KCC001102A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001102A_C01 KCC001102A_c01
ttcagctcggcgtgtcGAAAGTATACCAGTACTTGCGACCCGGCTCTCCCCAACTGCTCG
ACGGGGCCCACGCCGCGTCTGCGACACGCAGCCTTCATTAGCTCGATAGTAATCTTCGTA
ATAGCGCTCCGCTACAAACGGGCTCTGGACTGGCGAGGCCGCCCGCGACGAGCTCCGCGC
CTTCCCAGCTACCCGCCTGGGCCCCACCACTTCCGCCACCGACCGCCGGCAAGCCCGAGG
GCCATTAGCACTGCACCCGCAGTCAGTGTGGCATGTGTGTGGCTAAGGTTGGCTAGCAGG
TTACATAAGGCATAGGGAAGCGCTAGGGGGCGGCCGGGAGCTGCAGCCTACCCTCAGCAG
CACGCCCCGGCACACAGCCCTGCGTTGCCTTGCAACCAACTAGCCAGCCCAACCCTCCTC
GTGCCCAACTGTCCACCCCACCTCAATAGCCCAGCTTCTAAATAGAGTTCATATACCGAT
ACACCTAAAGGCCTTTAAGCAGCGCCGGCGTTCTGATCACCGGACCGGCGCGGGCGGCGA
CGGCAGGCTACGTCAGGGCGCTAAAGACGCCACCGGCGGCTCCTCGGCGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001102A_C01 KCC001102A_c01
         (591 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC52865.1| neural variant mena++ protein [Mus musculus]            39  0.041
ref|NP_034265.1| enabled homolog; NPC derived proline rich prote...    39  0.041
gb|AAC52864.1| neural variant mena+ protein [Mus musculus]             39  0.041
ref|XP_341166.1| similar to mena protein [Rattus norvegicus]           39  0.070
ref|XP_301454.1| similar to gene_id:K19E20.3~unknown protein [Ho...    38  0.092

>gb|AAC52865.1| neural variant mena++ protein [Mus musculus]
          Length = 787

 Score = 39.3 bits (90), Expect = 0.041
 Identities = 45/154 (29%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
 Frame = +1

Query: 43  ALPNCSTGPTPRLRHAAFISSIVIFVIALRYKRALDWRGRPRRAPRLPSYP--PGPHHFR 216
           ALP  ST PTP LRHA           A R+  +L         P LP Y   P P +  
Sbjct: 291 ALPPTSTPPTPPLRHA-----------ATRFATSLG----SAFHPVLPHYATVPRPLNKN 335

Query: 217 HRPPASPRAISTAPAVSVACVW-------------LRLASRLHKA*GSARGRPGAAAYPQ 357
            RP +     S+ P  + +C W             + ++S   KA G     P   + P 
Sbjct: 336 SRPSSPVNTPSSQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPVCVSSPV 395

Query: 358 QHAPAHSPALPCNQLASPTLLVPNCPPHLNSPAS 459
              P  SP  P   L S T   P  PP  + PA+
Sbjct: 396 PQMPP-SPTAPNGSLDSVT--YPVSPPPTSGPAA 426

 Score = 38.9 bits (89), Expect = 0.054
 Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 2/119 (1%)
 Frame = +3

Query: 102 LDSNLRNSAPLQTGSGLARPPATSSA--PSQLPAWAPPLPPPTAGKPEGH*HCTRSQCGM 275
           L+ N R S+P+ T S  ++PPA  S   P+   +  PP PP     P G     R    +
Sbjct: 332 LNKNSRPSSPVNTPS--SQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPV 389

Query: 276 CVAKVG*QVT*GIGKR*GAAGSCSLPSAARPGTQPCVALQPTSQPNPPRAQLSTPPQ*P 452
           CV+    Q+        G+  S + P +  P + P     P   P PP      PP  P
Sbjct: 390 CVSSPVPQMPPSPTAPNGSLDSVTYPVSPPPTSGPAAPPPPPPPPPPPPPPPLPPPPLP 448

>ref|NP_034265.1| enabled homolog; NPC derived proline rich protein 1 [Mus musculus]
           gi|30179826|sp|Q03173|ENAH_MOUSE Enabled protein homolog
           (NPC derived proline-rich protein 1) (NDPP-1)
           gi|1644461|gb|AAC52866.1| neural variant mena+++ protein
           [Mus musculus]
          Length = 802

 Score = 39.3 bits (90), Expect = 0.041
 Identities = 45/154 (29%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
 Frame = +1

Query: 43  ALPNCSTGPTPRLRHAAFISSIVIFVIALRYKRALDWRGRPRRAPRLPSYP--PGPHHFR 216
           ALP  ST PTP LRHA           A R+  +L         P LP Y   P P +  
Sbjct: 306 ALPPTSTPPTPPLRHA-----------ATRFATSLG----SAFHPVLPHYATVPRPLNKN 350

Query: 217 HRPPASPRAISTAPAVSVACVW-------------LRLASRLHKA*GSARGRPGAAAYPQ 357
            RP +     S+ P  + +C W             + ++S   KA G     P   + P 
Sbjct: 351 SRPSSPVNTPSSQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPVCVSSPV 410

Query: 358 QHAPAHSPALPCNQLASPTLLVPNCPPHLNSPAS 459
              P  SP  P   L S T   P  PP  + PA+
Sbjct: 411 PQMPP-SPTAPNGSLDSVT--YPVSPPPTSGPAA 441

 Score = 38.9 bits (89), Expect = 0.054
 Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 2/119 (1%)
 Frame = +3

Query: 102 LDSNLRNSAPLQTGSGLARPPATSSA--PSQLPAWAPPLPPPTAGKPEGH*HCTRSQCGM 275
           L+ N R S+P+ T S  ++PPA  S   P+   +  PP PP     P G     R    +
Sbjct: 347 LNKNSRPSSPVNTPS--SQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPV 404

Query: 276 CVAKVG*QVT*GIGKR*GAAGSCSLPSAARPGTQPCVALQPTSQPNPPRAQLSTPPQ*P 452
           CV+    Q+        G+  S + P +  P + P     P   P PP      PP  P
Sbjct: 405 CVSSPVPQMPPSPTAPNGSLDSVTYPVSPPPTSGPAAPPPPPPPPPPPPPPPLPPPPLP 463

>gb|AAC52864.1| neural variant mena+ protein [Mus musculus]
          Length = 783

 Score = 39.3 bits (90), Expect = 0.041
 Identities = 45/154 (29%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
 Frame = +1

Query: 43  ALPNCSTGPTPRLRHAAFISSIVIFVIALRYKRALDWRGRPRRAPRLPSYP--PGPHHFR 216
           ALP  ST PTP LRHA           A R+  +L         P LP Y   P P +  
Sbjct: 287 ALPPTSTPPTPPLRHA-----------ATRFATSLG----SAFHPVLPHYATVPRPLNKN 331

Query: 217 HRPPASPRAISTAPAVSVACVW-------------LRLASRLHKA*GSARGRPGAAAYPQ 357
            RP +     S+ P  + +C W             + ++S   KA G     P   + P 
Sbjct: 332 SRPSSPVNTPSSQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPVCVSSPV 391

Query: 358 QHAPAHSPALPCNQLASPTLLVPNCPPHLNSPAS 459
              P  SP  P   L S T   P  PP  + PA+
Sbjct: 392 PQMPP-SPTAPNGSLDSVT--YPVSPPPTSGPAA 422

 Score = 38.9 bits (89), Expect = 0.054
 Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 2/119 (1%)
 Frame = +3

Query: 102 LDSNLRNSAPLQTGSGLARPPATSSA--PSQLPAWAPPLPPPTAGKPEGH*HCTRSQCGM 275
           L+ N R S+P+ T S  ++PPA  S   P+   +  PP PP     P G     R    +
Sbjct: 328 LNKNSRPSSPVNTPS--SQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPV 385

Query: 276 CVAKVG*QVT*GIGKR*GAAGSCSLPSAARPGTQPCVALQPTSQPNPPRAQLSTPPQ*P 452
           CV+    Q+        G+  S + P +  P + P     P   P PP      PP  P
Sbjct: 386 CVSSPVPQMPPSPTAPNGSLDSVTYPVSPPPTSGPAAPPPPPPPPPPPPPPPLPPPPLP 444

>ref|XP_341166.1| similar to mena protein [Rattus norvegicus]
          Length = 820

 Score = 38.5 bits (88), Expect = 0.070
 Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 2/119 (1%)
 Frame = +3

Query: 102 LDSNLRNSAPLQTGSGLARPPATSSA--PSQLPAWAPPLPPPTAGKPEGH*HCTRSQCGM 275
           L+ N R S+P+ T S  ++PPA  S   P+   +  PP PP     P G     R    +
Sbjct: 334 LNRNSRPSSPVNTPS--SQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPV 391

Query: 276 CVAKVG*QVT*GIGKR*GAAGSCSLPSAARPGTQPCVALQPTSQPNPPRAQLSTPPQ*P 452
           CV+    Q+        G+  S + P +  P + P     P   P PP      PP  P
Sbjct: 392 CVSSPVPQMPPSPTAPNGSLDSVTYPVSPPPTSGPAAPPPPPPPPPPPPPPPPPPPLPP 450

 Score = 38.1 bits (87), Expect = 0.092
 Identities = 44/154 (28%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
 Frame = +1

Query: 43  ALPNCSTGPTPRLRHAAFISSIVIFVIALRYKRALDWRGRPRRAPRLPSYP--PGPHHFR 216
           ALP  ST PTP LRH+           A R+  +L         P LP Y   P P +  
Sbjct: 293 ALPPTSTPPTPPLRHS-----------ATRFATSLG----SAFHPVLPHYATVPRPLNRN 337

Query: 217 HRPPASPRAISTAPAVSVACVW-------------LRLASRLHKA*GSARGRPGAAAYPQ 357
            RP +     S+ P  + +C W             + ++S   KA G     P   + P 
Sbjct: 338 SRPSSPVNTPSSQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPVCVSSPV 397

Query: 358 QHAPAHSPALPCNQLASPTLLVPNCPPHLNSPAS 459
              P  SP  P   L S T   P  PP  + PA+
Sbjct: 398 PQMPP-SPTAPNGSLDSVT--YPVSPPPTSGPAA 428

>ref|XP_301454.1| similar to gene_id:K19E20.3~unknown protein [Homo sapiens]
          Length = 431

 Score = 38.1 bits (87), Expect = 0.092
 Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +1

Query: 160 RPRRAPRLPSYPPGPHHFRHRPPASPRAISTAPAVSVACVWLRLASRLHKA*GSARGRPG 339
           RP   P  P  PP P H  H P  +P A +++P         R     H +  S RG   
Sbjct: 206 RPHILPTFPQGPPTPPHPPHLPTGAPNAPTSSPPSH------RGPQHPHISPPSHRGPQH 259

Query: 340 AAAYPQQH-APAHSPALPCNQLASPTLLVPNCPPHLNSPA 456
               P  H  P H   LP      P   +P  PPHL++ A
Sbjct: 260 PHISPPSHRGPQHPHILPTFLQGPP---IPLHPPHLSTGA 296

 Score = 32.7 bits (73), Expect = 3.9
 Identities = 29/101 (28%), Positives = 38/101 (36%)
 Frame = +1

Query: 160 RPRRAPRLPSYPPGPHHFRHRPPASPRAISTAPAVSVACVWLRLASRLHKA*GSARGRPG 339
           RP   P  P +PP P H  H    +P   + +P          ++   H+    +   P 
Sbjct: 325 RPHILPTFPQWPPTPLHPPHLSTGAPSTPTPSPPSHRGPQHPHISPPFHRGSQHSHTLP- 383

Query: 340 AAAYPQQHAPAHSPALPCNQLASPTLLVPNCPPHLNSPASK 462
              +PQ   P   P LP      PT   P  PPH N P SK
Sbjct: 384 --TFPQ--GPPTPPHLPTFPQWPPT---PPHPPHRN-PCSK 416



EST assemble image


clone accession position
1 CM017h10_r AV388209 1 597
2 HCL029g08_r AV641208 17 325




Chlamydomonas reinhardtii
Kazusa DNA Research Institute