KCC001137A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001137A_C01 KCC001137A_c01
gcaccaggcttaccaaattTCAACCTTGCCGACTGGCGGTTTCAGTTTACATAGCTTCAC
CAGCCACCTATCGATTGCTTTCACGAGGGAGCGCTGCGCCGCGCTTGTGCTGCTATACCC
AGCTATAGATGTCGTGTAAGGGTCTGCTGGCCAAGTATGCAGAGTGCATTCGGAAGACGG
AGTGTATGGCGGTGCAAAAGCGGGATCTAAAAGACTGCATGGCAGATAAAGCGCCCGAAT
GTGAAACATATCGCTACGCCCTGTATCAGTGCCGGCGAGGCCAAGTGGACGCGAGGAGCC
GGATCCAGGGCAACAAGGGCTATTAGCGCCAGCCGGCTTCTCGTGCAGATGCCCGCCAGA
CAGCTTACCCACGCAATTGGGGCATGGCTTTGGTTTTCCTGCGGTGTGGCACAAGTACAC
TTGTCACGCAGGTGGCGTGCTGCCGAATCACATGGGCATGACCGCTACCGGATGCCGCTG
GGTGTGAAGCAGTCATACGTGCAGAAAGTGCATGGGGCTGATGCTGTTGGTAATGCGACG
TCACGGTAGGACACCCTTTGAAGGACCACTGCGGCCCAGCTGTATGAAGGGTTAATTGGC
GCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001137A_C01 KCC001137A_c01
         (603 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC43353.1| unknown protein [Arabidopsis thaliana]                 69  4e-11
ref|XP_329339.1| hypothetical protein [Neurospora crassa] gi|289...    55  1e-06
ref|NP_932123.1| RIKEN cDNA 6330578E17 [Mus musculus] gi|1280533...    49  4e-05
gb|AAH47722.1| Unknown (protein for MGC:52110) [Homo sapiens]          49  5e-05
ref|NP_652380.1| CG13018-PA [Drosophila melanogaster] gi|7303230...    46  5e-04

>dbj|BAC43353.1| unknown protein [Arabidopsis thaliana]
          Length = 71

 Score = 69.3 bits (168), Expect = 4e-11
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
 Frame = +3

Query: 132 SCKGLLAKYAECIRKTECMAVQKRDLKDCMADKAP----ECETYRYALYQCRRGQVDARS 299
           SCKGL  +  +C+ ++ C+  +KR ++DC  +K+P    EC   R   + C+RGQVD R+
Sbjct: 4   SCKGLAEELVKCLSESICVKGEKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63

Query: 300 RIQGNKGY 323
           RI+GNKGY
Sbjct: 64  RIRGNKGY 71

>ref|XP_329339.1| hypothetical protein [Neurospora crassa] gi|28926293|gb|EAA35272.1|
           hypothetical protein [Neurospora crassa]
          Length = 132

 Score = 54.7 bits (130), Expect = 1e-06
 Identities = 24/67 (35%), Positives = 40/67 (58%), Gaps = 5/67 (7%)
 Frame = +3

Query: 132 SCKGLLAKYAECIRKTECMAVQKRDLKDC----MADKAP-ECETYRYALYQCRRGQVDAR 296
           SCK + A  A+C++++EC+ V +    DC    + D  P +C+ ++ A   CRRG +D R
Sbjct: 4   SCKEIRAALAQCLQESECVMVHRNSAADCLRPPLVDTLPTQCQQFKRAFGDCRRGMIDMR 63

Query: 297 SRIQGNK 317
            R +GN+
Sbjct: 64  KRFRGNQ 70

>ref|NP_932123.1| RIKEN cDNA 6330578E17 [Mus musculus] gi|12805337|gb|AAH02137.1|
           6330578E17Rik protein [Mus musculus]
          Length = 74

 Score = 49.3 bits (116), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 36/64 (55%)
 Frame = +3

Query: 132 SCKGLLAKYAECIRKTECMAVQKRDLKDCMADKAPECETYRYALYQCRRGQVDARSRIQG 311
           +C G+      C+ ++ C+  + +  + C+  K   C   +Y+ ++C+R  +DARSR +G
Sbjct: 13  ACAGVKEDLGACLLQSACVLQEGKSPRQCL--KEGNCRALQYSFFECKRSMLDARSRFRG 70

Query: 312 NKGY 323
            KGY
Sbjct: 71  RKGY 74

>gb|AAH47722.1| Unknown (protein for MGC:52110) [Homo sapiens]
          Length = 74

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 37/64 (57%)
 Frame = +3

Query: 132 SCKGLLAKYAECIRKTECMAVQKRDLKDCMADKAPECETYRYALYQCRRGQVDARSRIQG 311
           +C GL      C+ +++C+  + +  + C+  K   C + +YA ++C+R  +D R+R +G
Sbjct: 13  ACAGLKEDLGACLLQSDCVVQEGKSPRQCL--KEGYCNSLKYAFFECKRSVLDNRARFRG 70

Query: 312 NKGY 323
            KGY
Sbjct: 71  RKGY 74

>ref|NP_652380.1| CG13018-PA [Drosophila melanogaster] gi|7303230|gb|AAF58293.1|
           CG13018-PA [Drosophila melanogaster]
          Length = 78

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
 Frame = +3

Query: 132 SCKGLLAKYAECIRKTECMAVQKRDLKDCMADK--APECETYRYALYQCRRGQVDARSRI 305
           +C G+ A    C+ +++C  + K   + C+ D     EC+  R   Y+C+R  +D R R 
Sbjct: 14  ACAGVRADLKMCLLESDCCKMGKTP-RQCLQDNNVPAECQVLRNTFYECKRSLLDNRQRF 72

Query: 306 QGNKGY 323
           +G KGY
Sbjct: 73  RGRKGY 78



EST assemble image


clone accession position
1 CM020g07_r AV397447 1 603
2 LC093d01_r AV625481 20 324




Chlamydomonas reinhardtii
Kazusa DNA Research Institute