KCC001161A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001161A_C01 KCC001161A_c01
ccaggcactttgctcaacctagttcgCAGCCATGCCGATTCACGGTCTCGAGTTCACTGA
TAGTCAGCTTTTCGACACCCTGAATGTGGTGCTGCCAGCATGGATTTTACTTGCACTGCT
CCCGCGTTGGAAGCATACTTATACAGTCGTCACAGCCGCGGCGCTCTACACCTCGCTCCT
GTACTCGGCATGCCTTGTCTCCATGATGATCGCGCCTTCTGAGGACGGTGCTCCGGACTT
CAGCGAGATGTTCACGCTTGAGGGCGTGTCCAAGCTGCTAGCCAAGAAGTCCGCCGCACT
GCCCTGCTGGACGCACTATGCCGCATTCGACCTGTGGGTGGGCCGCTGGATCGCCACCGA
CGCCATGGACCGGGGTTGTGCCGCAGCTGCTTGCTCATCCCCTTGCCTGTTCCTGTGCTT
GATGGTTGGCCCAATCGGCTTGGTTGCGTACTTCCTACTGGAATTGCCCTTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001161A_C01 KCC001161A_c01
         (472 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_487431.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    67  1e-10
ref|NP_926780.1| hypothetical protein glr3834 [Gloeobacter viola...    67  1e-10
ref|ZP_00071078.1| hypothetical protein [Trichodesmium erythraeu...    65  3e-10
ref|NP_441860.1| unknown protein [Synechocystis sp. PCC 6803] gi...    62  4e-09
dbj|BAB03378.1| unnamed protein product [Oryza sativa (japonica ...    42  0.004

>ref|NP_487431.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25534615|pir||AH2229
           hypothetical protein all3391 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17132486|dbj|BAB75090.1|
           ORF_ID:all3391~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 156

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
 Frame = +2

Query: 62  SQLFDTLNV-VLPAWILLALLPRWKHTYTVVTAAALYTSLLYSACLVSMMIAPSEDGAPD 238
           +QLF+  NV VLP W L+ LLP WK T  V+ +  ++  L   A L   + + + + A  
Sbjct: 4   TQLFNIANVFVLPFWALMILLPNWKVTRRVMESYLIFLPLA-GAYLYLFITSITPENAQA 62

Query: 239 FSEMFTLEGVSKLLAKKSAALPCWTHYAAFDLWVGRWIATDAMDRGCAAAACSSPCLFLC 418
            S    L  +++  A ++AA   W H+   DL+VGRWI  +    G      +   L LC
Sbjct: 63  LSNP-QLADIARFFADETAAATGWIHFLVMDLFVGRWIYWEGQKTG----IWTIHSLTLC 117

Query: 419 LMVGPIGLVAY 451
           L  GP+G++++
Sbjct: 118 LFAGPLGVLSH 128

>ref|NP_926780.1| hypothetical protein glr3834 [Gloeobacter violaceus]
           gi|35214407|dbj|BAC91775.1| glr3834 [Gloeobacter
           violaceus]
          Length = 148

 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
 Frame = +2

Query: 56  TDSQLFDTLNV-VLPAWILLALLPRWKHTYTVVTAAALYTSLLYSACLVSMMIAPSEDGA 232
           T S LFD  N+ VLP W L+ + P WK T  V+ +   + +L     LV + +       
Sbjct: 2   TVSLLFDAANLFVLPFWALMIVAPNWKVTRRVMASYLPFIAL----ALVYLYLVAGSLNT 57

Query: 233 PDFSEMFT--LEGVSKLLAKKSAALPCWTHYAAFDLWVGRWIATDAMDRGCAAAACSSPC 406
                M    L  +++    +  A   W HY  FDL+VGRWI  +    G   A  +   
Sbjct: 58  ESLQAMSNPKLADIARFFGTEQGAAAGWVHYLVFDLFVGRWIYFE----GQRTAVWTIHS 113

Query: 407 LFLCLMVGPIGLVAYFL 457
           L LCL  GP GL+++ L
Sbjct: 114 LILCLFFGPFGLLSHIL 130

>ref|ZP_00071078.1| hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 155

 Score = 65.5 bits (158), Expect = 3e-10
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
 Frame = +2

Query: 68  LFDTLNV-VLPAWILLALLPRWKHTYTVVTAAALYTSLLYSACLVSMMIAPSEDGAPDFS 244
           +F++ N  VLP W L+  LP WK T  ++ +   +  LL    L  ++ + + + A   S
Sbjct: 6   IFNSANFFVLPFWALIIFLPNWKVTRKIMESFIPFI-LLVVVYLYLLISSLTPESAAALS 64

Query: 245 EMFTLEGVSKLLAKKSAALPCWTHYAAFDLWVGRWIATDAMDRGCAAAACSSPCLFLCLM 424
              TL  ++K   ++SAA   W H+   DL+VGRWI  +    G      +   + LCL 
Sbjct: 65  NP-TLSDIAKFFGEESAAATGWVHFLVMDLFVGRWIYWEGQRTG----VWTFHSIILCLF 119

Query: 425 VGPIGLVAYFL 457
            GP GL+++ L
Sbjct: 120 AGPFGLLSHIL 130

>ref|NP_441860.1| unknown protein [Synechocystis sp. PCC 6803] gi|7469562|pir||S76409
           hypothetical protein - Synechocystis sp. (strain PCC
           6803) gi|1653626|dbj|BAA18538.1| ORF_ID:sll0354~unknown
           protein [Synechocystis sp. PCC 6803]
          Length = 154

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 43/131 (32%), Positives = 65/131 (48%), Gaps = 1/131 (0%)
 Frame = +2

Query: 68  LFDTLNV-VLPAWILLALLPRWKHTYTVVTAAALYTSLLYSACLVSMMIAPSEDGAPDFS 244
           LF+  NV VLP W L+ LLPRW+ T  V+ +  L  ++L +  L   + +   + A   +
Sbjct: 6   LFNLSNVFVLPFWGLMILLPRWQWTEKVMKSL-LPIAILAAVYLFLFIGSLGSESAAALA 64

Query: 245 EMFTLEGVSKLLAKKSAALPCWTHYAAFDLWVGRWIATDAMDRGCAAAACSSPCLFLCLM 424
               L  +++  A +      W HY   DL+VGRWI     + G      +   L LCL 
Sbjct: 65  SP-ELSVIAQAFADEKIMAVGWVHYLVMDLFVGRWIYWQGRETG----VWTVHSLILCLF 119

Query: 425 VGPIGLVAYFL 457
            GPIGL+++ L
Sbjct: 120 AGPIGLLSHLL 130

>dbj|BAB03378.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
 Frame = +2

Query: 89  VLPAWILLALLPRWKHTYTVVTAAALYTSL-LYSACLVSMMIAPSEDGAPDFSEMFT--L 259
           VLP + L+ + P    T   V ++A Y +L +  A L+ +   P    A   S+ +   L
Sbjct: 95  VLPFYTLMVVAPNADVTKRAVDSSAPYVALGILYAYLLYLSWTPDTLRAMFASKYWLPEL 154

Query: 260 EGVSKLLAKKSAALPCWTHYAAFDLWVGRWIATDAMDRGCAAAACSSPCLFLCLMVGPIG 439
            G+ ++ A +      W H  A DL+  R +  D +          S CL  C    PIG
Sbjct: 155 TGIVRMFASEMTVASAWIHLLAVDLFAARQVYHDGIKNNIETRHSVSLCLLFC----PIG 210

Query: 440 LVAYFLLEL 466
           +  + L ++
Sbjct: 211 IATHVLTKV 219



EST assemble image


clone accession position
1 HC041e02_r AV635068 1 472
2 CM022f02_r AV387862 27 490




Chlamydomonas reinhardtii
Kazusa DNA Research Institute