KCC001022A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001022A_C01 KCC001022A_c01
CATAGATCGCCTTTGCGCTCGCAACTCCCCGTTGCTTTTGAGCCCTCGCCGCCCTCTGCG
CCCTCCTCGCTGTAACGCAAGAACCTTCTTCACCAAAGATGGCCATCAAGATGAACCTCG
CCTCCTCCAAGGTCGGCGCCAAGGCCTCCGCCAAGTCCGTCCGCGGCGCCCGCCTGGTGG
CCCGTGTGGCCCAGCCCATGTCCCCCAGCAGCTGCCGCCACCGCCGCCGCCGATGCCTCC
ATGCTGGCCCGCGCCGGCCTGCCGCCCACCACCACCCCCTACGACGACTACAAGTTCGCG
CCCATCCGTGAGGCCGAGGTCAACCGCGCCATGACCCGCCGCTACTTCAAGGACATGGAC
GAGTTCGCCGAGTCCGACGTGGTCATCGTGGGCGCCGGCAGCGCCGGCCTGGCCTGCGCC
TTCGAGCTGGGCCGCATCGCGCCCCACCTGAAGGTGGCTGCTGATGGAGCAGTCTGTGGC
CCCCGGCGGCGGCGCCTGGCTGGGCGGGCAGCTGTTCAGCTGCCATGGTGGTGCGCAAGC
CCGCCCACGAGATGCTGGACGCCCTGCAGGTGCCCTACGAGGACGAGGGCCACTACGTGG
TGGTGCGCCACGCCGCCCTGCTGACCTCCACCCTGATGAGCCACGTGCTCAAGAACCCCA
ACGTCAAGCTGTTCAACGCCACCGCTGTGGAGGACTTGATCGTGACGCCCGACCCCGCCC
TGGGCCCCGGCGCGCGCCGCGTGGCGGGCGTGGTGACCAACTGGTCGCTGGTGGCGCAGG
CGCACGGCACCCAGTCGTGCATGGACCCCAACGTCATTGAGGCGGGCGTGGTCGTGTCTG
ACTGCGGACACGACGGGCCCTTCGGCGCCACCGGCGTGCAGCGCCTGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001022A_C01 KCC001022A_c01
         (890 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q41738|TH41_MAIZE Thiazole biosynthetic enzyme 1-1, chloropla...   160  4e-54
dbj|BAA88227.1| thiamin biosynthetic enzyme [Glycine max]             161  9e-54
ref|NP_011660.1| Protein highly expressed in early stationary ph...   153  9e-54
sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplast p...   161  2e-53
dbj|BAA88226.1| thiamin biosynthetic enzyme [Glycine max]             162  2e-53

>sp|Q41738|TH41_MAIZE Thiazole biosynthetic enzyme 1-1, chloroplast precursor
           gi|2130146|pir||S61419 thiamin biosynthesis protein
           thi1-1 - maize gi|596078|gb|AAA96738.1| thiamine
           biosynthetic enzyme
          Length = 354

 Score =  160 bits (404), Expect(2) = 4e-54
 Identities = 84/135 (62%), Positives = 95/135 (70%)
 Frame = +3

Query: 483 PAAAPGWAGSCSAAMVVRKPAHEMLDALQVPYEDEGHYVVVRHAALLTSTLMSHVLKNPN 662
           P       G   +AMVVRKPAH  LD L V Y++   YVV++HAAL TST+MS +L  PN
Sbjct: 125 PGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPN 184

Query: 663 VKLFNATAVEDLIVTPDPALGPGARRVAGVVTNWSLVAQAHGTQSCMDPNVIEAGVVVSD 842
           VKLFNA AVEDLIV           RV GVVTNW+LV+  H TQSCMDPNV+EA VVVS 
Sbjct: 185 VKLFNAVAVEDLIVR--------GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 236

Query: 843 CGHDGPFGATGVQRL 887
           CGHDGPFGATGV+RL
Sbjct: 237 CGHDGPFGATGVKRL 251

 Score = 74.7 bits (182), Expect(2) = 4e-54
 Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
 Frame = +1

Query: 160 SAAPAWWPVWPSPCPPAAAATAAADASMLARAGLPPTTTPYD--DYKFAPIREAEVNRAM 333
           S  PA     P+    A     A    + A   +  +  PYD   ++F+PI+E+ V+R M
Sbjct: 17  SRLPAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREM 76

Query: 334 TRRYFKDMDEFAESDVVIVGAGSAGLACAFELGR 435
           TRRY  DM  +A++DVVIVGAGSAGL+CA+EL +
Sbjct: 77  TRRYMTDMITYADTDVVIVGAGSAGLSCAYELSK 110

 Score = 42.0 bits (97), Expect = 0.014
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +2

Query: 461 LMEQSVAPGGGAWLGGQLFS 520
           ++EQSV+PGGGAWLGGQLFS
Sbjct: 118 IVEQSVSPGGGAWLGGQLFS 137

>dbj|BAA88227.1| thiamin biosynthetic enzyme [Glycine max]
          Length = 345

 Score =  161 bits (408), Expect(2) = 9e-54
 Identities = 83/135 (61%), Positives = 96/135 (70%)
 Frame = +3

Query: 483 PAAAPGWAGSCSAAMVVRKPAHEMLDALQVPYEDEGHYVVVRHAALLTSTLMSHVLKNPN 662
           P       G   +AMVVRKPAH  LD L V Y+++ +YVV++HAAL TST+MS +L  PN
Sbjct: 117 PGGGAWLGGQLFSAMVVRKPAHLFLDELNVEYDEQDNYVVIKHAALFTSTIMSKLLARPN 176

Query: 663 VKLFNATAVEDLIVTPDPALGPGARRVAGVVTNWSLVAQAHGTQSCMDPNVIEAGVVVSD 842
           VKLFNA A EDLIV           RV GVVTNW+LV+  H TQSCMDPNV+EA VVVS 
Sbjct: 177 VKLFNAVAAEDLIVKNG--------RVGGVVTNWALVSLNHDTQSCMDPNVMEAKVVVSS 228

Query: 843 CGHDGPFGATGVQRL 887
           CGHDGPFGATGV+RL
Sbjct: 229 CGHDGPFGATGVKRL 243

 Score = 72.0 bits (175), Expect(2) = 9e-54
 Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
 Frame = +1

Query: 250 RAGLPPTTTPYD--DYKFAPIREAEVNRAMTRRYFKDMDEFAESDVVIVGAGSAGLACAF 423
           RA +  +  PYD   ++F PIRE+ V+R MTRRY  DM   A++DVVIVGAGSAGL+CA+
Sbjct: 39  RASMSASAPPYDFGSFRFDPIRESIVSREMTRRYMIDMVTHADTDVVIVGAGSAGLSCAY 98

Query: 424 ELGRIAPHLKVA 459
           EL +  P + +A
Sbjct: 99  ELSK-NPSINIA 109

 Score = 42.4 bits (98), Expect = 0.011
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +2

Query: 434 ASRPT*RWLLMEQSVAPGGGAWLGGQLFS 520
           +  P+    ++EQSV+PGGGAWLGGQLFS
Sbjct: 101 SKNPSINIAIVEQSVSPGGGAWLGGQLFS 129

>ref|NP_011660.1| Protein highly expressed in early stationary phase during growth on
           molasses; Thi4p [Saccharomyces cerevisiae]
           gi|417307|sp|P32318|THI4_YEAST Thiazole biosynthetic
           enzyme, mitochondrial precursor gi|283204|pir||S25321
           thiamin biosynthesis protein thi4 - yeast (Saccharomyces
           cerevisiae) gi|4589|emb|CAA43843.1| ESP35 protein
           [Saccharomyces cerevisiae] gi|1323242|emb|CAA97157.1|
           THI4 [Saccharomyces cerevisiae]
          Length = 326

 Score =  153 bits (386), Expect(2) = 9e-54
 Identities = 85/153 (55%), Positives = 100/153 (64%), Gaps = 19/153 (12%)
 Frame = +3

Query: 486 AAAPG---W-AGSCSAAMVVRKPAHEMLDALQVPYEDEGHYVVVRHAALLTSTLMSHVLK 653
           + APG   W  G   +AMV+RKPAH  L  L++PYEDEG YVVV+HAAL  ST++S VL+
Sbjct: 99  SVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQ 158

Query: 654 NPNVKLFNATAVEDLIVTPDPALGPGARRVAGVVTNWSLVAQAHGTQSCMDPNVIEA--- 824
            PNVKLFNAT VEDL+  P      G   VAGVVTNW+LV QAHGTQ CMDPNVIE    
Sbjct: 159 LPNVKLFNATCVEDLVTRPPTE--KGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGY 216

Query: 825 ------------GVVVSDCGHDGPFGATGVQRL 887
                       GV++S  GHDGPFGA   +R+
Sbjct: 217 KNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRI 249

 Score = 80.5 bits (197), Expect(2) = 9e-54
 Identities = 37/59 (62%), Positives = 49/59 (82%)
 Frame = +1

Query: 280 YDDYKFAPIREAEVNRAMTRRYFKDMDEFAESDVVIVGAGSAGLACAFELGRIAPHLKV 456
           + D+KFAPIRE+ V+RAMT RYFKD+D+FA SDV+IVGAGS+GL+ A+ + +  P LKV
Sbjct: 35  WSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 93

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/30 (63%), Positives = 24/30 (79%)
 Frame = +2

Query: 431 AASRPT*RWLLMEQSVAPGGGAWLGGQLFS 520
           A +RP  +  ++E SVAPGGG+WLGGQLFS
Sbjct: 85  AKNRPDLKVCIIESSVAPGGGSWLGGQLFS 114

>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplast precursor
           gi|7446894|pir||T10474 thiamin biosynthesis protein thi1
           - sweet orange gi|2582665|emb|CAB05370.1| thi [Citrus
           sinensis]
          Length = 356

 Score =  161 bits (408), Expect(2) = 2e-53
 Identities = 82/135 (60%), Positives = 96/135 (70%)
 Frame = +3

Query: 483 PAAAPGWAGSCSAAMVVRKPAHEMLDALQVPYEDEGHYVVVRHAALLTSTLMSHVLKNPN 662
           P       G   +AMVVRKPAH  LD L + Y+++ +YVV++HAAL TST+MS +L  PN
Sbjct: 126 PGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPN 185

Query: 663 VKLFNATAVEDLIVTPDPALGPGARRVAGVVTNWSLVAQAHGTQSCMDPNVIEAGVVVSD 842
           VKLFNA A EDLIV           RV GVVTNW+LV+  H TQSCMDPNV+EA VVVS 
Sbjct: 186 VKLFNAVAAEDLIVK--------GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 843 CGHDGPFGATGVQRL 887
           CGHDGPFGATGV+RL
Sbjct: 238 CGHDGPFGATGVKRL 252

 Score = 71.2 bits (173), Expect(2) = 2e-53
 Identities = 35/63 (55%), Positives = 50/63 (78%), Gaps = 2/63 (3%)
 Frame = +1

Query: 277 PYD--DYKFAPIREAEVNRAMTRRYFKDMDEFAESDVVIVGAGSAGLACAFELGRIAPHL 450
           PYD   +KF PI+E+ V+R MTRRY  DM  +A++DVV+VGAGSAGL+CA+EL +  P++
Sbjct: 57  PYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNI 115

Query: 451 KVA 459
           ++A
Sbjct: 116 QIA 118

 Score = 42.4 bits (98), Expect = 0.011
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +2

Query: 434 ASRPT*RWLLMEQSVAPGGGAWLGGQLFS 520
           +  P  +  ++EQSV+PGGGAWLGGQLFS
Sbjct: 110 SKNPNIQIAIIEQSVSPGGGAWLGGQLFS 138

>dbj|BAA88226.1| thiamin biosynthetic enzyme [Glycine max]
          Length = 349

 Score =  162 bits (409), Expect(2) = 2e-53
 Identities = 83/135 (61%), Positives = 97/135 (71%)
 Frame = +3

Query: 483 PAAAPGWAGSCSAAMVVRKPAHEMLDALQVPYEDEGHYVVVRHAALLTSTLMSHVLKNPN 662
           P       G   +AMVVRKPAH  LD L + Y+++ +YVV++HAALLTST+MS +L  PN
Sbjct: 121 PGGGAWLGGQLFSAMVVRKPAHLFLDELGLEYDEQDNYVVIKHAALLTSTIMSKLLARPN 180

Query: 663 VKLFNATAVEDLIVTPDPALGPGARRVAGVVTNWSLVAQAHGTQSCMDPNVIEAGVVVSD 842
           VKLFNA A EDLIV           RV GVVTNW+LV+  H TQSCMDPNV+EA VVVS 
Sbjct: 181 VKLFNAVAAEDLIVKNG--------RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 232

Query: 843 CGHDGPFGATGVQRL 887
           CGHDGPFGATGV+RL
Sbjct: 233 CGHDGPFGATGVKRL 247

 Score = 70.9 bits (172), Expect(2) = 2e-53
 Identities = 40/69 (57%), Positives = 50/69 (71%), Gaps = 2/69 (2%)
 Frame = +1

Query: 235 ASMLARAGLPPTTTPYD--DYKFAPIREAEVNRAMTRRYFKDMDEFAESDVVIVGAGSAG 408
           ASM A A  PP   PYD   ++F PIRE+ V+R MTRRY  DM   A++DVV+VGAGSAG
Sbjct: 43  ASMSAAA--PP---PYDFGSFRFEPIRESIVSREMTRRYMTDMVTHADTDVVVVGAGSAG 97

Query: 409 LACAFELGR 435
           L+CA+EL +
Sbjct: 98  LSCAYELSK 106

 Score = 42.4 bits (98), Expect = 0.011
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +2

Query: 434 ASRPT*RWLLMEQSVAPGGGAWLGGQLFS 520
           +  P+    ++EQSV+PGGGAWLGGQLFS
Sbjct: 105 SKNPSVNIAIVEQSVSPGGGAWLGGQLFS 133



EST assemble image


clone accession position
1 HC064h12_r AV636843 1 659
2 MX212e12_r BP089703 11 427
3 MXL045d05_r BP095661 101 561
4 LC099g05_r AV625913 103 506
5 MX001d12_r BP086077 104 542
6 LCL092h11_r AV631380 104 564
7 HC026e05_r AV633887 104 612
8 MX210g07_r BP089619 106 306
9 HCL037c01_r AV641604 106 530
10 MX244h12_r BP091832 107 611
11 CM023b02_r AV387809 107 738
12 MX245e11_r BP091874 107 559
13 HC081h11_r AV638101 109 260
14 HC062g08_r AV636682 110 644
15 HC008a11_r AV632425 114 558
16 MX015g03_r BP086741 116 440
17 MX217c07_r BP090003 117 441
18 MX254c12_r BP092443 118 602
19 MX241c01_r BP091574 118 484
20 MX001b07_r BP086059 122 543
21 HCL015b10_r AV640377 124 371
22 MXL096e10_r BP098631 124 483
23 HC023d04_r AV633641 124 439
24 CM010d07_r AV387000 124 491
25 MX055a10_r BP088237 124 466
26 MX021a05_r BP086942 125 536
27 MX042b10_r BP087717 203 588
28 HC028b05_r AV634015 305 667
29 HC018h10_r AV633283 530 981
30 CM079b07_r AV391938 572 1040




Chlamydomonas reinhardtii
Kazusa DNA Research Institute