KCC000977A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000977A_C01 KCC000977A_c01
tcccaATCCACCACACAAGTAGTCAGACAGCATGGCCCTCATGATGCAGAAGGTTGCTGC
TCCGGTCTCTCGCCGGGGCATGAAGGTGGTCGCGCAGGCGACCCCCAACACCGCCTCGCG
TCGTGCTATTCTGGGCGTGGCGCTGCTGCCCGCGCTGATGTATGCCCCCAAGGCTCTGGC
CCTGATTCCTGACGAGGAGGATGAGGACCTGGTGGAGAAGGCGAAGGCCAACCGCCGCGC
CCTGCCTGGCGCAGCAGCGCGGCGTGACCCGCGACTTCATGGCCAGCGAGAACCTGACCG
ACCGCCGCCTGGAGCAGGAGCTGGTGCCGGTGCAGAAGGCCGTGTACAAGCTGGCCAAGA
GCGGCAGCCAGCTGGAGAGCGGCGACCTGAAGGGCGCGGCCAGCACCCTGTCCGAGTCCT
GGGTGGGCGACTTCAGCACCGTCGCCTCCACCGTGTCCGGCAGCACCACCGCCGGCAAGC
TGGTGGAGGCCATCAAGAGCGTGCAAGCCGCCGCCGCCAAGGGCGACGCCGCCGGCTCCA
AGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000977A_C01 KCC000977A_c01
         (545 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC82365.1| unknown [Myxococcus xanthus]                            55  5e-07
pir||A48232 cysteine-rich extensin-like protein 1 precursor - co...    55  8e-07
emb|CAA78398.1| Pistil extensin like protein, partial CDS only [...    55  8e-07
gb|AAC33847.1| nongradient byssal precursor [Mytilus edulis]           53  2e-06
ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens]         53  3e-06

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 55.5 bits (132), Expect = 5e-07
 Identities = 50/147 (34%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
 Frame = +1

Query: 121 SCYSGRGAAARADVCPQGSGPDS*RGG*GPGGEGEGQPPRPAWRSSAA*PATSWPAR-T* 297
           +C +   ++  +  CP G      R G  PG    G  P P  +S +  PA+S   R T 
Sbjct: 142 TCPTAGPSSCASGCCPTG------RCGSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTH 195

Query: 298 PTAAWSRSWCRCRRPCTSWPRAAASWRAAT*RARPAPCPSPGWATSAPSPPPCPAAPPPA 477
           P  A + +       C   PR     R  T  AR AP   P  + S P PP  P  PP A
Sbjct: 196 PRPARASAAGATAPACLPPPRCCG--RPGTGCARTAP---PSTSASHPPPPRSPGTPPRA 250

Query: 478 SWWR------PSRACKPPPPRATPPAP 540
           S         PS AC+PPPP  T PAP
Sbjct: 251 SGSPAAAPAPPSPACRPPPP-GTTPAP 276

 Score = 35.4 bits (80), Expect = 0.50
 Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = -3

Query: 489 PPPAC----RRWCCRTRWRRRC*SRPPRTRT-GCWPRPSGRRSPAGCRSWPACTRPSAPA 325
           PPP C       C RT       S PP  R+ G  PR SG  + A     PAC RP  P 
Sbjct: 213 PPPRCCGRPGTGCARTAPPSTSASHPPPPRSPGTPPRASGSPAAAPAPPSPAC-RPPPPG 271

Query: 324 PAPAP 310
             PAP
Sbjct: 272 TTPAP 276

 Score = 32.3 bits (72), Expect = 4.2
 Identities = 40/126 (31%), Positives = 45/126 (34%), Gaps = 23/126 (18%)
 Frame = +1

Query: 235 PRPAWRSSAA*PATSWPART*PTAAWSRSW-------CRCRRPCTSWPRAAASWRAAT*R 393
           P  A RS    PA S  AR  P     R          RC  PC + PR  A   A    
Sbjct: 79  PTCARRSGRRCPAPSRHARRNPAGPSRRCGPPRKSTPTRCCTPCPAPPRCRARPSAPAPS 138

Query: 394 AR-------PAPCPS----PGWATSAPSPPPCPAAPPPASWWRPSRACKPPPP-----RA 525
           A        P+ C S     G   SAP P P  A P P     PS++  P P      R 
Sbjct: 139 AGRTCPTAGPSSCASGCCPTGRCGSAPGPTPHGAEPSP-----PSQSPSPAPASSGGRRR 193

Query: 526 TPPAPS 543
           T P P+
Sbjct: 194 THPRPA 199

 Score = 32.0 bits (71), Expect(2) = 0.009
 Identities = 26/83 (31%), Positives = 33/83 (39%)
 Frame = -3

Query: 486 PPACRRWCCRTRWRRRC*SRPPRTRTGCWPRPSGRRSPAGCRSWPACTRPSAPAPAPAPG 307
           P +C   CC T    RC S P  T  G  P P  +                +P+PAPA  
Sbjct: 148 PSSCASGCCPTG---RCGSAPGPTPHGAEPSPPSQ----------------SPSPAPASS 188

Query: 306 GGRSGSRWP*SRGSRRAAAPGRA 238
           GGR  +     R +R +AA   A
Sbjct: 189 GGRRRTH---PRPARASAAGATA 208

 Score = 31.6 bits (70), Expect = 7.2
 Identities = 54/173 (31%), Positives = 62/173 (35%), Gaps = 20/173 (11%)
 Frame = +1

Query: 70  SPGHEGGRAGDPQHRLASCYSGRGAAARADVCPQGSGPDS*RGG*GPGGEGEG----QPP 237
           S G     AG        C +GR  +A     P G+ P        P     G      P
Sbjct: 138 SAGRTCPTAGPSSCASGCCPTGRCGSAPGPT-PHGAEPSPPSQSPSPAPASSGGRRRTHP 196

Query: 238 RPAWRSSAA*PATSWPART*PTAAWSRSWCRCRR---PCTSW------------PRAAAS 372
           RPA R+SAA    + PA   P     R    C R   P TS             PRA+ S
Sbjct: 197 RPA-RASAA--GATAPACLPPPRCCGRPGTGCARTAPPSTSASHPPPPRSPGTPPRASGS 253

Query: 373 WRAAT*RARPAPCPSPGWATSAPSPPPCPAAPPPASWWRPSRAC-KPPPPRAT 528
             AA     PAP PSP     A  PPP    P P +   P+  C  P   RAT
Sbjct: 254 PAAA-----PAP-PSP-----ACRPPPPGTTPAPRNAALPALPCISPSRQRAT 295

 Score = 31.2 bits (69), Expect = 9.5
 Identities = 28/89 (31%), Positives = 33/89 (36%), Gaps = 2/89 (2%)
 Frame = -3

Query: 492 WPPPACRRWCCRTRWRRRC*SRPPRTRTGCWPRPSGRRSPAGCRSWPACTRPSAPAPAPA 313
           +PPP      C    R    +RPP T T  +P P     P   R+      P +P P   
Sbjct: 20  FPPP------CLLSERTPPGARPPPTETASYPPPQAVPGPCAPRA-----PPRSPPPRRR 68

Query: 312 PGGGRSGSRWP--*SRGSRRAAAPGRARR 232
             G R  S  P    R  RR  AP R  R
Sbjct: 69  HRGSRHRSFRPTCARRSGRRCPAPSRHAR 97

 Score = 29.6 bits (65), Expect(2) = 0.084
 Identities = 27/95 (28%), Positives = 29/95 (30%), Gaps = 23/95 (24%)
 Frame = -1

Query: 248 QAGRGGWPSPSPPGPHPPRQESGPEPWGHTSARAAAPRPE*HDAR-----------RCWG 102
           + G    P+P    P PP Q   P P      R   PRP    A            RC G
Sbjct: 160 RCGSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTHPRPARASAAGATAPACLPPPRCCG 219

Query: 101 SP------ARPPSC------PGERPEQQPSAS*GP 33
            P        PPS       P   P   P AS  P
Sbjct: 220 RPGTGCARTAPPSTSASHPPPPRSPGTPPRASGSP 254

 Score = 28.5 bits (62), Expect(2) = 0.009
 Identities = 20/59 (33%), Positives = 24/59 (39%)
 Frame = -1

Query: 221 PSPPGPHPPRQESGPEPWGHTSARAAAPRPE*HDARRCWGSPARPPSCPGERPEQQPSA 45
           PS    HPP   S   P   + + AAAP P          SPA  P  PG  P  + +A
Sbjct: 231 PSTSASHPPPPRSPGTPPRASGSPAAAPAPP---------SPACRPPPPGTTPAPRNAA 280

 Score = 27.3 bits (59), Expect(2) = 0.084
 Identities = 29/84 (34%), Positives = 32/84 (37%), Gaps = 19/84 (22%)
 Frame = -3

Query: 489 PPPACRRWCCRTR-WRRRC*SRPPRTRTGCWPRPS--GRRSPAG---------------- 367
           PPP  R    R R +R  C  R  R      P PS   RR+PAG                
Sbjct: 63  PPPRRRHRGSRHRSFRPTCARRSGRR----CPAPSRHARRNPAGPSRRCGPPRKSTPTRC 118

Query: 366 CRSWPACTRPSAPAPAPAPGGGRS 295
           C   PA  R  A   APAP  GR+
Sbjct: 119 CTPCPAPPRCRARPSAPAPSAGRT 142

>pir||A48232 cysteine-rich extensin-like protein 1 precursor - common tobacco
           gi|310923|gb|AAA34059.1| cysteine-rich extensin-like
           protein-1
          Length = 209

 Score = 54.7 bits (130), Expect = 8e-07
 Identities = 36/92 (39%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +1

Query: 277 SWPART*PTAAWSRSWCRCR---RPCTSWPRAAASWRAAT*RARPAPCPSPGWATSAPSP 447
           +WP    P   W     R R   RPC S P             RP PCPSP      P P
Sbjct: 54  TWPFPWPPPPPWPCPPPRPRPRPRPCPSPPPPP----------RPRPCPSP---PPPPRP 100

Query: 448 PPCPAAPPPASWWRPSRACKPPPPRATPPAPS 543
            PCP+ PPP    +P     PPPP   PPAPS
Sbjct: 101 RPCPSPPPPP---QPRPRPSPPPPSPPPPAPS 129

 Score = 35.4 bits (80), Expect = 0.50
 Identities = 28/69 (40%), Positives = 29/69 (41%), Gaps = 8/69 (11%)
 Frame = -3

Query: 492 WPPPACRRWCC---RTRWRRR-C*SRPPRTRTGCWPRPSGRRSPAGCRSWPACT----RP 337
           WPPP    W C   R R R R C S PP  R    P P     P  C S P       RP
Sbjct: 59  WPPPP--PWPCPPPRPRPRPRPCPSPPPPPRPRPCPSPPPPPRPRPCPSPPPPPQPRPRP 116

Query: 336 SAPAPAPAP 310
           S P P+P P
Sbjct: 117 SPPPPSPPP 125

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
 Frame = -1

Query: 230 WPSPSPPGP----HPPRQESGPEPWGHTSARAAAPRPE*HDARRCWG--SPARPPSCPGE 69
           WP P PP P     PPR    P P     +    PRP     R C     P RP  CP  
Sbjct: 55  WPFPWPPPPPWPCPPPRPRPRPRP---CPSPPPPPRP-----RPCPSPPPPPRPRPCPSP 106

Query: 68  RPEQQP 51
            P  QP
Sbjct: 107 PPPPQP 112

 Score = 32.0 bits (71), Expect = 5.5
 Identities = 24/71 (33%), Positives = 27/71 (37%)
 Frame = -1

Query: 227 PSPSPPGPHPPRQESGPEPWGHTSARAAAPRPE*HDARRCWGSPARPPSCPGERPEQQPS 48
           P PSPP P  PR    P P          PRP     R C   P  PP  P  RP   P 
Sbjct: 78  PCPSPPPPPRPRPCPSPPP---------PPRP-----RPCPSPP--PPPQPRPRPSPPPP 121

Query: 47  AS*GPCCLTTC 15
           +   P   ++C
Sbjct: 122 SPPPPAPSSSC 132

>emb|CAA78398.1| Pistil extensin like protein, partial CDS only [Nicotiana tabacum]
          Length = 171

 Score = 54.7 bits (130), Expect = 8e-07
 Identities = 36/92 (39%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +1

Query: 277 SWPART*PTAAWSRSWCRCR---RPCTSWPRAAASWRAAT*RARPAPCPSPGWATSAPSP 447
           +WP    P   W     R R   RPC S P             RP PCPSP      P P
Sbjct: 16  TWPFPWPPPPPWPCPPPRPRPRPRPCPSPPPPP----------RPRPCPSP---PPPPRP 62

Query: 448 PPCPAAPPPASWWRPSRACKPPPPRATPPAPS 543
            PCP+ PPP    +P     PPPP   PPAPS
Sbjct: 63  RPCPSPPPPP---QPRPRPSPPPPSPPPPAPS 91

 Score = 35.4 bits (80), Expect = 0.50
 Identities = 28/69 (40%), Positives = 29/69 (41%), Gaps = 8/69 (11%)
 Frame = -3

Query: 492 WPPPACRRWCC---RTRWRRR-C*SRPPRTRTGCWPRPSGRRSPAGCRSWPACT----RP 337
           WPPP    W C   R R R R C S PP  R    P P     P  C S P       RP
Sbjct: 21  WPPPP--PWPCPPPRPRPRPRPCPSPPPPPRPRPCPSPPPPPRPRPCPSPPPPPQPRPRP 78

Query: 336 SAPAPAPAP 310
           S P P+P P
Sbjct: 79  SPPPPSPPP 87

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
 Frame = -1

Query: 230 WPSPSPPGP----HPPRQESGPEPWGHTSARAAAPRPE*HDARRCWG--SPARPPSCPGE 69
           WP P PP P     PPR    P P     +    PRP     R C     P RP  CP  
Sbjct: 17  WPFPWPPPPPWPCPPPRPRPRPRP---CPSPPPPPRP-----RPCPSPPPPPRPRPCPSP 68

Query: 68  RPEQQP 51
            P  QP
Sbjct: 69  PPPPQP 74

 Score = 32.0 bits (71), Expect = 5.5
 Identities = 24/71 (33%), Positives = 27/71 (37%)
 Frame = -1

Query: 227 PSPSPPGPHPPRQESGPEPWGHTSARAAAPRPE*HDARRCWGSPARPPSCPGERPEQQPS 48
           P PSPP P  PR    P P          PRP     R C   P  PP  P  RP   P 
Sbjct: 40  PCPSPPPPPRPRPCPSPPP---------PPRP-----RPCPSPP--PPPQPRPRPSPPPP 83

Query: 47  AS*GPCCLTTC 15
           +   P   ++C
Sbjct: 84  SPPPPAPSSSC 94

>gb|AAC33847.1| nongradient byssal precursor [Mytilus edulis]
          Length = 904

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 59/177 (33%), Positives = 66/177 (36%), Gaps = 17/177 (9%)
 Frame = -1

Query: 545 ALGAGGVALGG------GGLHA----LDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAGR 396
           ALG GG   GG      GGL      L GL    GGG  G GG  G  +   GLG G G 
Sbjct: 113 ALGGGGGGFGGLGGGLGGGLGGVGGGLGGLGGGLGGGGLGGGGLGGGGLGGGGLGGGLGG 172

Query: 395 ALQVAA----LQLAAALGQLVHGLLHRHQLLLQAAVGQVLAGHEVAGHAALLRQ--AGRG 234
            L        L  A A G                  G   AG   AG +A +     G G
Sbjct: 173 LLGGGGGGGGLGSAGAFGN-----------------GNAAAGPGGAGASASVGAFATGGG 215

Query: 233 GWPSPSPPGPHPPRQESGPE-PWGHTSARAAAPRPE*HDARRCWGSPARPPSCPGER 66
           G+P P  PGP  PR  +GP    GH       P P  H  +   GS    P  PGE+
Sbjct: 216 GFPLPGAPGPQGPRGPAGPPGDQGH----GGPPGPPGHSPQGPQGSRG-APGAPGEQ 267

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 30/100 (30%), Positives = 36/100 (36%)
 Frame = -1

Query: 533  GGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAGRALQVAALQLAAALG 354
            GG+   GGG   L GL  L G G  G G   GA       G G   +    A   A++ G
Sbjct: 778  GGLGGLGGGAGGLGGLGGLGGLGFGGAGASAGAGANAGAGGAGGSASAHAHAHAHASSAG 837

Query: 353  QLVHGLLHRHQLLLQAAVGQVLAGHEVAGHAALLRQAGRG 234
             L  G  H H +    +V      H  A  AA       G
Sbjct: 838  GLGGGSAHSHAVAHAHSVSHAGGSHAHAAAAAHAHAVSHG 877

 Score = 37.0 bits (84), Expect = 0.17
 Identities = 36/106 (33%), Positives = 39/106 (35%), Gaps = 6/106 (5%)
 Frame = -1

Query: 539  GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLG----QGAGRALQVAALQ 372
            GAGG   G GG   + G     GGG  G GGG G      GLG     GAG +    A  
Sbjct: 755  GAGGNGGGAGGAGGIGGGFGGLGGGLGGLGGGAGGLGGLGGLGGLGFGGAGASAGAGANA 814

Query: 371  LAAALG--QLVHGLLHRHQLLLQAAVGQVLAGHEVAGHAALLRQAG 240
             A   G     H   H H        G     H VA HA  +  AG
Sbjct: 815  GAGGAGGSASAHAHAHAHASSAGGLGGGSAHSHAVA-HAHSVSHAG 859

 Score = 35.8 bits (81), Expect = 0.38
 Identities = 23/49 (46%), Positives = 24/49 (48%)
 Frame = -1

Query: 539 GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAGRA 393
           GAGG A G GG     G +   GGGA G GG  G      G G GAG A
Sbjct: 718 GAGGGAGGNGGNGGGAGGNGGNGGGAGGAGGNGGGAGGAGGNGGGAGGA 766

 Score = 35.0 bits (79), Expect = 0.65
 Identities = 21/49 (42%), Positives = 23/49 (46%)
 Frame = -1

Query: 539 GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAGRA 393
           G  GV  G GG          AGGGA G+GG  G    + G G GAG A
Sbjct: 705 GPAGVGAGEGGAGG-------AGGGAGGNGGNGGGAGGNGGNGGGAGGA 746

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 22/47 (46%), Positives = 23/47 (48%)
 Frame = -1

Query: 539 GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAG 399
           GAGG    GGG     G+    GGG  G GGG G      GLG GAG
Sbjct: 752 GAGGAGGNGGGAGGAGGI----GGGFGGLGGGLG------GLGGGAG 788

 Score = 33.1 bits (74), Expect = 2.5
 Identities = 20/47 (42%), Positives = 21/47 (44%)
 Frame = -1

Query: 539 GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAG 399
           GAGG    GGG     G     GGGA G GG  G      G+G G G
Sbjct: 732 GAGGNGGNGGGAGGAGG----NGGGAGGAGGNGGGAGGAGGIGGGFG 774

 Score = 32.3 bits (72), Expect = 4.2
 Identities = 20/47 (42%), Positives = 24/47 (50%)
 Frame = -1

Query: 539 GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAG 399
           GAGG    GGG    +G +    GGA G+GGG G    + G   GAG
Sbjct: 722 GAGGNGGNGGGAGG-NGGNGGGAGGAGGNGGGAGGAGGNGGGAGGAG 767

 Score = 32.0 bits (71), Expect = 5.5
 Identities = 25/69 (36%), Positives = 27/69 (38%), Gaps = 7/69 (10%)
 Frame = -1

Query: 539 GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDG-------AEVAHPGLGQGAGRALQVA 381
           G GG   GG G  A    H  A   A G G G G       A  A   LG G G +    
Sbjct: 47  GRGGGHGGGHGGSASAAAHAAAVANALGGGNGGGSASAAARAAAAARALGGGGGASAAAR 106

Query: 380 ALQLAAALG 354
           A   A+ALG
Sbjct: 107 AAAAASALG 115

 Score = 31.6 bits (70), Expect = 7.2
 Identities = 27/73 (36%), Positives = 31/73 (41%), Gaps = 4/73 (5%)
 Frame = -3

Query: 309 GGGRSGSRWP*SRGSRRAAAPGRARRLAFAFSTRSSSSSSGIR----ARALGAYISAGSS 142
           GGGR G       GS  AAA   A   A        S+S+  R    ARALG     G+S
Sbjct: 45  GGGRGGGHGGGHGGSASAAAHAAAVANALGGGNGGGSASAAARAAAAARALGG--GGGAS 102

Query: 141 ATPRIARREAVLG 103
           A  R A   + LG
Sbjct: 103 AAARAAAAASALG 115

 Score = 31.2 bits (69), Expect = 9.5
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -1

Query: 539 GAGGVALGGGGLHALDGLHQLAGGGAAGHGGGDGAEVAHPGLGQGAG 399
           GAGG   G GG    +G +    GG  G+GGG G    + G   GAG
Sbjct: 715 GAGGAGGGAGG----NGGNGGGAGGNGGNGGGAGGAGGNGGGAGGAG 757

 Score = 26.2 bits (56), Expect(2) = 9.8
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 166 PQGSGPDS*RGG*GP-GGEGEGQPPRPAWRS 255
           P   GP   RG  GP G +G G PP P   S
Sbjct: 220 PGAPGPQGPRGPAGPPGDQGHGGPPGPPGHS 250

 Score = 23.5 bits (49), Expect(2) = 9.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 308 PGAGAGAGAEGRVQAGQERQPAGERRPEGRGQH 406
           PG    AGA G+  A  +    G R P G   H
Sbjct: 273 PGQPGNAGAPGQPGAPGQAGAPGARGPSGAAGH 305

>ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens]
          Length = 208

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 53/157 (33%), Positives = 60/157 (37%), Gaps = 23/157 (14%)
 Frame = -3

Query: 531 RRRPWRRRLARS*WPPPACRR---WCCRTRWRRRC*SRPP-------RTRTGCWPRPSGR 382
           R R W RR       P  C R    CCR R   RC   PP       RT T CW     +
Sbjct: 12  RARAWCRRSTCCCPRPRPCARVASTCCRPRAAPRCPPTPPPGPAWPPRTPTCCWGPGGPQ 71

Query: 381 RSPAGCRSWPACT------------RPSAPAPAPAPGGGRSGSRWP*SRGSRRAAAPGRA 238
              AGCR  PACT            RP  P PA A      G+ WP  R S       RA
Sbjct: 72  HRCAGCRHRPACTPTTTTPCTARRSRPGCPTPAGA------GAHWPAGRPS-----SARA 120

Query: 237 RRLAFAFSTRSSSSSSGIR-ARALGAYISAGSSATPR 130
           R  + + S  ++  S+  R AR         SS TPR
Sbjct: 121 RWSSCSSSRATTCPSTCARPARTRDNLTWMMSSLTPR 157

 Score = 35.0 bits (79), Expect = 0.65
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 313 SRSWCRCRRPCTSWPRAAASWRAAT*RARPAPCPSPGWATSAPSPPPCPAAPP--PASWW 486
           +R+WCR  R     PR     R A+   RP   P        P+PPP PA PP  P   W
Sbjct: 13  ARAWCR--RSTCCCPRPRPCARVASTCCRPRAAP-----RCPPTPPPGPAWPPRTPTCCW 65

Query: 487 RP 492
            P
Sbjct: 66  GP 67



EST assemble image


clone accession position
1 HC028c06_r AV634024 1 514
2 HC056c05_r AV636187 6 477
3 MX218e05_r BP090083 8 322
4 HC094d08_r AV639054 8 418
5 CM077h03_r AV391767 14 528
6 HC013b02_r AV632828 14 366
7 CM071b02_r AV391334 16 620
8 CM007h03_r AV386821 20 557




Chlamydomonas reinhardtii
Kazusa DNA Research Institute