KCC001159A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001159A_C01 KCC001159A_c01
aGGCACAGTCTGGCCTACTACTCGAAAACTGCGTGCAATCACTGTTTGGCGACTCTAGTC
ATTGCAACCATGGCGTCCAACGATCTGCTTACGAGCGCTCAGAAGTGGCTTCGGGAGGAG
TACACAAATGAGGCGAAGTTTGGGGCCAATCTGCGCCTGCTCCGAGGCATCGCCATCTTT
GGCGGGGCCGTCTTCGTGTTCCGCAACTTCGGGGAGGCGCTGTTCGGCGCTTAAGCATGG
CTACGGTGTCCGGAGCTGGGACGTCCAGCCTCGATCATGGCGGGGCGACAGGGGGGCCCG
TGGGGCCATCCACAGCCGGAGGGAGGCGTGCAGCAGTGACACCCGAGGAGGTTGATGCCC
CAAGCAAACTGGCGGCACGGATATTGGTACGCGTCTATGGGATGGTGAGATAGGGAGTGT
CAGGAGAGGGGTTGTTGGCTGCCGAAAGGCACATCAGTCGTGCGTGTTTCTTTGTGGCGT
GGCAGCGAAGGCAGGTGCTGGATCATAGAGCAGCAATGTCAGCAGGACTTAGGATTGCAG
TTGATCAACCTGTGTCATGCACGTGTTGCATTTGGAGAGGGGACGGCTGTGCAGTACGGT
ACGCACAGGGCTATGCAGTACAGTATGCGAGAACACAGGCAGGGCAGGGCATTTGGGACC
TGGCGGTGCAGTACCTTCTGTTCCGGCAGGTTGCGTTTGTGGAGCGACGTACGCCGTGAA
GAACATGCGGAGTGTGGCAAGGGATTGTTTGGTTGTGTGATGGGTGGTGTGATGGAGTCT
TGAGCTGTATGCGGAGGCCAGCGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001159A_C01 KCC001159A_c01
         (806 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa]     45  0.001
pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospor...    45  0.001
ref|XP_218446.2| similar to hypothetical protein [Rattus norvegi...    40  0.034
gb|AAN65032.1| hypothetical protein [Oryza sativa (japonica cult...    38  0.17
ref|XP_298800.2| hypothetical protein XP_298800 [Homo sapiens]         37  0.29

>emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa]
          Length = 2592

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 47/176 (26%), Positives = 65/176 (36%), Gaps = 3/176 (1%)
 Frame = -3

Query: 705  APQTQPAGTEGTAP---PGPKCPALPVFSHTVLHSPVRTVLHSRPLSKCNTCMTQVDQLQ 535
            A + QPA +E   P   P  +    P+ +  VLH+ V+    S  +         V    
Sbjct: 1682 AEEPQPAKSEAAPPANQPFSRFQVTPIQASPVLHTLVQ---RSPTVMPAPLPPAPVAASA 1738

Query: 534  S*VLLTLLLYDPAPAFAATPQRNTHD*CAFRQPTTPLLTLPISPSHRRVPISVPPVCLGH 355
            S          P PA + T     H     RQPT   +          +P+S PP    H
Sbjct: 1739 SAAPSPQTPSRPGPAVSQTMSPVPHP---LRQPTATFVFT--EREGEPIPVSQPPAQTQH 1793

Query: 354  QPPRVSLLHASLRLWMAPRAPLSPRHDRGWTSQLRTP*PCLSAEQRLPEVAEHEDG 187
            QP R+S   A +     P A  +     GW  +   P P LS +  L EV E  +G
Sbjct: 1794 QPVRISQKTAPVPSSSMPSASEAMPRSAGWIPEANRPTPLLSQQHELREVREIREG 1849

>pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospora crassa
          Length = 2649

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 47/176 (26%), Positives = 65/176 (36%), Gaps = 3/176 (1%)
 Frame = -3

Query: 705  APQTQPAGTEGTAP---PGPKCPALPVFSHTVLHSPVRTVLHSRPLSKCNTCMTQVDQLQ 535
            A + QPA +E   P   P  +    P+ +  VLH+ V+    S  +         V    
Sbjct: 1682 AEEPQPAKSEAAPPANQPFSRFQVTPIQASPVLHTLVQ---RSPTVMPAPLPPAPVAASA 1738

Query: 534  S*VLLTLLLYDPAPAFAATPQRNTHD*CAFRQPTTPLLTLPISPSHRRVPISVPPVCLGH 355
            S          P PA + T     H     RQPT   +          +P+S PP    H
Sbjct: 1739 SAAPSPQTPSRPGPAVSQTMSPVPHP---LRQPTATFVFT--EREGEPIPVSQPPAQTQH 1793

Query: 354  QPPRVSLLHASLRLWMAPRAPLSPRHDRGWTSQLRTP*PCLSAEQRLPEVAEHEDG 187
            QP R+S   A +     P A  +     GW  +   P P LS +  L EV E  +G
Sbjct: 1794 QPVRISQKTAPVPSSSMPSASEAMPRSAGWIPEANRPTPLLSQQHELREVREIREG 1849

>ref|XP_218446.2| similar to hypothetical protein [Rattus norvegicus]
          Length = 248

 Score = 40.4 bits (93), Expect = 0.034
 Identities = 53/210 (25%), Positives = 68/210 (32%), Gaps = 31/210 (14%)
 Frame = -1

Query: 797 PPHTAQDSIT--------PPITQPNNPLPHSACSSRRTSLHKRNLPEQKVLHR--QVPNA 648
           P  T+QD  T        PP++  + P P     S       R  P  +  HR    P A
Sbjct: 15  PNPTSQDPETKEAHQFSCPPVSHQDLPRPSQPAVSGSVPSGPRRRPPPQRPHRCPDCPKA 74

Query: 647 LPCLCSRILYCIALC------VPYCTAVPSPNATRA*HRLIN--CNPKSC*HCCSMIQHL 492
                    + +A         P C    S  +  A HRL +    P SC HC     H 
Sbjct: 75  FSYPSKLATHRLAHGGTRPHPCPDCPKAFSYPSKLAAHRLTHSGARPHSCPHCPKAFGHR 134

Query: 491 PSLPRHKETRTTDVP---------FGSQQPLS*HSLSHHPIDAYQYPC----RQFAWGIN 351
             L  H  T     P         F     L+ H  +HH  DA  YPC    + F++   
Sbjct: 135 SKLAAHLWTHAPARPYPCPDCPKSFCYPSKLAAHRHTHHATDARPYPCPHCPKAFSFPSK 194

Query: 350 LLGCHCCTPPSGCGWPHGPPCRPAMIEAGR 261
           L     C         H PP  P+    GR
Sbjct: 195 LAAHRLC---------HDPPTAPSSQTTGR 215

>gb|AAN65032.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 637

 Score = 38.1 bits (87), Expect = 0.17
 Identities = 28/103 (27%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
 Frame = -2

Query: 361 GASTSSGVTAARLPPAVDGPTGPPVAPP*SRLD---------VPAPDTVAMLKRRTAPPR 209
           G + +  ++   +PP       PP  P  S +D          P P  VA  +    PP 
Sbjct: 350 GGAAADVISVVEVPPLTTVSAAPPPPPTTSEVDGEHESSIRSPPTPAVVAASRATNPPPP 409

Query: 208 SCGTRRRPRQRWRC-------LGAGADWPQTSPHLCTPPEATS 101
              T R PR  WR             D P T P +   P ATS
Sbjct: 410 RRRTSRAPRLPWRYRPVIDEHKSKSGDAPPTPPAVMVSPAATS 452

>ref|XP_298800.2| hypothetical protein XP_298800 [Homo sapiens]
          Length = 551

 Score = 37.4 bits (85), Expect = 0.29
 Identities = 62/237 (26%), Positives = 85/237 (35%), Gaps = 28/237 (11%)
 Frame = -1

Query: 785 AQDSITPPITQPNNPLPHSACSSRRTSLHKRNLPEQ-KVLHRQVPNALPCLCSRILYCIA 609
           A  S++P   +P+ PLP S  S     +    LP Q    HR + +A   +  R  + + 
Sbjct: 168 APSSVSP---RPSFPLPRSLLSVTTAIVPSATLPPQCHHGHRSLCHAPSSVSPRPSFPLP 224

Query: 608 LCVPYCTAVPSPNATRA*HRLINCNPKSC*HCCSMIQHLPS---------LPRHKETRTT 456
             +   T    P+AT          P  C H    + H PS         LPR   + TT
Sbjct: 225 RSLLSVTTAIVPSATL---------PPQCHHGHRSLCHAPSSVSPRPSFPLPRSLLSVTT 275

Query: 455 D-VPFGSQQPLS*H---SLSHHPIDAY---QYPCRQFAWGINLLGCHCCTPPSGCG-WPH 300
             VP  +  P   H   SL H P        +P  +    + +      T P  C  WP 
Sbjct: 276 AIVPSATLPPQCHHGHRSLCHAPSSVSPRPSFPLPRSLLSVTMAIVPSATLPPQCQPWPS 335

Query: 299 GPPCRPAMIEAG----------RPSSGHRSHA*APNSASPKLRNTKTAPPKMAMPRS 159
            P   P+ I               S GHRS   AP+S SP+        P   +PRS
Sbjct: 336 FPLPAPSSIVTTAIIPSASSFLNVSHGHRSLCHAPSSVSPR--------PSFPLPRS 384



EST assemble image


clone accession position
1 MX210b08_r BP089584 1 297
2 LC010a03_r AV619558 2 498
3 LC051a06_r AV622541 9 506
4 CM022e07_r AV387838 369 927




Chlamydomonas reinhardtii
Kazusa DNA Research Institute