KCC000962A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000962A_C01 KCC000962A_c01
GCACGAGGCGGCCTCGCCGGTGCTGCCGCCACAACAGGAAGCCGCAGGCCCCTCTACACG
CCCGCCGCTGGCGCCGCGCCCCTCACCAGCTACGCCCATCACCAGCAGCCCGGTGGCATC
AGCTGAGGCGGGCGATGGTGCTGCATGCGAGGAGGCTGAGGACATGTTCACTGCCGAGGA
GCTTGAGGCGTTCCTAACGATGAAGTACCAGGAGGAGGCGTCAGAGCTGCAACAAGACAT
GCAGCAGCTTGGCTCCATTGTGAACGCCATCGCACCGCTCCCAGCCCAGCCGCCGCAACA
GGCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCCGTACAGCGG
CGCGGCAGGCGTGCAGGTGCAGCAGGACCCGGCCCAGGAGGAGGCTTTCCGGAGGGTTGA
GGTCGAGGGCCTGCGGCGAGCAATCAACGCCGCGCTCACCCAGTCGTTCGGCTGGTTCAA
TTTCGACCAGGACCCGCTGCAGCCCAACTACGGGGCGGCTCCGCTGGCCCGGngcttc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000962A_C01 KCC000962A_c01
         (538 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_857546.1| HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN [...    46  1e-07
ref|NP_218396.1| hypothetical protein Rv3879c [Mycobacterium tub...    46  1e-07
ref|NP_338547.1| hypothetical protein [Mycobacterium tuberculosi...    46  1e-07
ref|NP_572474.2| CG10555-PA [Drosophila melanogaster] gi|7290925...    49  2e-06
ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    53  3e-06

>ref|NP_857546.1| HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN [Mycobacterium bovis
           subsp. bovis AF2122/97] gi|31620651|emb|CAD96095.1|
           HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN
           [Mycobacterium bovis subsp. bovis AF2122/97]
          Length = 744

 Score = 46.2 bits (108), Expect(2) = 1e-07
 Identities = 34/105 (32%), Positives = 45/105 (42%)
 Frame = +1

Query: 187 GVPNDEVPGGGVRAATRHAAAWLHCERHRTAPSPAAATGAAAAAAAAAAAAAAAAVQRRG 366
           GVP     GGG ++   HA      +    + +PAAA+G   A AAAAA  +  AV    
Sbjct: 353 GVPGQHA-GGGTQSGPAHA------DESAASVTPAAASGVPGARAAAAAP-SGTAVGAGA 404

Query: 367 RRAGAAGPGPGGGFPEG*GRGPAASNQRRAHPVVRLVQFRPGPAA 501
           R +       G G     GR P A++ + A P  R    R  P A
Sbjct: 405 RSSVGTAAASGAGSHAATGRAPVATSDKAAAPSTRAASARTAPPA 449

 Score = 31.2 bits (69), Expect(2) = 1e-07
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 11  ASPVLPPQQEAAGPSTRPPLAPRPSPATPITSSPVASAEAG 133
           A+PV P       P+  P  +P P P TP T  P   A  G
Sbjct: 293 ATPVTPAPAPHPQPAPAPAPSPGPQPVTPATPGPSGPATPG 333

>ref|NP_218396.1| hypothetical protein Rv3879c [Mycobacterium tuberculosis H37Rv]
           gi|7477813|pir||E70803 hypothetical protein Rv3879c -
           Mycobacterium tuberculosis  (strain H37RV)
           gi|2960231|emb|CAA17971.1| hypothetical protein Rv3879c
           [Mycobacterium tuberculosis H37Rv]
          Length = 729

 Score = 46.2 bits (108), Expect(2) = 1e-07
 Identities = 34/105 (32%), Positives = 45/105 (42%)
 Frame = +1

Query: 187 GVPNDEVPGGGVRAATRHAAAWLHCERHRTAPSPAAATGAAAAAAAAAAAAAAAAVQRRG 366
           GVP     GGG ++   HA      +    + +PAAA+G   A AAAAA  +  AV    
Sbjct: 338 GVPGQHA-GGGTQSGPAHA------DESAASVTPAAASGVPGARAAAAAP-SGTAVGAGA 389

Query: 367 RRAGAAGPGPGGGFPEG*GRGPAASNQRRAHPVVRLVQFRPGPAA 501
           R +       G G     GR P A++ + A P  R    R  P A
Sbjct: 390 RSSVGTAAASGAGSHAATGRAPVATSDKAAAPSTRAASARTAPPA 434

 Score = 31.2 bits (69), Expect(2) = 1e-07
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 11  ASPVLPPQQEAAGPSTRPPLAPRPSPATPITSSPVASAEAG 133
           A+PV P       P+  P  +P P P TP T  P   A  G
Sbjct: 278 ATPVTPAPAPHPQPAPAPAPSPGPQPVTPATPGPSGPATPG 318

>ref|NP_338547.1| hypothetical protein [Mycobacterium tuberculosis CDC1551]
           gi|13883885|gb|AAK48361.1| hypothetical protein
           [Mycobacterium tuberculosis CDC1551]
          Length = 723

 Score = 46.2 bits (108), Expect(2) = 1e-07
 Identities = 34/105 (32%), Positives = 45/105 (42%)
 Frame = +1

Query: 187 GVPNDEVPGGGVRAATRHAAAWLHCERHRTAPSPAAATGAAAAAAAAAAAAAAAAVQRRG 366
           GVP     GGG ++   HA      +    + +PAAA+G   A AAAAA  +  AV    
Sbjct: 332 GVPGQHA-GGGTQSGPAHA------DESAASVTPAAASGVPGARAAAAAP-SGTAVGAGA 383

Query: 367 RRAGAAGPGPGGGFPEG*GRGPAASNQRRAHPVVRLVQFRPGPAA 501
           R +       G G     GR P A++ + A P  R    R  P A
Sbjct: 384 RSSVGTAAASGAGSHAATGRAPVATSDKAAAPSTRAASARTAPPA 428

 Score = 31.2 bits (69), Expect(2) = 1e-07
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 11  ASPVLPPQQEAAGPSTRPPLAPRPSPATPITSSPVASAEAG 133
           A+PV P       P+  P  +P P P TP T  P   A  G
Sbjct: 272 ATPVTPAPAPHPQPAPAPAPSPGPQPVTPATPGPSGPATPG 312

>ref|NP_572474.2| CG10555-PA [Drosophila melanogaster] gi|7290925|gb|AAF46366.1|
           CG10555-PA [Drosophila melanogaster]
          Length = 926

 Score = 48.5 bits (114), Expect = 5e-05
 Identities = 32/76 (42%), Positives = 39/76 (51%)
 Frame = +1

Query: 304 AAAAAAAAAAAAAAAAVQRRGRRAGAAGPGPGGGFPEG*GRGPAASNQRRAHPVVRLVQF 483
           AAAAAAAAAAAAA AA Q++G +   AGP                  Q++ HPV R  Q 
Sbjct: 317 AAAAAAAAAAAAAVAAGQQQGPQVSQAGP---------------QQQQQQQHPVYRNAQG 361

Query: 484 RPGPAAAQLRGGSAGP 531
           +  P A Q+ G   GP
Sbjct: 362 QGQPGAGQVPGQGQGP 377

 Score = 44.3 bits (103), Expect(2) = 2e-06
 Identities = 41/126 (32%), Positives = 48/126 (37%), Gaps = 13/126 (10%)
 Frame = +2

Query: 8    AASPVLPPQQEA-AGPSTRPPLAPRPSPATPITSSPVASAEAGDGAACEEAEDMFTAEEL 184
            A S   PPQ    AG     P  P    +TP    P   A  G G +             
Sbjct: 685  APSQTPPPQGGGGAGGGNNNPNGPNAQQSTP---PPQGGAGGGAGPSGPGGAGQ------ 735

Query: 185  EAFLTMKYQEEASELQQDMQQLGSIVNAIAPLPAQPP----------QQ--APPPPPQQQ 328
                  +Y     +  Q  Q  G +V+ +APLP Q            QQ  APPPP QQQ
Sbjct: 736  ------QYAGPPQQQPQQQQPPGVVVSGVAPLPTQVQPTYSTPGNYNQQPGAPPPPNQQQ 789

Query: 329  QQQQQQ 346
            QQQQQQ
Sbjct: 790  QQQQQQ 795

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
 Frame = +2

Query: 287 QPPQQAP------------PPPPQQQQQQQQQLPYSGAAGVQVQQDP 391
           QPPQQ P            PPPPQQQQQQQQQL          QQ P
Sbjct: 8   QPPQQQPQQQQQLQQQQQQPPPPQQQQQQQQQLQQPPPNSAPNQQPP 54

 Score = 39.7 bits (91), Expect = 0.025
 Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
 Frame = -3

Query: 431 GPRPQPSGKPPPGPGPAAPARLPRRCTAAAAAAAAAAAAAAAAPVAAAGLG---AVRWRS 261
           GP  Q  G PPPGP  AA            A AA  A+     P A AG G         
Sbjct: 485 GPPTQGYGPPPPGPPNAAQGGYHH----GPAGAATGASGHGYQPNAGAGQGPPPGAYPPP 540

Query: 260 QWSQAAACLVAALTPPPGTSSLG-TPQAPRQ*TCPQPPRMQHHRPP 126
             SQ    +     PPPG    G  P   +Q   P PP+ Q+  PP
Sbjct: 541 PGSQQVPPVPGQQQPPPGPPPPGQPPTGGQQQPPPGPPQSQYGPPP 586

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = +2

Query: 230 QQDMQQLGSIVNAIAPLPAQPPQQAPPPPPQQQQQQQQQLPYSGAAGVQVQQDPAQEEAF 409
           Q  MQQ G         P  PP Q PP   QQQ Q    LP       Q QQ   Q++  
Sbjct: 254 QMGMQQHGGD-------PQGPPVQMPPYGAQQQPQPHPGLPPGAQQQSQQQQQQQQQQQQ 306

Query: 410 RRVEVEGLRRAINAA 454
           ++ + +  ++A  AA
Sbjct: 307 QQQQQQQQQQAAAAA 321

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 31/93 (33%), Positives = 36/93 (38%)
 Frame = -3

Query: 434 AGPRPQPSGKPPPGPGPAAPARLPRRCTAAAAAAAAAAAAAAAAPVAAAGLGAVRWRSQW 255
           AG  P PSG  PP P P + A+ P +         AAA   A AP            S +
Sbjct: 614 AGGGPPPSGYWPP-PPPTSSAQSPYQAYQQQQQQQAAAGGGAGAPPG----------SSY 662

Query: 254 SQAAACLVAALTPPPGTSSLGTPQAPRQ*TCPQ 156
                   AA  PPPG +   T  AP Q   PQ
Sbjct: 663 PGGPPTSGAAPPPPPGGAYSTT--APSQTPPPQ 693

 Score = 31.6 bits (70), Expect = 6.9
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = +2

Query: 287 QPPQQAPPPPPQQQQQQQQQLPYSGAAGVQVQQDPAQEEAFRRVEVEGLRRAINAALTQ 463
           Q PQ  P  PP  QQQ QQQ         Q QQ   Q++A           A+ A   Q
Sbjct: 278 QQPQPHPGLPPGAQQQSQQQQQQQQQQQQQQQQQQQQQQAAAAAAAAAAAAAVAAGQQQ 336

 Score = 28.9 bits (63), Expect(2) = 2e-06
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +1

Query: 355 QRRGRRAGAAGPGPGGGFPEG*GRGPAASNQRRAHPVVRLVQFRPGPAAAQLRGGSAGP 531
           Q++     A G   GGG P   G+G        A P +   Q++P P A Q  G   GP
Sbjct: 798 QQQQTPPSAGGSAGGGGAPNAQGQGNQQPPPNGATPPMPPNQYQPAPGAPQ--GPYGGP 854

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 40/144 (27%), Positives = 58/144 (39%), Gaps = 3/144 (2%)
 Frame = -2

Query: 423 TSTLRKASSWAGSCCTCTPAAPLYGSCCCCCCCCCGGGGGACCGGWAGSGAMAFTMEPSC 244
           TS+ R  +S   SC +CT +     SCC   C  C     +C    + +         S 
Sbjct: 129 TSSCRSGTS---SCSSCTTSC----SCCTSSCSSCASSCSSCASSSSTTSCSCCASSSSS 181

Query: 243 CMSCCSSDASSWYFIVRNASSSSAVNMSSASSHAAPSPASADATGLLVMGVAGEGRGASG 64
           C S CSS ASS      + SS +  + S ASS ++ + +S+  T     G        S 
Sbjct: 182 CASSCSSCASSCSSCASSCSSGTTSSSSCASSCSSSTSSSSSGTTSCSSGTTSSSCCTSS 241

Query: 63  GRVEGPAASCCGGSTGE---AASC 1
                  +S C G+T     A+SC
Sbjct: 242 --CSSSTSSSCSGTTASSSCASSC 263

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 38/142 (26%), Positives = 56/142 (38%), Gaps = 8/142 (5%)
 Frame = -2

Query: 402 SSWAGSCCTCTPAAPLYGSCCCCCCCC-----CGGGGGAC---CGGWAGSGAMAFTMEPS 247
           SS A SC +C  ++    S   C CC      C     +C   C   A S +   T   S
Sbjct: 154 SSCASSCSSCASSS----STTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSS 209

Query: 246 CCMSCCSSDASSWYFIVRNASSSSAVNMSSASSHAAPSPASADATGLLVMGVAGEGRGAS 67
           C  SC SS +SS       +S +++ +  + SS    S  S+  +       +G    +S
Sbjct: 210 CASSCSSSTSSS-------SSGTTSCSSGTTSSSCCTSSCSSSTSS----SCSGTTASSS 258

Query: 66  GGRVEGPAASCCGGSTGEAASC 1
                   AS C  ST  ++SC
Sbjct: 259 CASSCSSCASSCSSSTSSSSSC 280

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 34/140 (24%), Positives = 54/140 (38%)
 Frame = -2

Query: 423 TSTLRKASSWAGSCCTCTPAAPLYGSCCCCCCCCCGGGGGACCGGWAGSGAMAFTMEPSC 244
           +S+    SS   SC +CT +     S C      C  G  +C    + S +         
Sbjct: 28  SSSTSSGSSGTTSCSSCTSSCSSGTSSCSSATSSCSSGTTSCTSSTSSSNS--------- 78

Query: 243 CMSCCSSDASSWYFIVRNASSSSAVNMSSASSHAAPSPASADATGLLVMGVAGEGRGASG 64
           C S CSS  SS      ++SS ++   S  +S ++ + + + +T     G +    G S 
Sbjct: 79  CTSSCSSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSS 138

Query: 63  GRVEGPAASCCGGSTGEAAS 4
                 + SCC  S    AS
Sbjct: 139 CSSCTTSCSCCTSSCSSCAS 158

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 3/144 (2%)
 Frame = -2

Query: 426 STSTLRKASSWAGSCCTCTPAAPLYGSCCCCC---CCCCGGGGGACCGGWAGSGAMAFTM 256
           S+S     SS   SC + T +     S C  C   C CC     +C    +   + + T 
Sbjct: 111 SSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSSCASSSSTT 170

Query: 255 EPSCCMSCCSSDASSWYFIVRNASSSSAVNMSSASSHAAPSPASADATGLLVMGVAGEGR 76
             SC  SCC+S +SS      + +SS +   SS SS    S + A +        +    
Sbjct: 171 --SC--SCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCSSSTSSSSSGTT 226

Query: 75  GASGGRVEGPAASCCGGSTGEAAS 4
             S G     ++SCC  S   + S
Sbjct: 227 SCSSGTT---SSSCCTSSCSSSTS 247

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 5/134 (3%)
 Frame = -2

Query: 501 CSGSWSKLNQPNDWVSAALIARRRPS-----TSTLRKASSWAGSCCTCTPAAPLYGSCCC 337
           C+ S S     +   S +  A    S     +S     SS A SC + T ++    S C 
Sbjct: 156 CASSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCS 215

Query: 336 CCCCCCGGGGGACCGGWAGSGAMAFTMEPSCCMSCCSSDASSWYFIVRNASSSSAVNMSS 157
                   G  +C  G         T   SCC S CSS  SS       ASSS A + SS
Sbjct: 216 SSTSSSSSGTTSCSSG---------TTSSSCCTSSCSSSTSS-SCSGTTASSSCASSCSS 265

Query: 156 ASSHAAPSPASADA 115
            +S  + S +S+ +
Sbjct: 266 CASSCSSSTSSSSS 279

 Score = 41.2 bits (95), Expect = 0.009
 Identities = 32/117 (27%), Positives = 48/117 (40%), Gaps = 6/117 (5%)
 Frame = -2

Query: 336 CCCCCCGGGGGACCGGWAGSGAMAFTMEPSCCMSC------CSSDASSWYFIVRNASSSS 175
           CC   C  G  +C      SG+   T   SC  SC      CSS  SS      + +SS+
Sbjct: 15  CCTTSCSSGTSSCSSS-TSSGSSGTTSCSSCTSSCSSGTSSCSSATSSCSSGTTSCTSST 73

Query: 174 AVNMSSASSHAAPSPASADATGLLVMGVAGEGRGASGGRVEGPAASCCGGSTGEAAS 4
           + + S  SS ++ + + + +T       +G    +SG       AS C  ST   +S
Sbjct: 74  SSSNSCTSSCSSGTSSRSSST---TSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSS 127

 Score = 37.7 bits (86), Expect = 0.096
 Identities = 44/202 (21%), Positives = 67/202 (32%), Gaps = 36/202 (17%)
 Frame = -2

Query: 501 CSGSWSKLNQPNDWVSAALIARRRPSTSTLRKASSWAGSCCTCTPAAPLYGSC------- 343
           CS S S  +      S+   +    ++S     SS +    +CT +     SC       
Sbjct: 27  CSSSTSSGSSGTTSCSSCTSSCSSGTSSCSSATSSCSSGTTSCTSSTSSSNSCTSSCSSG 86

Query: 342 ------------------------CCCCCCCCGGGGGACCGGWAG-----SGAMAFTMEP 250
                                      C   C     +C  G +      S   + T   
Sbjct: 87  TSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSC 146

Query: 249 SCCMSCCSSDASSWYFIVRNASSSSAVNMSSASSHAAPSPASADATGLLVMGVAGEGRGA 70
           SCC S CSS ASS      ++S++S    +S+SS  A S +S  ++          G  +
Sbjct: 147 SCCTSSCSSCASSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTS 206

Query: 69  SGGRVEGPAASCCGGSTGEAAS 4
           S        AS C  ST  ++S
Sbjct: 207 SSS-----CASSCSSSTSSSSS 223

 Score = 35.4 bits (80), Expect = 0.48
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
 Frame = -2

Query: 423 TSTLRKASSWAGSCCTCTPAAPLYGSCCC-------CCCCCCGGGGGACCGGWAGSGAMA 265
           +S    +SS A SC + T ++    + C        CC   C     + C G   S    
Sbjct: 201 SSGTTSSSSCASSCSSSTSSSSSGTTSCSSGTTSSSCCTSSCSSSTSSSCSGTTAS---- 256

Query: 264 FTMEPSCCMSCCSSDASSWYFIVRNASSSSAVNMSSASS 148
                S C S CSS ASS        SSS++ + S ASS
Sbjct: 257 -----SSCASSCSSCASS-------CSSSTSSSSSCASS 283



EST assemble image


clone accession position
1 CM007a06_r AV386804 1 538
2 CM007a08_r AV386813 1 443




Chlamydomonas reinhardtii
Kazusa DNA Research Institute