KCC001142A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001142A_C01 KCC001142A_c01
ccgcagcgccagggaaagggccagaggcaggcgcggccttgttcccacgcgtggggtcgg
cggcgggtgggcggccgtcgACAGCGGCGTCCGTCGCGGGCAGCTCCACAACGGCGGGCG
GGGAGCTGTCCGTCAGTGATGTGCCAGTAGTGGTGGGCGGAGGCGCGGGCGGCACACGCA
CGACAGCGTCGAGCAAGCCAGGCGAGGTCATCGACACGGCCAACGGCTCGGGGTCACCAC
GCACCGTGTCCGTAGGCTCACACAGCGGGCCGCAGGTGACAGGCCAAGACTGAGCAGCAT
GTTTTGAAGGCGCGTTGATGGCCACTGGGGCCGTTTGGGTAGCAGCATAGGAAGGAGTGT
GCAGCCAGCTGGCCATGGCATTGCAAAGCCAAGTCATATCGGTGTTCTATCGCCATACTT
TGAGGTCTGAGAGCAGCTGCGAAGAACTTGAAGCGCTCATTCGACTGCTGTTGGGTGCGG
GGCCCACTGCGAATGCGTGATGTACTGGCGCACAACGATGTGGAGCCGCGTGGCCCAGCT
CATGACCTGACGTAGGACAGGTGGTGGGGCTGGAATTTGACGGGATGTGAGATGTGTGTC
ACGGAATGCGCATGAATTGCGGTGTGCATACCGTATGTGTGGCGTCCCTAAAGCTTGTCA
CATGCTGTATGGCTGCCGCTGTGTTCGTGGTCTGTAGTTTCTCACCAGGACCAGCCTGTG
TAGCTTATGGGGCCAGATGTATCGCTGTGTCTCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001142A_C01 KCC001142A_c01
         (755 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_862423.1| proline-rich extensin-like protein [Micrococcus...    51  2e-05
gb|AAG24616.1|AF298594_1 arabinogalactan protein [Nicotiana alata]     51  2e-05
ref|XP_327214.1| predicted protein [Neurospora crassa] gi|289206...    46  6e-04
ref|NP_012284.1| Required for invasion and pseudohyphae formatio...    46  7e-04
pir||A49227 sialidase - Actinomyces viscosus gi|141852|gb|AAA219...    46  7e-04

>ref|NP_862423.1| proline-rich extensin-like protein [Micrococcus sp. 28]
           gi|18025411|gb|AAK62519.1| proline-rich extensin-like
           protein [Micrococcus sp. 28]
          Length = 406

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 54/192 (28%), Positives = 75/192 (38%), Gaps = 1/192 (0%)
 Frame = -2

Query: 583 PSNSSPTTCPTSGHELGHAAPHRCAPVHHAFAVGPAPNSSRMSASSSSQLLSDLKVWR*N 404
           P+ + P   P     +G A P        A  + PAP SS   AS+ S + S        
Sbjct: 154 PAAARPAAVPARAPLIGDAPP--------AAGLTPAPESSPSLASTRSTVPSTPPAPVPA 205

Query: 403 TDMTWLCNAMASWLHTPSY-AATQTAPVAINAPSKHAAQSWPVTCGPLCEPTDTVRGDPE 227
            ++     A   W    +  A    AP A  +    AA + P++  PL EP       P 
Sbjct: 206 AEVPPA--APVPWSENSAEDAPLPAAPAAPLSALLPAAPAAPLSAPPLAEPPAAPGSLPA 263

Query: 226 PLAVSMTSPGLLDAVVRVPPAPPPTTTGTSLTDSSPPAVVELPATDAAVDGRPPAADPTR 47
           P A +++     +AV    P  PP  +  +   + PP     P   AA    PPAA P R
Sbjct: 264 PFAPAVSP----EAVAPAVPLAPPAVSAAAPPPARPPPGPAAPPPPAAALPPPPAAPPAR 319

Query: 46  GNKAAPASGPFP 11
              AAPA+ P P
Sbjct: 320 ---AAPAAAPAP 328

>gb|AAG24616.1|AF298594_1 arabinogalactan protein [Nicotiana alata]
          Length = 228

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 39/122 (31%), Positives = 51/122 (40%), Gaps = 7/122 (5%)
 Frame = -2

Query: 355 PSYAATQTAPVAINAPSKHA---AQSWPVTCGPLCEPTDTVRGDPEPLAVSMTSPGLLDA 185
           P+ A     P A++ P   A   A + PV   P+  P         P AV ++SP L   
Sbjct: 53  PATAPASAPPTAVSTPPAAAPATAPTTPVVTSPVSAPPAKTPASSPPAAVPVSSPPLAVT 112

Query: 184 VVRVPPAPPPTTTGTSLTDSSPPAVVEL--PATDAAVDGRPPAADPTRGNKAAP--ASGP 17
            V+ PPAP P    T    S+PPA V +  PA    V    P+    +G K     AS P
Sbjct: 113 PVQSPPAPAP-VAATPPAASAPPAPVPVSAPAVSETVPAPAPSKSKGKGKKKGKKHASSP 171

Query: 16  FP 11
            P
Sbjct: 172 AP 173

>ref|XP_327214.1| predicted protein [Neurospora crassa] gi|28920678|gb|EAA30039.1|
           predicted protein [Neurospora crassa]
          Length = 853

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 46/131 (35%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
 Frame = -2

Query: 364 LHTPSYAATQTAPVAINAPSKHAAQSWPVTCGPLCEPTDTVRG-----DPEPLAVSMTSP 200
           +H  S       P A +APS  AA   P T   L +P  T RG      P P   +  +P
Sbjct: 245 VHPTSQTQPTKQPSAQSAPSPAAAA--PST---LAKPAGTPRGIESLLSPSPSLAAPRAP 299

Query: 199 GLLDAVVRVPPAP---PPT---TTGTSLTDSSPPAVVELPATDAAVDGRPPAADPTRGNK 38
               A    PP P   PPT   +  T  T S P  V   PAT A      PA   T  N 
Sbjct: 300 TTAPAAGAQPPRPVPVPPTVPPSAATPATPSIPSGVPPRPATGAPAAPAAPATPRTTANG 359

Query: 37  AAPASGPFPGA 5
           AAPA  P  GA
Sbjct: 360 AAPAK-PAAGA 369

>ref|NP_012284.1| Required for invasion and pseudohyphae formation in response to
            nitrogen starvation; Muc1p [Saccharomyces cerevisiae]
            gi|728850|sp|P08640|AMYH_YEAST Glucoamylase S1/S2
            precursor (Glucan 1,4-alpha-glucosidase)
            (1,4-alpha-D-glucan glucohydrolase) gi|626156|pir||S48478
            glucan 1,4-alpha-glucosidase (EC 3.2.1.3) - yeast
            (Saccharomyces cerevisiae) gi|557822|emb|CAA86176.1| mal5
            [Saccharomyces cerevisiae] gi|1304387|gb|AAC49609.1|
            glucoamylase [Saccharomyces cerevisiae var. diastaticus]
          Length = 1367

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 7/229 (3%)
 Frame = -2

Query: 688  TNTAAAIQHVTSFRDATHTVCTPQFMRIP*HTSHIPSNSSPTTCPTSGHELGHAAPHRCA 509
            +++A      T    A  T  T +    P  +S   S+S+P   P+S      +AP   +
Sbjct: 417  SSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSS 476

Query: 508  PVHHAFAVGPAPNSSRMSASSSSQLLSDLKVWR*NTDMTWLCNAMASWLHTPSYAATQTA 329
                + A  P P+SS   +SS+    S  +             + ++ + TPS + T+++
Sbjct: 477  TTESSSAPVPTPSSSTTESSSAPVTSSTTE-------------SSSAPVPTPSSSTTESS 523

Query: 328  PVAINAPSKHAAQSWPVTCGPLCEPTDTVRGDPEPLAVSMT----SPGLLDAVVRVPPAP 161
                  PS    +S   +  P+   T      P P   S T    S  +  +      AP
Sbjct: 524  SAPAPTPSSSTTES---SSAPVTSSTTESSSAPVPTPSSSTTESSSTPVTSSTTESSSAP 580

Query: 160  PPTTTGTSLTDSSPPAVVELPATDAAVDGRPPAADP---TRGNKAAPAS 23
             PT + ++   SS P  V  P++        PA  P   T  + +AP +
Sbjct: 581  VPTPSSSTTESSSAP--VPTPSSSTTESSSAPAPTPSSSTTESSSAPVT 627

 Score = 39.7 bits (91), Expect = 0.052
 Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 6/203 (2%)
 Frame = -2

Query: 595  TSHIPSNSSPTTCPTSGHELGHAAPHRCAPVHHAFAVGPAPNSSRMSASSSSQLLSDLKV 416
            +S   S+S+P   P+S      +AP   +    + A  P P+SS   +SS+         
Sbjct: 727  SSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPV------- 779

Query: 415  WR*NTDMTWLCNAMASWLHTPSYAATQT--APVAINAPSKHAAQSWPVTCGPLCEPTDTV 242
                T  +    + ++ + TPS + T++  APV   + S +   S P +  P    T++ 
Sbjct: 780  ---PTPSSSTTESSSAPVPTPSSSTTESSVAPVPTPSSSSNITSSAP-SSTPFSSSTES- 834

Query: 241  RGDPEPLAVSMT----SPGLLDAVVRVPPAPPPTTTGTSLTDSSPPAVVELPATDAAVDG 74
               P P   S T    S  +  +      AP PT + +S   SS P+ +   +T  +   
Sbjct: 835  SSVPVPTPSSSTTESSSAPVSSSTTESSVAPVPTPSSSSNITSSAPSSIPFSSTTESF-- 892

Query: 73   RPPAADPTRGNKAAPASGPFPGA 5
                   + G    P+S  +PG+
Sbjct: 893  -------STGTTVTPSSSKYPGS 908

 Score = 39.7 bits (91), Expect = 0.052
 Identities = 46/201 (22%), Positives = 72/201 (34%), Gaps = 8/201 (3%)
 Frame = -2

Query: 595  TSHIPSNSSPTTCPTSGHELGHAAPHRCAPVHHAFAVGPAPNSSRMSASSSSQLLSDLKV 416
            +S   S+S+P   P+S      +AP   +    + A  P P+SS   +SS+         
Sbjct: 601  SSTTESSSAPAPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAP-------- 652

Query: 415  WR*NTDMTWLCNAMASWLHTPSYAATQ--TAPVAINAPSKHAAQSWPVTCGPLCEPTDTV 242
                             + TPS + T+  +APV   + S   + S PVT       + T 
Sbjct: 653  -----------------VPTPSSSTTESSSAPVPTPSSSTTESSSAPVT-------SSTT 688

Query: 241  RGDPEPLAVSMTS------PGLLDAVVRVPPAPPPTTTGTSLTDSSPPAVVELPATDAAV 80
                 P+  S T       P    +      AP PT + ++   SS P  V  P++    
Sbjct: 689  ESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP--VPTPSSSTTE 746

Query: 79   DGRPPAADPTRGNKAAPASGP 17
                P    T  + +AP   P
Sbjct: 747  SSSAPVTSSTTESSSAPVPTP 767

 Score = 39.3 bits (90), Expect = 0.068
 Identities = 53/241 (21%), Positives = 89/241 (35%), Gaps = 10/241 (4%)
 Frame = -2

Query: 709  PGEKLQTTNTAAAIQHVTSFRDATHTVCTPQFMRIP*HTSHIPSNSSPTTCPTSGHELGH 530
            P     TT +++A    ++   ++  V TP        +S   S+S+P T  T+      
Sbjct: 330  PTPSSSTTESSSAPVTSSTTESSSAPVPTPS-------SSTTESSSAPVTSSTTESS--- 379

Query: 529  AAPHRCAPVHHAFAVGPAPNSSRMSAS----------SSSQLLSDLKVWR*NTDMTWLCN 380
            +AP   +    + A  P P+SS   +S          SSS  ++       +  +T    
Sbjct: 380  SAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTT 439

Query: 379  AMASWLHTPSYAATQTAPVAINAPSKHAAQSWPVTCGPLCEPTDTVRGDPEPLAVSMTSP 200
              +S   T S   + +APV   + S   + S PVT     E +      P       +S 
Sbjct: 440  ESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVT-SSTTESSSAPVPTPSSSTTESSSA 498

Query: 199  GLLDAVVRVPPAPPPTTTGTSLTDSSPPAVVELPATDAAVDGRPPAADPTRGNKAAPASG 20
             +  +      AP PT + ++   SS PA    P++        P    T  + +AP   
Sbjct: 499  PVTSSTTESSSAPVPTPSSSTTESSSAPA--PTPSSSTTESSSAPVTSSTTESSSAPVPT 556

Query: 19   P 17
            P
Sbjct: 557  P 557

 Score = 38.9 bits (89), Expect = 0.089
 Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 13/206 (6%)
 Frame = -2

Query: 595 TSHIPSNSSPTTCPTSGHELGHAAPHRCAPVHHAFAVGPAPNSSRMSASSSSQLLSDLKV 416
           +S   S+S+P   P+S      +AP   +    + A  P P+SS  + SSS+ + S    
Sbjct: 319 SSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSS-TTESSSAPVTSSTTE 377

Query: 415 WR*NTDMTWLCNAMASWLHTPSYAATQTAPVAINAPSKHAAQSWPVTCGPLCEPTDTVRG 236
                  +    + ++ + TPS + T+++   + + S   + S PVT       + T   
Sbjct: 378 SSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTS-STTESSSAPVT-------SSTTES 429

Query: 235 DPEPLAVSMT---SPGLLDAVVRVPPAPPPTTTGTSLTDSSPP----------AVVELPA 95
              P+  S T   S  +  +      AP PT + ++   SS P          A V  P+
Sbjct: 430 SSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPS 489

Query: 94  TDAAVDGRPPAADPTRGNKAAPASGP 17
           +        P    T  + +AP   P
Sbjct: 490 SSTTESSSAPVTSSTTESSSAPVPTP 515

>pir||A49227 sialidase - Actinomyces viscosus gi|141852|gb|AAA21932.1| sialidase
          Length = 901

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 44/158 (27%), Positives = 56/158 (34%), Gaps = 20/158 (12%)
 Frame = -2

Query: 418  VWR*NTDMTWLCNAMASWLHTPSYAATQTAPVAINAPSKHAAQSWPVTCGPLCEPTDTVR 239
            +W  N  M WL          PS A + TA     APS    +    +  P  EPT    
Sbjct: 647  IWYRNFTMNWLGEQCGQKPAEPSPAPSPTA-----APSAAPTEKPAPSAAPSAEPTQAPA 701

Query: 238  GD--PEPLAVSMTSPGLLDAVVRVPPAPPPTTTGTSLTDSSP-----------PAVVELP 98
                PEP A    S           PAP PTT  ++    +P           P     P
Sbjct: 702  PSSAPEPSAAPEPSSA---------PAPEPTTAPSTEPTPAPAPSSAPEQTDGPTAAPAP 752

Query: 97   ATDAAVDGRP-------PAADPTRGNKAAPASGPFPGA 5
             T +A    P       P+ +PT+   A P+S P PGA
Sbjct: 753  ETSSAPAAEPTQAPTVAPSVEPTQAPGAQPSSAPKPGA 790

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 39/142 (27%), Positives = 47/142 (32%), Gaps = 29/142 (20%)
 Frame = -2

Query: 355  PSYAATQTAPVAINAPSKHAAQSWPVTCGPLCEPTDTVRGDPEPLAVSMTSPGLLDAVVR 176
            PS   TQ AP   +AP   AA     +  P  EPT     +P P     ++P   D    
Sbjct: 692  PSAEPTQ-APAPSSAPEPSAAPE--PSSAPAPEPTTAPSTEPTPAPAPSSAPEQTDGPTA 748

Query: 175  VP-------PAPPPTTTGTSLTDSSP--------------------PAVVELPATDAAVD 77
             P       PA  PT   T      P                    P+VV   AT AA +
Sbjct: 749  APAPETSSAPAAEPTQAPTVAPSVEPTQAPGAQPSSAPKPGATGRAPSVVNPKATGAATE 808

Query: 76   GRPP--AADPTRGNKAAPASGP 17
               P  +A P     AAP   P
Sbjct: 809  PGTPSSSASPAPSRNAAPTPKP 830



EST assemble image


clone accession position
1 CM021b03_r AV387938 1 626
2 HC011a03_r AV632658 150 756




Chlamydomonas reinhardtii
Kazusa DNA Research Institute