KCC001047A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001047A_C01 KCC001047A_c01
TGACCGCGAAGATCTAGGGATTCACTAAGAACCGTAACAATGCAGATGATGCAGCGCAAC
GTTGTGGGCCAGCGCCCCGTCGCTGGCTCCCGCCGCTCGCTGGTGGTTGCCAACGTTGCG
GAGGTGACCCGCCCCGCGGTCAGCACCAACGGCAAGCACCGGACTGGTGTGCCGGAGGGA
ACTCCCATCGTCACCCCTCAGGACCTGCCCTCGCGCCCTCGCCGCAACCGCCGCAGCGAG
AGCTTCCGTGCTTCCGTTCGTGAGGTGAACGTGTCGCCCGCCAACTTCATCCTGCCGATC
TTCATCCACGAGGAGAGCAACCAGAACGTGCCCATCGCCTCCATGCCTGGCATCAACCGC
CTGGCGTATGGCAAGAACGTGATTGACTACGTTGCTGAGGCTCGCTCTTACGGTGTCAAC
CAGGTCGTGGTTTTCCCCAAGACGCCCGACCACCTGAAGACGCAAACCGCGGAGGAGGCG
TTCAACAAGAACGGCCTCAGCCAGCGCACGATCCGCCTGCTGAAGGACTCTTTCCCTGAC
CTGGAGGTGTACACGGACGTGGCTCTGGACCCCTACAACTCGGACGGCCACGACGGTATC
GTGTCGGACGCCGGTGTGATCCTGAACGACGAGACCATCGAGTACCTGTGCCGCCAGGCC
GTGAGCCAGGCCGAGGCCGGTGCCGACGTGGTGTCGCCCTCTGACATGATGGACGGCCGC
GTGGGCGCCATCCGCCGCGCCCTGGACCGCGAGGGCTTCACCAACGTGTCCATCATGTCC
TACACCGCCAAGTACGCCTCCGCCTACTACGGCCCCTTCCGTGACGCCCTGGCGTCCGCG
CCCAAGCCCGGACAGGCGCACCGCCGCATCCCCCCCAACAAGAAGACCTACCAGATGGAC
CCCGCCAACTACCGCGAGGCCATCCGCGAGGCCAAGGCCGACGAGGCCGAGGGCGCTGAC
ATCATGATGGTCAAGCCCGGCATGCCGTACCTGGACGTGGTACGCCTGCTGCGTGAGACC
AGCCCGCTGCCCGTGGCCGTGTACCACGTGTCGGGCGAGTACGCCATGCTCAAAGCGGCG
GCGGAGCGCGGCTGGCTGAACGAGAAGGATGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001047A_C01 KCC001047A_c01
         (1112 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q42682|HEM2_CHLRE Delta-aminolevulinic acid dehydratase, chlo...   708  0.0
prf||2114378A aminolevulinate dehydratase                             401  e-110
gb|AAK15323.1|AF332195_1 aminolevulinate dehydratase [Raphanus s...   401  e-110
ref|NP_177132.1| porphobilinogen synthase (delta-aminolevulinic ...   400  e-110
sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chlo...   400  e-110

>sp|Q42682|HEM2_CHLRE Delta-aminolevulinic acid dehydratase, chloroplast precursor
            (Porphobilinogen synthase) (ALADH) gi|1076214|pir||S53487
            porphobilinogen synthase (EC 4.2.1.24) precursor -
            Chlamydomonas reinhardtii gi|642579|gb|AAA79515.1|
            delta-aminolevulinic acid dehydratase precursor
          Length = 390

 Score =  708 bits (1827), Expect = 0.0
 Identities = 356/357 (99%), Positives = 356/357 (99%)
 Frame = +1

Query: 40   MQMMQRNVVGQRPVAGSRRSLVVANVAEVTRPAVSTNGKHRTGVPEGTPIVTPQDLPSRP 219
            MQMMQRNVVGQRPVAGSRRSLVVANVAEVTRPAVSTNGKHRTGVPEGTPIVTPQDLPSRP
Sbjct: 1    MQMMQRNVVGQRPVAGSRRSLVVANVAEVTRPAVSTNGKHRTGVPEGTPIVTPQDLPSRP 60

Query: 220  RRNRRSESFRASVREVNVSPANFILPIFIHEESNQNVPIASMPGINRLAYGKNVIDYVAE 399
            RRNRRSESFRASVREVNVSPANFILPIFIHEESNQNVPIASMPGINRLAYGKNVIDYVAE
Sbjct: 61   RRNRRSESFRASVREVNVSPANFILPIFIHEESNQNVPIASMPGINRLAYGKNVIDYVAE 120

Query: 400  ARSYGVNQVVVFPKTPDHLKTQTAEEAFNKNGLSQRTIRLLKDSFPDLEVYTDVALDPYN 579
             RSYGVNQVVVFPKTPDHLKTQTAEEAFNKNGLSQRTIRLLKDSFPDLEVYTDVALDPYN
Sbjct: 121  PRSYGVNQVVVFPKTPDHLKTQTAEEAFNKNGLSQRTIRLLKDSFPDLEVYTDVALDPYN 180

Query: 580  SDGHDGIVSDAGVILNDETIEYLCRQAVSQAEAGADVVSPSDMMDGRVGAIRRALDREGF 759
            SDGHDGIVSDAGVILNDETIEYLCRQAVSQAEAGADVVSPSDMMDGRVGAIRRALDREGF
Sbjct: 181  SDGHDGIVSDAGVILNDETIEYLCRQAVSQAEAGADVVSPSDMMDGRVGAIRRALDREGF 240

Query: 760  TNVSIMSYTAKYASAYYGPFRDALASAPKPGQAHRRIPPNKKTYQMDPANYREAIREAKA 939
            TNVSIMSYTAKYASAYYGPFRDALASAPKPGQAHRRIPPNKKTYQMDPANYREAIREAKA
Sbjct: 241  TNVSIMSYTAKYASAYYGPFRDALASAPKPGQAHRRIPPNKKTYQMDPANYREAIREAKA 300

Query: 940  DEAEGADIMMVKPGMPYLDVVRLLRETSPLPVAVYHVSGEYAMLKAAAERGWLNEKD 1110
            DEAEGADIMMVKPGMPYLDVVRLLRETSPLPVAVYHVSGEYAMLKAAAERGWLNEKD
Sbjct: 301  DEAEGADIMMVKPGMPYLDVVRLLRETSPLPVAVYHVSGEYAMLKAAAERGWLNEKD 357

>prf||2114378A aminolevulinate dehydratase
          Length = 430

 Score =  401 bits (1031), Expect = e-110
 Identities = 196/316 (62%), Positives = 248/316 (78%)
 Frame = +1

Query: 160  RTGVPEGTPIVTPQDLPSRPRRNRRSESFRASVREVNVSPANFILPIFIHEESNQNVPIA 339
            +   P+GTPIV+   +  RPRRNRRS + RA+ +E N+SPAN + P+FIHE   ++ PI 
Sbjct: 89   KPAAPDGTPIVSSLPINRRPRRNRRSSAARAAFQETNISPANLVYPLFIHE-GEEDTPIG 147

Query: 340  SMPGINRLAYGKNVIDYVAEARSYGVNQVVVFPKTPDHLKTQTAEEAFNKNGLSQRTIRL 519
            +MPG  RL +   +++ VA+AR  GVN +V+FPK PD LKT T +EA+N NGL  RTIRL
Sbjct: 148  AMPGCYRLGWRHGLVEEVAKARDVGVNSIVLFPKVPDALKTSTGDEAYNDNGLVPRTIRL 207

Query: 520  LKDSFPDLEVYTDVALDPYNSDGHDGIVSDAGVILNDETIEYLCRQAVSQAEAGADVVSP 699
            LKD +PDL +YTDVALDPY+SDGHDGIV + GVI+NDET+  LC+QAV+QA AGADVVSP
Sbjct: 208  LKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSP 267

Query: 700  SDMMDGRVGAIRRALDREGFTNVSIMSYTAKYASAYYGPFRDALASAPKPGQAHRRIPPN 879
            SDMMDGRVGAIR ALD EGF +VSIMSYTAKYAS++YGPFR+AL S P+ G        +
Sbjct: 268  SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG--------D 319

Query: 880  KKTYQMDPANYREAIREAKADEAEGADIMMVKPGMPYLDVVRLLRETSPLPVAVYHVSGE 1059
            KKTYQM+PANYREA+ E +ADE+EGADI++VKPG+PYLD++RLLR+ SPLP+A Y VSGE
Sbjct: 320  KKTYQMNPANYREALVEMQADESEGADILLVKPGLPYLDIIRLLRDKSPLPIAAYQVSGE 379

Query: 1060 YAMLKAAAERGWLNEK 1107
            Y+M+KA      ++E+
Sbjct: 380  YSMIKAGGVLKMIDEE 395

>gb|AAK15323.1|AF332195_1 aminolevulinate dehydratase [Raphanus sativus]
          Length = 426

 Score =  401 bits (1030), Expect = e-110
 Identities = 196/316 (62%), Positives = 247/316 (78%)
 Frame = +1

Query: 160  RTGVPEGTPIVTPQDLPSRPRRNRRSESFRASVREVNVSPANFILPIFIHEESNQNVPIA 339
            +   P GTP++ P +L  RPRRNR S + RA+ +E ++SPANF+ P+FIHE   ++ PI 
Sbjct: 85   KPAAPAGTPVIQPLNLNRRPRRNRASPTVRAAFQETDISPANFVYPLFIHE-GEEDTPIG 143

Query: 340  SMPGINRLAYGKNVIDYVAEARSYGVNQVVVFPKTPDHLKTQTAEEAFNKNGLSQRTIRL 519
            +MPG  RL +   ++  VA+AR+ GVN +V+FPK P+ LK  T +EA+N NGL  RTIRL
Sbjct: 144  AMPGCYRLGWRHGLLQEVAKARAVGVNSIVLFPKVPEALKNPTGDEAYNDNGLVPRTIRL 203

Query: 520  LKDSFPDLEVYTDVALDPYNSDGHDGIVSDAGVILNDETIEYLCRQAVSQAEAGADVVSP 699
            LKD +PDL +YTDVALDPY+SDGHDGIV + GVI+NDET+  LC+QAVSQA AGADVVSP
Sbjct: 204  LKDKYPDLIIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 263

Query: 700  SDMMDGRVGAIRRALDREGFTNVSIMSYTAKYASAYYGPFRDALASAPKPGQAHRRIPPN 879
            SDMMDGRVGAIR ALD EGF NVSIMSYTAKYAS++YGPFR+AL S P+ G        +
Sbjct: 264  SDMMDGRVGAIRAALDAEGFQNVSIMSYTAKYASSFYGPFREALDSNPRFG--------D 315

Query: 880  KKTYQMDPANYREAIREAKADEAEGADIMMVKPGMPYLDVVRLLRETSPLPVAVYHVSGE 1059
            KKTYQM+PANYREA+ EA+ DEAEGADI++VKPG+PYLD++RLLR+ SPLP+A Y VSGE
Sbjct: 316  KKTYQMNPANYREALIEAREDEAEGADILLVKPGLPYLDIIRLLRDKSPLPIAAYQVSGE 375

Query: 1060 YAMLKAAAERGWLNEK 1107
            Y+M+KA      ++E+
Sbjct: 376  YSMIKAGGVLKMIDEE 391

>ref|NP_177132.1| porphobilinogen synthase (delta-aminolevulinic acid dehydratase),
            putative [Arabidopsis thaliana]
            gi|12229846|sp|Q9SFH9|HEM2_ARATH Delta-aminolevulinic
            acid dehydratase, chloroplast precursor (Porphobilinogen
            synthase) (ALADH) gi|25291926|pir||D96719 hypothetical
            protein T6C23.6 [imported] - Arabidopsis thaliana
            gi|11935205|gb|AAG42018.1|AF327428_1 putative
            aminolevulinate dehydratase [Arabidopsis thaliana]
            gi|12325198|gb|AAG52549.1|AC013289_16 putative
            aminolevulinate dehydratase; 38705-36189 [Arabidopsis
            thaliana] gi|13605645|gb|AAK32816.1|AF361803_1
            At1g69740/T6C23_6 [Arabidopsis thaliana]
            gi|16323332|gb|AAL15379.1| At1g69740/T6C23_6 [Arabidopsis
            thaliana] gi|19698815|gb|AAL91143.1| putative
            aminolevulinate dehydratase [Arabidopsis thaliana]
            gi|21280939|gb|AAM44989.1| putative aminolevulinate
            dehydratase [Arabidopsis thaliana]
            gi|21539421|gb|AAM53263.1| putative aminolevulinate
            dehydratase [Arabidopsis thaliana]
            gi|22136066|gb|AAM91111.1| putative aminolevulinate
            dehydratase [Arabidopsis thaliana]
          Length = 430

 Score =  400 bits (1029), Expect = e-110
 Identities = 197/316 (62%), Positives = 246/316 (77%)
 Frame = +1

Query: 160  RTGVPEGTPIVTPQDLPSRPRRNRRSESFRASVREVNVSPANFILPIFIHEESNQNVPIA 339
            +   P GTPI+ P +L  RPRRNR S   RA+ +E ++SPANF+ P+FIHE   ++ PI 
Sbjct: 89   KPAAPVGTPIIKPLNLSRRPRRNRASPVTRAAFQETDISPANFVYPLFIHE-GEEDTPIG 147

Query: 340  SMPGINRLAYGKNVIDYVAEARSYGVNQVVVFPKTPDHLKTQTAEEAFNKNGLSQRTIRL 519
            +MPG  RL +   ++  VA+AR+ GVN +V+FPK P+ LK  T +EA+N NGL  RTIRL
Sbjct: 148  AMPGCYRLGWRHGLVQEVAKARAVGVNSIVLFPKVPEALKNSTGDEAYNDNGLVPRTIRL 207

Query: 520  LKDSFPDLEVYTDVALDPYNSDGHDGIVSDAGVILNDETIEYLCRQAVSQAEAGADVVSP 699
            LKD +PDL +YTDVALDPY+SDGHDGIV + GVI+NDET+  LC+QAVSQA AGADVVSP
Sbjct: 208  LKDKYPDLIIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 267

Query: 700  SDMMDGRVGAIRRALDREGFTNVSIMSYTAKYASAYYGPFRDALASAPKPGQAHRRIPPN 879
            SDMMDGRVGAIR ALD EGF NVSIMSYTAKYAS++YGPFR+AL S P+ G        +
Sbjct: 268  SDMMDGRVGAIRSALDAEGFQNVSIMSYTAKYASSFYGPFREALDSNPRFG--------D 319

Query: 880  KKTYQMDPANYREAIREAKADEAEGADIMMVKPGMPYLDVVRLLRETSPLPVAVYHVSGE 1059
            KKTYQM+PANYREA+ EA+ DEAEGADI++VKPG+PYLD++RLLR+ SPLP+A Y VSGE
Sbjct: 320  KKTYQMNPANYREALIEAREDEAEGADILLVKPGLPYLDIIRLLRDKSPLPIAAYQVSGE 379

Query: 1060 YAMLKAAAERGWLNEK 1107
            Y+M+KA      ++E+
Sbjct: 380  YSMIKAGGVLKMIDEE 395

>sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chloroplast precursor
            (Porphobilinogen synthase) (ALADH) gi|7437030|pir||T06351
            porphobilinogen synthase (EC 4.2.1.24) - soybean
            gi|468000|gb|AAA18342.1| delta-aminolevulinic acid
            dehydratase
          Length = 412

 Score =  400 bits (1029), Expect = e-110
 Identities = 195/316 (61%), Positives = 249/316 (78%)
 Frame = +1

Query: 160  RTGVPEGTPIVTPQDLPSRPRRNRRSESFRASVREVNVSPANFILPIFIHEESNQNVPIA 339
            R   P GTP+V    L  RPRRNR+S + R++ +E ++SPANF+ P+FIHE   ++ PI 
Sbjct: 71   RPAAPVGTPVVPSLPLHRRPRRNRKSPALRSAFQETSISPANFVYPLFIHE-GEEDTPIG 129

Query: 340  SMPGINRLAYGKNVIDYVAEARSYGVNQVVVFPKTPDHLKTQTAEEAFNKNGLSQRTIRL 519
            +MPG  RL +   +++ VA+AR  GVN VV+FPK PD LK+ T +EA+N+NGL  RTIRL
Sbjct: 130  AMPGCYRLGWRHGLVEEVAKARDVGVNSVVLFPKIPDALKSPTGDEAYNENGLVPRTIRL 189

Query: 520  LKDSFPDLEVYTDVALDPYNSDGHDGIVSDAGVILNDETIEYLCRQAVSQAEAGADVVSP 699
            LKD +PDL +YTDVALDPY+SDGHDGIV + GVI+NDET+  LC+QAV+QA+AGADVVSP
Sbjct: 190  LKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQAQAGADVVSP 249

Query: 700  SDMMDGRVGAIRRALDREGFTNVSIMSYTAKYASAYYGPFRDALASAPKPGQAHRRIPPN 879
            SDMMDGRVGA+R ALD EGF +VSIMSYTAKYAS++YGPFR+AL S P+ G        +
Sbjct: 250  SDMMDGRVGALRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG--------D 301

Query: 880  KKTYQMDPANYREAIREAKADEAEGADIMMVKPGMPYLDVVRLLRETSPLPVAVYHVSGE 1059
            KKTYQM+PANYREA+ E + DE+EGADI++VKPG+PYLD++RLLR+ SPLP+A Y VSGE
Sbjct: 302  KKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGE 361

Query: 1060 YAMLKAAAERGWLNEK 1107
            YAM+KAA     ++E+
Sbjct: 362  YAMIKAAGALKMIDEE 377



EST assemble image


clone accession position
1 HC051b04_r AV635798 1 542
2 HC067e11_r AV637022 25 573
3 LCL002c03_r AV626090 70 490
4 LC031e02_r AV621118 71 592
5 MX225d01_r BP090536 76 534
6 HC045c02_r AV635347 80 603
7 LC036d10_r AV621460 109 631
8 LC092h12_r AV625463 114 316
9 LC081b12_r AV624685 148 703
10 LC057b05_r AV622964 186 717
11 MX045f12_r BP087882 275 624
12 MX006c08_r BP086307 447 833
13 HC024e10_r AV633731 551 996
14 CM012g08_r AV387152 592 1117
15 MX253h04_r BP092416 601 1094
16 CM082b11_r AV392126 672 1205
17 HC041h12_r AV635107 717 1118




Chlamydomonas reinhardtii
Kazusa DNA Research Institute