Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001017A_C01 KCC001017A_c01
(1496 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S04125 chlorophyll a/b-binding protein type III precursor -... 314 3e-84
sp|P27522|CB13_LYCES Chlorophyll A-B binding protein 8, chloropl... 312 1e-83
pir||S17696 chlorophyll a/b-binding protein (clone pINEab 43) - ... 311 2e-83
gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein 310 3e-83
ref|NP_176347.1| light-harvesting chlorophyll a/b binding protei... 310 6e-83
>pir||S04125 chlorophyll a/b-binding protein type III precursor - tomato
gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 314 bits (804), Expect = 3e-84
Identities = 161/261 (61%), Positives = 193/261 (73%), Gaps = 2/261 (0%)
Frame = +3
Query: 27 LTKSAQAA--FSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGS 200
++ SA+AA G + +A V RA K ++ + AS+ SL+YLDGS
Sbjct: 12 ISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWF--ASKQSLSYLDGS 69
Query: 201 LPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDA 380
LPGDFGFDPLGL DP +GGFIEPKWL Y EVI+ R+AMLGAAG IAPE+LG AGLIP
Sbjct: 70 LPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQE 129
Query: 381 TNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGL 560
T + WF++GVIPPAG+YN YWAD YT+F +E+ M FAE RR QD+ PGSMG+QYFLGL
Sbjct: 130 TALAWFQTGVIPPAGTYN-YWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGL 188
Query: 561 EAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGK 740
E GSGD AYPGGP FN GK E +MKELKLKEIKNGRLAMLA+LGY QA++TG
Sbjct: 189 EKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGV 248
Query: 741 GPFQNLVEHLADPVNNNILTN 803
GP+QNL++HLADPVNNN+LT+
Sbjct: 249 GPYQNLLDHLADPVNNNVLTS 269
>sp|P27522|CB13_LYCES Chlorophyll A-B binding protein 8, chloroplast precursor (LHCI type
III CAB-8) gi|19182|emb|CAA33330.1| Type III chlorophyll
a/b-binding protein [Lycopersicon esculentum]
Length = 273
Score = 312 bits (799), Expect = 1e-83
Identities = 160/261 (61%), Positives = 192/261 (73%), Gaps = 2/261 (0%)
Frame = +3
Query: 27 LTKSAQAA--FSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGS 200
++ SA+AA G + +A V RA K ++ + AS+ SL+YLDG
Sbjct: 12 ISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWF--ASKQSLSYLDGR 69
Query: 201 LPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDA 380
LPGDFGFDPLGL DP +GGFIEPKWL Y EVI+ R+AMLGAAG IAPE+LG AGLIP
Sbjct: 70 LPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQE 129
Query: 381 TNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGL 560
T + WF++GVIPPAG+YN YWAD YT+F +E+ M FAE RR QD+ PGSMG+QYFLGL
Sbjct: 130 TALAWFQTGVIPPAGTYN-YWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGL 188
Query: 561 EAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGK 740
E GSGD AYPGGP FN GK E +MKELKLKEIKNGRLAMLA+LGY QA++TG
Sbjct: 189 EKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGV 248
Query: 741 GPFQNLVEHLADPVNNNILTN 803
GP+QNL++HLADPVNNN+LT+
Sbjct: 249 GPYQNLLDHLADPVNNNVLTS 269
>pir||S17696 chlorophyll a/b-binding protein (clone pINEab 43) - Scotch pine
gi|20794|emb|CAA41407.1| Type III chlorophyll a
/b-binding protein [Pinus sylvestris]
Length = 286
Score = 311 bits (797), Expect = 2e-83
Identities = 151/241 (62%), Positives = 183/241 (75%)
Frame = +3
Query: 81 ANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDFGFDPLGLLDPVNSGG 260
+ R R++ S V + QL+ AS SL+YLDGSLPGD+GFDPLGL+DP GG
Sbjct: 44 SRRTSFTVRSQASSNKPVKQGDRQLWF-ASDQSLSYLDGSLPGDYGFDPLGLMDPEGPGG 102
Query: 261 FIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGY 440
F+EP WL Y E+I+ R+AMLGA G IAPE+LG GLIP T + WF++GVIPPAG+YN Y
Sbjct: 103 FMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYN-Y 161
Query: 441 WADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNL 620
WADP+T+F +E+ M FAE RRLQD+R PGSMG+QYFLGLE GSG+ AYPGGP FN
Sbjct: 162 WADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNP 221
Query: 621 FNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILT 800
GK E +MKELKLKE+KNGRLAMLA+LGY Q ++TG GPFQNL++HLADPV+NN LT
Sbjct: 222 LGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLT 281
Query: 801 N 803
N
Sbjct: 282 N 282
>gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein
Length = 273
Score = 310 bits (795), Expect = 3e-83
Identities = 158/266 (59%), Positives = 196/266 (73%), Gaps = 3/266 (1%)
Frame = +3
Query: 15 ITMMLTKSAQAA---FSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLA 185
++ LT S Q A F K A ++ V +A K ++ L+V +SQS L+
Sbjct: 7 VSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAAAPPVKQGANRP-LWVASSQS-LS 64
Query: 186 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAG 365
YLDGSLPGD+GFDPLGL DP +GGFIEP+WL Y E+I+ R+AMLGAAG IAPE+LG AG
Sbjct: 65 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
Query: 366 LIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQ 545
LIP T + WF++GVIPPAG+Y YWAD YT+F +E+ M FAE RRLQD+ PGSMG+Q
Sbjct: 125 LIPAETALPWFQTGVIPPAGTYT-YWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ 183
Query: 546 YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQA 725
YFLGLE GSG+ AYPGGPFFN GK E ++KELKLKE+KNGRLAMLA+LGY Q
Sbjct: 184 YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQG 243
Query: 726 VMTGKGPFQNLVEHLADPVNNNILTN 803
++TG GP+QNL++HLADPVNNN+LT+
Sbjct: 244 LVTGVGPYQNLLDHLADPVNNNVLTS 269
>ref|NP_176347.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|25299020|pir||E96640 PSI type III
chlorophyll a/b-binding protein [imported] - Arabidopsis
thaliana gi|4585882|gb|AAD25555.1|AC005850_12 PSI type
III chlorophyll a/b-binding protein [Arabidopsis
thaliana] gi|16649019|gb|AAL24361.1| PSI type III
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 310 bits (793), Expect = 6e-83
Identities = 156/266 (58%), Positives = 193/266 (71%), Gaps = 3/266 (1%)
Frame = +3
Query: 15 ITMMLTKSAQAA---FSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLA 185
++ LT S Q A F K A ++ V +A K ++ + AS SL+
Sbjct: 7 VSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWF--ASSQSLS 64
Query: 186 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAG 365
YLDGSLPGD+GFDPLGL DP +GGFIEP+WL Y E+I+ R+AMLGAAG IAPE+LG AG
Sbjct: 65 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
Query: 366 LIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQ 545
LIP T + WF++GVIPPAG+Y YWAD YT+F +E+ M FAE RRLQD+ PGSMG+Q
Sbjct: 125 LIPAETALPWFQTGVIPPAGTYT-YWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ 183
Query: 546 YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQA 725
YFLGLE GSG+ AYPGGPFFN GK E ++KELKLKE+KNGRLAMLA+LGY Q
Sbjct: 184 YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQG 243
Query: 726 VMTGKGPFQNLVEHLADPVNNNILTN 803
++TG GP+QNL++HLADPVNNN+LT+
Sbjct: 244 LVTGVGPYQNLLDHLADPVNNNVLTS 269
