.13
ref|NP_741325.1| putative protein (62.8 kD) (4C487) [Caenorhabdi...    28  0.39
dbj|BAB84026.1| unnamed protein product [Macaca fascicularis]          37  0.67
ref|XP_168585.3| similar to mucin 11 [Homo sapiens] gi|37539171|...    37  0.67

>ref|NP_651828.2| CG15544-PA [Drosophila melanogaster] gi|21430440|gb|AAM50898.1|
            LP06141p [Drosophila melanogaster]
            gi|28381506|gb|AAF57090.4| CG15544-PA [Drosophila
            melanogaster]
          Length = 851

 Score = 39.7 bits (91), Expect = 0.13
 Identities = 40/175 (22%), Positives = 74/175 (41%), Gaps = 15/175 (8%)
 Frame = -3

Query: 1312 IPERLGARAAYVGKKELGSATPHNTLSSSLNAPQAHPYMCVCAGACANVLRIASHRALCR 1133
            +P R   R A V +   G A   +T +++  +  A       A   + V  +   R+   
Sbjct: 420  VPLRSRPRPAIVSRIAFGEAQSTSTTTAATPSSTAATSSGTAATVASRVTTVKPPRSSTS 479

Query: 1132 TAERPAPSCAPVQAYSYTS*RPSYPASRVLVNA*CRPPIL-------PVHRTIRFPASCA 974
            ++ RP        +YS+   +P++P  RVL N    P  L       P+   +   +S +
Sbjct: 480  SSIRPTTWQHHYHSYSHQP-QPAHPTRRVLFNLDKLPYDLLNAPQPHPLDPILSKHSSPS 538

Query: 973  HSAQRHT-------ILNHDIVQ-TRQPAPTYGIESSPNTPRHFHVQPDAPVIPSR 833
            H  Q+H        +  H++ Q  +QP+P +  +   ++P H H   +A  +P+R
Sbjct: 539  HYHQQHQSQQKQPHLQQHELQQHQQQPSPCWEQQRQHSSPPHQHSNQNAKGLPNR 593

>ref|XP_328379.1| hypothetical protein [Neurospora crassa] gi|28923918|gb|EAA33079.1|
           hypothetical protein [Neurospora crassa]
          Length = 853

 Score = 39.7 bits (91), Expect = 0.13
 Identities = 32/115 (27%), Positives = 45/115 (38%), Gaps = 1/115 (0%)
 Frame = -2

Query: 908 LWY*VIPQHTSSFPRPARCSCHSIAGLLPSRPVSAATVLNAYPST-RKMHGPGSMVRSPG 732
           LW  ++P H ++  RPA    H + G L     S   V   Y  T +++H P  M     
Sbjct: 290 LWENILPGHENATDRPA-FEIHRLKGRLVLEDGSEKMVQGRYLGTLQRLHIPSQM----- 343

Query: 731 ESPDRLYVRISHDHTALSASGPAAELAPEDCQRHPSRHLQKKSEGGLTKPHDAHH 567
              + L +R +H   A SA  P     P   +  P  HLQ     G    H  +H
Sbjct: 344 ---EVLVIRTTHCTCAASACRPPGVQLPLVSKARPGIHLQTSIHSGSAPRHHRYH 395

>ref|NP_741325.1| putative protein (62.8 kD) (4C487) [Caenorhabditis elegans]
           gi|22532885|gb|AAM98004.1| Hypothetical protein K08D12.6
           [Caenorhabditis elegans]
          Length = 668

 Score = 28.5 bits (62), Expect(2) = 0.39
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
 Frame = -3

Query: 595 G*QSPTTHITDKQNTHSRMARTTLATLSPSIIPQHTSSFPRPARCSCHSI-AGLLPSRPV 419
           G +S      D+Q T +  A       +P  + Q   + P PA  +   +  G     P 
Sbjct: 217 GYRSKRNSYGDEQVTPAPAAAAPAPADAP--VEQAPVAVPAPAPVAAPDVECGSAAPAPA 274

Query: 418 SAATVL--NAYPSTRKMHGPGSMVRSPGESPDRLYVRISHDHTALSASGPAAELAPEDC 248
           +AA     + Y S R  +G   +  +P  +P      +     A+ A  PAA  AP DC
Sbjct: 275 AAAPAATDSGYRSKRNSYGDEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAP-DC 332

 Score = 28.5 bits (62), Expect(2) = 0.39
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -2

Query: 854 CSCHSIAGLLPSRPVSAATVLNAYPSTRKMHGPGSMVRSPGESPDRLYVRISHDHTALSA 675
           C   + A   P+    AAT  + Y S R  +G   +  +P  +P      +     A+ A
Sbjct: 130 CGSAAPAAAAPAAAAPAATD-SGYRSKRNAYGDEQVTPAPAAAPAPADAPVEQAPVAVPA 188

Query: 674 SGPAAELAPEDC 639
             PAA  AP DC
Sbjct: 189 PAPAAAPAP-DC 199

>dbj|BAB84026.1| unnamed protein product [Macaca fascicularis]
          Length = 793

 Score = 37.4 bits (85), Expect = 0.67
 Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 1/114 (0%)
 Frame = -2

Query: 824 PSRPVSAATVLNAYPSTRKMHGPG-SMVRSPGESPDRLYVRISHDHTALSASGPAAELAP 648
           P +PV A   L    +      P  + V   G+ P  LYV +    T L    PAA L  
Sbjct: 217 PQKPVKADMALKTSVAVEVAGAPSWTKVAEEGDKPSHLYVPVDVAVT-LPRGQPAAPLTN 275

Query: 647 EDCQRHPSRHLQKKSEGGLTKPHDAHHR*TKHTLAHGTHDPCHALTKYHPPTHL 486
              QRHP    Q+     LTK     H   + T           L+K H   HL
Sbjct: 276 ASSQRHPPCLSQRPLATPLTKASSQGHLPIELTKTPSLAHLVTCLSKMHSQAHL 329

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = -3

Query: 433 PSRPVSAATVLNAYPSTRKMHGPG-SMVRSPGESPDRLYVRISHDHTALSASGPAAELAP 257
           P +PV A   L    +      P  + V   G+ P  LYV +    T L    PAA L  
Sbjct: 217 PQKPVKADMALKTSVAVEVAGAPSWTKVAEEGDKPSHLYVPVDVAVT-LPRGQPAAPLTN 275

Query: 256 EDCQRHPSRHLQKKSEGGLTKPHDAHH 176
              QRHP    Q+     LTK     H
Sbjct: 276 ASSQRHPPCLSQRPLATPLTKASSQGH 302

>ref|XP_168585.3| similar to mucin 11 [Homo sapiens] gi|37539171|ref|XP_353654.1|
            similar to mucin 11 [Homo sapiens]
          Length = 5309

 Score = 37.4 bits (85), Expect = 0.67
 Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 6/179 (3%)
 Frame = -3

Query: 586  SPTTHITDKQNTHSRMARTTLATLSPSIIPQHTSSFPRPARCSCHSIAGLLPSRPVSAAT 407
            +PTTH +    T  R   +T    SP      T++ P PAR +   +        V  +T
Sbjct: 4530 TPTTHFSASSTTLGRSEESTTVHSSPVA----TATTPSPARSTTSGL--------VEEST 4577

Query: 406  VLNAYP-STRKMHGPGSMVRSPGESPDRLYVRISHDHTALSASGPAAELAPEDCQRHPSR 230
              ++ P ST+ MH P S   S G S +      S  HT  S     + L  E    H   
Sbjct: 4578 AYHSSPGSTQTMHFPESSTAS-GRSEESRTSHSSTTHTISSPPSTTSALVEEPTSYH--- 4633

Query: 229  HLQKKSEGGLTKPH-----DAHHR*TKHTLAHGTHDPCHALTKYPIPFPLTPTRVAPTT 68
                 S G +   H         R  + T +H + D  + +T  P  F  T  R+A +T
Sbjct: 4634 ----SSPGSIATTHFPESSTTSGRSEESTASHSSPD-TNGITPLPAHF-TTSGRIAEST 4686

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 34/119 (28%), Positives = 47/119 (38%), Gaps = 1/119 (0%)
 Frame = -3

Query: 586  SPTTHITDKQNTHSRMARTTLATLSPSIIPQHTSSFPRPARCSCHSIAGLLPSRPVSAAT 407
            +PTTH +    T  R   +T    SP      T++ P PAR +   +        V  +T
Sbjct: 4337 TPTTHFSASSTTLGRSEESTTVHSSPVA----TATTPSPARSTTSGL--------VEEST 4384

Query: 406  VLNAYP-STRKMHGPGSMVRSPGESPDRLYVRISHDHTALSASGPAAELAPEDCQRHPS 233
              ++ P ST+ MH P S   S G   +      S  HT  SA    + L  E    H S
Sbjct: 4385 TYHSSPGSTQTMHFPESNTTS-GRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSS 4442

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 34/119 (28%), Positives = 47/119 (38%), Gaps = 1/119 (0%)
 Frame = -3

Query: 586  SPTTHITDKQNTHSRMARTTLATLSPSIIPQHTSSFPRPARCSCHSIAGLLPSRPVSAAT 407
            +PTTH +    T  R   +T    SP      T++ P PAR +   +        V  +T
Sbjct: 3254 TPTTHFSASSTTLGRSEESTTVHSSPVA----TATTPSPARSTTSGL--------VEEST 3301

Query: 406  VLNAYP-STRKMHGPGSMVRSPGESPDRLYVRISHDHTALSASGPAAELAPEDCQRHPS 233
              ++ P ST+ MH P S   S G   +      S  HT  SA    + L  E    H S
Sbjct: 3302 TYHSSPGSTQTMHFPESDTTS-GRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSS 3359

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 34/119 (28%), Positives = 47/119 (38%), Gaps = 1/119 (0%)
 Frame = -3

Query: 586  SPTTHITDKQNTHSRMARTTLATLSPSIIPQHTSSFPRPARCSCHSIAGLLPSRPVSAAT 407
            +PTTH +    T  R   +T    SP      T++ P PAR +   +        V  +T
Sbjct: 1697 TPTTHFSASSTTLGRSEESTTVHSSPVA----TATTPSPARSTTSGL--------VEEST 1744

Query: 406  VLNAYP-STRKMHGPGSMVRSPGESPDRLYVRISHDHTALSASGPAAELAPEDCQRHPS 233
              ++ P ST+ MH P S   S G S +      S  HT  S     + L  E    H S
Sbjct: 1745 AYHSSPGSTQTMHFPESSTAS-GRSEESRTSHSSTTHTISSPPSTTSALVEEPTSYHSS 1802



EST assemble image


clone accession position
1 CM034d11_r AV388673 1 516
2 HC081a02_r AV638033 122 589
3 HC088d10_r AV638603 244 728
4 LC029c04_r AV620960 518 1036
5 CM092g08_r AV392683 582 1028
6 HC088e11_r AV638614 678 1181
7 CM026d10_r AV387506 740 1300
8 CM045h04_r AV389716 883 1431




Chlamydomonas reinhardtii
Kazusa DNA Research Institute