Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001041A_C01 KCC001041A_c01
(217 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07933 polyadenylate-binding protein RB47 precursor, chloro... 144 5e-34
ref|XP_324156.1| hypothetical protein [Neurospora crassa] gi|289... 55 2e-07
gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella... 55 3e-07
pir||S37085 polyadenylate-binding protein - fern (Anemia phyllit... 50 7e-06
ref|NP_177322.1| polyadenylate-binding protein 5 (PABP5) [Arabid... 50 1e-05
>pir||T07933 polyadenylate-binding protein RB47 precursor, chloroplast -
Chlamydomonas reinhardtii gi|2935338|gb|AAC39368.1|
poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 144 bits (362), Expect = 5e-34
Identities = 70/72 (97%), Positives = 70/72 (97%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 KGKPLYVALAQRKDVRRA-QLEANMHARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGG 179
KGKPLYVALAQRKDVRRA QLEANM ARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGG
Sbjct: 374 KGKPLYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGG 433
Query: 180 MAAGPRAPGMMY 215
MAAGPRAPGMMY
Sbjct: 434 MAAGPRAPGMMY 445
>ref|XP_324156.1| hypothetical protein [Neurospora crassa] gi|28921916|gb|EAA31189.1|
hypothetical protein [Neurospora crassa]
Length = 764
Score = 55.5 bits (132), Expect = 2e-07
Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = +3
Query: 6 GKPLYVALAQRKDVRRAQLEANMHAR------MGMGAMSRPPNPMAGMSPYPGAMPFFAP 167
GKPLYVALAQRKDVR++QLEA++ AR P M Y G P F P
Sbjct: 452 GKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAQAGMPQQYMQAPVYYAGQQPGFMP 511
Query: 168 GPGG 179
PGG
Sbjct: 512 APGG 515
>gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 55.1 bits (131), Expect = 3e-07
Identities = 36/77 (46%), Positives = 42/77 (53%), Gaps = 8/77 (10%)
Frame = +3
Query: 6 GKPLYVALAQRKDVRRAQLEANMHARMGMGAMSRPPNPMAGM-SPYPGAMPFFAPGPGGM 182
GKPLYVALAQRKDVRR+QLEA++ AR + + AGM Y F+ PG G
Sbjct: 444 GKPLYVALAQRKDVRRSQLEASIQARNNI--RQQQAAAAAGMGQAYMAPAVFYGPGQQGF 501
Query: 183 AAG-------PRAPGMM 212
G P PGMM
Sbjct: 502 IPGAQRGGMFPPQPGMM 518
>pir||S37085 polyadenylate-binding protein - fern (Anemia phyllitidis)
gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein
[Anemia phyllitidis]
Length = 638
Score = 50.4 bits (119), Expect = 7e-06
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Frame = +3
Query: 9 KPLYVALAQRKDVRRAQLEANMHARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGGMA- 185
KPLYVALAQRK+ RRA+L+A A+M + A + PP M+P P +M + PGP GM
Sbjct: 375 KPLYVALAQRKEERRARLQAQF-AQMQIVAPNAPP-----MAPNPPSM--YHPGPQGMGH 426
Query: 186 ---AGPRAPGMM 212
G APG++
Sbjct: 427 QMFYGQPAPGLL 438
>ref|NP_177322.1| polyadenylate-binding protein 5 (PABP5) [Arabidopsis thaliana]
gi|21542448|sp|Q05196|PAB5_ARATH Polyadenylate-binding
protein 5 (Poly(A)-binding protein 5) (PABP 5)
gi|25294314|pir||B96740 hypothetical protein F14O23.15
[imported] - Arabidopsis thaliana
gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the
polyadenylate-binding protein 5 (PAB5) from Arabidopsis
thaliana gb|M97657
Length = 668
Score = 50.1 bits (118), Expect = 1e-05
Identities = 28/65 (43%), Positives = 36/65 (55%)
Frame = +3
Query: 9 KPLYVALAQRKDVRRAQLEANMHARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGGMAA 188
KPLYVALAQRK+ R+A L++ G MS P+PM+G +P PGG +
Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHP---------PGGPMS 446
Query: 189 GPRAP 203
GP P
Sbjct: 447 GPHHP 451
