KCC001066A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001066A_C01 KCC001066A_c01
cacgcgaatgagcgttacagctctaatgtccgccttccgcagcacagcgccgacaggaac
gcctcactccggctggcttgGACCTGCCTGCTGTATGTGCAATCGGTCAGCTTTACCACA
ACCTAACATCCACCCCGCGGTTTAGGCCGGACAATACTCCGCCACACGCGTAAAGGGCAC
CTATGCACACGGTACACAACTCACGTACCTGCCTCCTTCGAAATCATCCACGCTGCAACC
TCACCTACCCGTTCACATACGGTACGACGCCCACACACGCAATCACACTCTCGCAGGGAA
ATAAGCCGGTTGTCCATTAAGACAGCACTACAAAAGAATACATGTTTGCTGCTTGCAAAT
CCCCCAAGACCATGCACGCAGGCGCTCCGCGACCATGGCCGGGCTAACCTCTGTCAGCCG
CCGCCACAGCGGCTGCTGACGAGACCAGCCACGGCTACAACCACTCAAGCCACACTTnca
tgccctcaacac


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001066A_C01 KCC001066A_c01
         (492 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA24242.1| P12 [Leucania separata nuclear polyhedrosis virus]     35  0.38
ref|XP_325290.1| hypothetical protein ( related to a-agglutinin ...    33  1.5
gb|AAF64523.1| cervical mucin MUC5B [Homo sapiens]                     33  1.5
emb|CAB91473.2| related to a-agglutinin core protein AGA1 [Neuro...    33  1.5
gi|33694679 TPA: IVa2 [Murine adenovirus 1]                            33  1.9

>dbj|BAA24242.1| P12 [Leucania separata nuclear polyhedrosis virus]
          Length = 102

 Score = 35.4 bits (80), Expect = 0.38
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 127 HPPRGLGRTILRHTRKGHLCTRYTTHVPASFEIIHAATSPT 249
           HP R L   + RHT   H  TR   H+P ++++I AA + T
Sbjct: 35  HPERELKYKVFRHTTTEHSITRTLLHMPTTYDMICAAVTRT 75

>ref|XP_325290.1| hypothetical protein ( related to a-agglutinin core protein AGA1
           [imported] - Neurospora crassa ) gi|11359608|pir||T49672
           related to a-agglutinin core protein AGA1 [imported] -
           Neurospora crassa gi|28924930|gb|EAA34022.1|
           hypothetical protein ( related to a-agglutinin core
           protein AGA1 [imported] - Neurospora crassa )
          Length = 590

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = +1

Query: 232 AATSPTRSHTVRRPHTQSHSRREISRLSIKTALQKNTCLLLANPPRPCTQALRDHGRANL 411
           A+T PT SH+    H+ SHS      LS   +  K+    L + PR      R HG A+ 
Sbjct: 187 ASTHPTSSHSTTHSHSHSHSHSHSHSLSHSRSYWKD----LVHDPR------RAHGGAS- 235

Query: 412 CQPPPQ 429
             PPPQ
Sbjct: 236 --PPPQ 239

>gb|AAF64523.1| cervical mucin MUC5B [Homo sapiens]
          Length = 716

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 35/126 (27%), Positives = 53/126 (41%), Gaps = 1/126 (0%)
 Frame = +1

Query: 100 QSVSFTTT*HPPRGLGRTILRHTRKGHLCTRYTTHVPASFEIIHAATSPTRSHTVRRPHT 279
           +S + + T  P   LG T       G L  + TT V A+   IH +++P  +HT     T
Sbjct: 408 KSTATSVTPIPSSTLGTT-------GTLPEQTTTPV-ATMSTIHPSSTPETTHTSTVLTT 459

Query: 280 QSHSRREISRLSIKTALQKNTCLLLANPPRPCTQALRDHGRANLCQPPPQRLLTR-PATA 456
           ++ + R  S  S  ++    TC+L        T A           P    +LT    TA
Sbjct: 460 EATTTRATSSTSTPSSTPGTTCILTELTTAATTTAATGPTAMPSSTPGTTWILTELTTTA 519

Query: 457 TTTQAT 474
           TTT++T
Sbjct: 520 TTTEST 525

>emb|CAB91473.2| related to a-agglutinin core protein AGA1 [Neurospora crassa]
          Length = 550

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = +1

Query: 232 AATSPTRSHTVRRPHTQSHSRREISRLSIKTALQKNTCLLLANPPRPCTQALRDHGRANL 411
           A+T PT SH+    H+ SHS      LS   +  K+    L + PR      R HG A+ 
Sbjct: 154 ASTHPTSSHSTTHSHSHSHSHSHSHSLSHSRSYWKD----LVHDPR------RAHGGAS- 202

Query: 412 CQPPPQ 429
             PPPQ
Sbjct: 203 --PPPQ 206

>gi|33694679 TPA: IVa2 [Murine adenovirus 1]
          Length = 440

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 21/58 (36%), Positives = 32/58 (54%)
 Frame = +2

Query: 113 LPQPNIHPAV*AGQYSATRVKGTYAHGTQLTYLPPSKSSTLQPHLPVHIRYDAHTRNH 286
           +PQ ++ P      ++A  V+G Y  G Q T +P  KS TL+P L + + YD  T +H
Sbjct: 189 VPQIDMIPPQEMSAWNAQLVEGNYTCGPQQTIVP--KSGTLKPRL-ITLTYDDLTADH 243



EST assemble image


clone accession position
1 CM013h03_r AV387063 1 492
2 CM093h12_r AV392994 87 457




Chlamydomonas reinhardtii
Kazusa DNA Research Institute