KCC001125A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001125A_C01 KCC001125A_c01
ccgagagtatACCAGCGTTACAACTTCAGTTGCTTGTTGATATACATTAGCTGGTTTGGC
AAGCTCAAGCACCATGGCCCTGGCGACGCGCAAGGCGTTCTCTGGCAAGTCAACGATTTC
CGCTGCTCGCAGCCGGACCACCGTGACTCGTGTCTGCTGCCAGGCAAGCGGCAGCCCGCG
CCGGTCCTTCCTGCAACATACGGCTGCCTTCACCGCTGCCGCTGCCATCCTCCTCGGCTC
GCAGCCCGGTGCCATCGCCGCCAGCCTGCCCCCCCAGGACATTAAGGTCATCTGCGACGC
GGAGTGCAGCGCCAAGCTGGAGTCTGCGCCCGAGGTGTCGCTGCCCAGCGGCCTCAAGTA
CCGGGAAATCGCGGTCGGCAACGGCCCCACGCCGCCCGTGGGCTTCCAGGTGGTGGTGCA
CTATGTGGCCATGACACCTAACCTGCGCGTGTTTGACAGCAGCCTTGACAAGGGCAAGCC
CTACGACATCCGTGTGGGTGCGGGCCAGGTGATCAAGGGCCTGGATGACGGGCTGCTGCA
CATGAAGCCGGGTGCATCGGCGCTGGACTCCCCGAGAATGGCTTCCCAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001125A_C01 KCC001125A_c01
         (590 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_181884.1| immunophilin / FKBP-type peptidyl-prolyl cis-tr...   135  3e-31
pir||F84867 hypothetical protein At2g43560 [imported] - Arabidop...   131  6e-30
gb|AAL66192.1|AF386510_1 putative FKBP type peptidyl-prolyl cis-...   119  4e-26
ref|NP_681893.1| FKBP-type peptidyl-prolyl cis-trans isomerase [...    84  1e-15
ref|NP_484621.1| FKBP-type peptidyl-prolyl cis-trans isomerase [...    82  7e-15

>ref|NP_181884.1| immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase
           [Arabidopsis thaliana] gi|20138146|sp|O22870|FKB2_ARATH
           Probable FKBP-type peptidyl-prolyl cis-trans isomerase
           2, chloroplast precursor (Ppiase) (Rotamase)
           gi|15810121|gb|AAL07204.1| putative FKBP type
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana] gi|20196864|gb|AAB64339.2| FKBP-type
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana] gi|21281119|gb|AAM45036.1| putative FKBP type
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana]
          Length = 223

 Score =  135 bits (341), Expect = 3e-31
 Identities = 74/169 (43%), Positives = 104/169 (60%)
 Frame = +2

Query: 47  LAGLASSSTMALATRKAFSGKSTISAARSRTTVTRVCCQASGSPRRSFLQHTAAFTAAAA 226
           L  L S+S   L T+   S +   +   +  T  + C  ++ S RR  +      +   +
Sbjct: 9   LLPLGSASRNGLTTKNPNSSRYIAARVIASETREQSCKISNLSSRREAMLLVLGVSGGLS 68

Query: 227 ILLGSQPGAIAASLPPQDIKVICDAECSAKLESAPEVSLPSGLKYREIAVGNGPTPPVGF 406
           +   S   A AA LPP+D   +C+AEC  +LE+ P V+  SGL+Y++I VG GP+PPVGF
Sbjct: 69  M---SSLAAYAAGLPPEDKPRLCEAECEKELENVPMVTTESGLQYKDIKVGRGPSPPVGF 125

Query: 407 QVVVHYVAMTPNLRVFDSSLDKGKPYDIRVGAGQVIKGLDDGLLHMKPG 553
           QV  +YVAM P+ ++FDSSL+KG PY  RVG+GQVIKGLD+G+L MK G
Sbjct: 126 QVAANYVAMVPSGQIFDSSLEKGLPYLFRVGSGQVIKGLDEGILSMKAG 174

>pir||F84867 hypothetical protein At2g43560 [imported] - Arabidopsis thaliana
          Length = 167

 Score =  131 bits (330), Expect = 6e-30
 Identities = 62/105 (59%), Positives = 80/105 (76%)
 Frame = +2

Query: 239 SQPGAIAASLPPQDIKVICDAECSAKLESAPEVSLPSGLKYREIAVGNGPTPPVGFQVVV 418
           S   A AA LPP+D   +C+AEC  +LE+ P V+  SGL+Y++I VG GP+PPVGFQV  
Sbjct: 14  SSLAAYAAGLPPEDKPRLCEAECEKELENVPMVTTESGLQYKDIKVGRGPSPPVGFQVAA 73

Query: 419 HYVAMTPNLRVFDSSLDKGKPYDIRVGAGQVIKGLDDGLLHMKPG 553
           +YVAM P+ ++FDSSL+KG PY  RVG+GQVIKGLD+G+L MK G
Sbjct: 74  NYVAMVPSGQIFDSSLEKGLPYLFRVGSGQVIKGLDEGILSMKAG 118

>gb|AAL66192.1|AF386510_1 putative FKBP type peptidyl-prolyl cis-trans isomerase [Pyrus
           communis] gi|18252333|gb|AAL66198.1|AF386516_1 putative
           FKBP type peptidyl-prolyl cis-trans isomerase [Pyrus
           communis]
          Length = 167

 Score =  119 bits (297), Expect = 4e-26
 Identities = 56/101 (55%), Positives = 74/101 (72%)
 Frame = +2

Query: 251 AIAASLPPQDIKVICDAECSAKLESAPEVSLPSGLKYREIAVGNGPTPPVGFQVVVHYVA 430
           A  A LPP++   +CD  C  +L   P V+  SGL+Y++I VG GP+PPVGFQV  +YVA
Sbjct: 18  AEGAGLPPEEKPRLCDNSCEKELLKVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVA 77

Query: 431 MTPNLRVFDSSLDKGKPYDIRVGAGQVIKGLDDGLLHMKPG 553
           M P+ ++FDSSL+KG+ Y  RVG+GQVIKGLD+G+L MK G
Sbjct: 78  MVPSGQIFDSSLEKGQVYIFRVGSGQVIKGLDEGILSMKVG 118

>ref|NP_681893.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Thermosynechococcus
           elongatus BP-1] gi|22294826|dbj|BAC08655.1| FKBP-type
           peptidyl-prolyl cis-trans isomerase [Thermosynechococcus
           elongatus BP-1]
          Length = 162

 Score = 84.0 bits (206), Expect = 1e-15
 Identities = 40/100 (40%), Positives = 61/100 (61%)
 Frame = +2

Query: 254 IAASLPPQDIKVICDAECSAKLESAPEVSLPSGLKYREIAVGNGPTPPVGFQVVVHYVAM 433
           +AA +    + +    E +  + +   V+ PSGL+Y +I VG+G  P VG +V VHY  M
Sbjct: 25  VAAPMAIASVPLEASTEAAGLMGNPKVVTTPSGLQYEDIVVGSGAQPQVGDRVTVHYTGM 84

Query: 434 TPNLRVFDSSLDKGKPYDIRVGAGQVIKGLDDGLLHMKPG 553
             + R+FDSS D+G+P+  ++G GQVIKG D+G+  M  G
Sbjct: 85  LTDGRIFDSSRDRGQPFQFQIGVGQVIKGWDEGVGSMHVG 124

>ref|NP_484621.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Nostoc sp. PCC 7120]
           gi|25292526|pir||AH1878 FKBP-type peptidyl-prolyl
           cis-trans isomerase [imported] - Nostoc sp. (strain PCC
           7120) gi|17129922|dbj|BAB72535.1| FKBP-type
           peptidyl-prolyl cis-trans isomerase [Nostoc sp. PCC
           7120]
          Length = 165

 Score = 81.6 bits (200), Expect = 7e-15
 Identities = 48/111 (43%), Positives = 60/111 (53%), Gaps = 7/111 (6%)
 Frame = +2

Query: 242 QPGAIAASLPPQDIKVICDAECSAKLE-------SAPEVSLPSGLKYREIAVGNGPTPPV 400
           Q  AIAA+LP   +  I   E +  ++       S P V+  SGLKY EI  G G TP  
Sbjct: 17  QDSAIAANLPQTPLATISVTENNTPIKKNIMSEASKPPVTTDSGLKYVEIEEGTGATPKS 76

Query: 401 GFQVVVHYVAMTPNLRVFDSSLDKGKPYDIRVGAGQVIKGLDDGLLHMKPG 553
           G  VVVHY     +   FDSS D+ +P+   +G GQVIKG D+GL  MK G
Sbjct: 77  GQTVVVHYTGTLEDGTKFDSSRDRNRPFSFTIGVGQVIKGWDEGLSTMKVG 127



EST assemble image


clone accession position
1 LC078b04_r AV624465 1 440
2 HC088f08_r AV638623 11 448
3 CM020a11_r AV397493 15 590
4 LC031b05_r AV621094 18 579
5 LC002f01_r AV619012 23 514




Chlamydomonas reinhardtii
Kazusa DNA Research Institute