KCC000941A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000941A_C01 KCC000941A_c01
cacacaaaCACCAACATAGTTGCTTCTAGACTATAAAGACCAGCAAGTGAGAGACGCCCT
ACACCGGAATCCTTAGCGCAGGCACTGGTGCGAGTTTGGAGCACAAATGGTGGCGGACGT
GACTCTTGAAAGCGCTATGAAGCGGCTAAAGCAGCATGTCTACAAGCAACGCGTGCGTGT
GAAGGACTTCATTATGGACTTTGACAAACTAAACTCCGGATATGTGTTCCCAAACCATTT
TTTGAGCGCATTGAGCATGGCTGGCATCGATAAATACCTGTCACCAAAGGAGCTGGAAGT
CATCTGCGAGACATACAAGGTACAACGCGATGCCACGCTGGTTATGGTGGACCACCGGAC
TTTCCTGCATGAGCTGGAGCTCGTCTTTACTGTGCCGCATTTGGAGAAGGACCCGCTGGT
GGAGGTGGCTACCGAACCGGCCGACCTCCTGGACAAGACCCGCTACCTCAAAAGCTCCCG
CGTGCTGCAGCCACCAGAGCGGGCGGTGATATGCCGCCTCAGTGACGTTTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000941A_C01 KCC000941A_c01
         (531 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_650299.1| CG10841-PA [Drosophila melanogaster] gi|1618278...    64  2e-09
ref|XP_312590.1| ENSANGP00000001271 [Anopheles gambiae] gi|21295...    54  1e-06
dbj|BAC03509.1| unnamed protein product [Homo sapiens]                 41  0.011
gb|EAA40374.1| GLP_567_37416_34240 [Giardia lamblia ATCC 50803]        40  0.019
ref|NP_786557.1| ABC transporter substrate binding protein [Lact...    38  0.071

>ref|NP_650299.1| CG10841-PA [Drosophila melanogaster] gi|16182785|gb|AAL13577.1|
           GH12158p [Drosophila melanogaster]
           gi|23171182|gb|AAF54962.2| CG10841-PA [Drosophila
           melanogaster]
          Length = 728

 Score = 63.5 bits (153), Expect = 2e-09
 Identities = 32/90 (35%), Positives = 52/90 (57%)
 Frame = +2

Query: 146 LKQHVYKQRVRVKDFIMDFDKLNSGYVFPNHFLSALSMAGIDKYLSPKELEVICETYKVQ 325
           ++ ++YK +VR  +F+  +D LN G +  N F   LS  G+ KYL+ +E+ ++ E Y   
Sbjct: 280 IQNYIYKNQVRTSEFLECYDSLNVGSITKNQFERGLSNMGVGKYLTQREMSILLERYTDP 339

Query: 326 RDATLVMVDHRTFLHELELVFTVPHLEKDP 415
            D  +  V  R F  E++ VFT+ +LEK P
Sbjct: 340 VD--INRVRWRNFADEIDTVFTIKNLEKMP 367

 Score = 38.1 bits (87), Expect = 0.071
 Identities = 18/72 (25%), Positives = 40/72 (55%)
 Frame = +2

Query: 197 DFDKLNSGYVFPNHFLSALSMAGIDKYLSPKELEVICETYKVQRDATLVMVDHRTFLHEL 376
           DFD+   G +  N FL  +++  +   LS +E + IC+ + V++   +   ++R FL  L
Sbjct: 657 DFDREQCGSITQNQFLRGITVRDMHVMLSSREFQAICKCFGVKKGMCMEF-NYREFLKIL 715

Query: 377 ELVFTVPHLEKD 412
           +++F    ++++
Sbjct: 716 DVLFATGQMKRN 727

 Score = 31.6 bits (70), Expect = 6.7
 Identities = 20/63 (31%), Positives = 30/63 (46%)
 Frame = +2

Query: 128 ESAMKRLKQHVYKQRVRVKDFIMDFDKLNSGYVFPNHFLSALSMAGIDKYLSPKELEVIC 307
           E AM ++K  +  +R+ +  F   +DKLNSG+V  N         GI   LS  E + + 
Sbjct: 401 EDAMAKIKIRIRNRRLYLHPFFRSYDKLNSGHVRCNITKQIFRTNGI--LLSDPEQDSVL 458

Query: 308 ETY 316
             Y
Sbjct: 459 SRY 461

>ref|XP_312590.1| ENSANGP00000001271 [Anopheles gambiae] gi|21295535|gb|EAA07680.1|
           ENSANGP00000001271 [Anopheles gambiae str. PEST]
          Length = 701

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 29/112 (25%), Positives = 56/112 (49%), Gaps = 4/112 (3%)
 Frame = +2

Query: 116 DVTLESAMKRLKQHVYKQRVRVKDFIMDFDKLNSGYVFPNHFLSALSMAGIDKY----LS 283
           D  LE  + R+++H++   +  KDF   +D    G++  + F+  L + G+       L+
Sbjct: 254 DYGLEELLLRIQRHIWNGSIGAKDFFQPYDPQRCGWMAKSTFIRCLDVIGLSPLDRLPLN 313

Query: 284 PKELEVICETYKVQRDATLVMVDHRTFLHELELVFTVPHLEKDPLVEVATEP 439
            +E++ +C+ Y   +D     V    F+ E+E VFT  HL+K    ++ + P
Sbjct: 314 EREIKQLCKRYADPKDP--CKVHWTAFVDEMERVFTEKHLDKGAFKQLESPP 363

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +2

Query: 137 MKRLKQHVYKQRVRVKDFIMDFDKLNSGYVFPNHFLSALSMAGIDKYLSPKELEVICETY 316
           + ++K    ++R+R+ DF+  FD LN   +    F   LS A +   L+P E++++CE +
Sbjct: 503 LAKVKAQTVRRRLRLVDFMEGFDPLNHHRISDEQFCRGLSTASVQ--LTPNEMQLLCELF 560

Query: 317 KVQRDATLVMVDHRTFLHELELVFTVPHLEKDP-LVEVATEPAD 445
              R  T   VD+R F   +  V   P+LE+ P LV  +  PAD
Sbjct: 561 ---RTPTCQTVDYRRFCDTVAEVDYQPYLERAPLLVPCSHFPAD 601

>dbj|BAC03509.1| unnamed protein product [Homo sapiens]
          Length = 201

 Score = 40.8 bits (94), Expect = 0.011
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
 Frame = +3

Query: 279 CHQRSWKSSARHTRYNAMPRWLWWTTG-LSCMSW-------SSSLLCRIWRRTR-----W 419
           C   +W SSA+H        W WW +G L    W        + LL   W  TR     W
Sbjct: 87  CATCNWASSAQH--------WAWWGSGGLRVPPWPPVVSFLGTHLLSGAWCSTRPSAGYW 138

Query: 420 WRWLPNRPTSWTRPATSKAPACC 488
           W WL +  T  +R      P CC
Sbjct: 139 WLWLSSTLTISSRALPPPCPLCC 161

>gb|EAA40374.1| GLP_567_37416_34240 [Giardia lamblia ATCC 50803]
          Length = 1058

 Score = 40.0 bits (92), Expect = 0.019
 Identities = 35/131 (26%), Positives = 58/131 (43%), Gaps = 18/131 (13%)
 Frame = +2

Query: 128 ESAMKRLKQHVYKQRVRVKDFIMDFDKLNSGYVFPNHFLSALSMAGI-----------DK 274
           +  + R+K  +Y +R R+ +F+ DFDKL  G+V  + F  AL   G+            K
Sbjct: 5   QDPLVRIKTIMYTRRPRILEFLQDFDKLRRGFVSVDQFFRALESMGLIFTDSERYYLEQK 64

Query: 275 YLS---PKEL---EVICETYKVQRDATLVMVDHRTFLHELELVFTVPHLEKDPLV-EVAT 433
           Y +   P+E+   +V+ E      D +L           +     VP LE D L  E   
Sbjct: 65  YATATYPREICYQDVVDELETPLLDPSLAPKGSLAGTTAVYSTLVVPDLELDHLTPEEDR 124

Query: 434 EPADLLDKTRY 466
           +  +LL++ R+
Sbjct: 125 QCRELLEQLRH 135

 Score = 35.4 bits (80), Expect = 0.46
 Identities = 29/106 (27%), Positives = 49/106 (45%), Gaps = 4/106 (3%)
 Frame = +2

Query: 176  RVKDFIMDFDKLNSGYVFPNHFLSALSMAGIDKYLS--PKELEVICETYKVQRDAT--LV 343
            R  D   +FDKL +G+V  ++F  A  +A ++K     P   + + E Y     ++  L 
Sbjct: 845  RPLDAFREFDKLRTGFVSKDNFARAFVIANMEKITDAYPLSFKFLMELYTCVDSSSIYLG 904

Query: 344  MVDHRTFLHELELVFTVPHLEKDPLVEVATEPADLLDKTRYLKSSR 481
            MVD+  FL +L        L  D  + ++ E A  L + +Y +  R
Sbjct: 905  MVDYAFFLRDLS-------LPPDSSIFLSPEEAIELKRLKYGEQER 943

 Score = 31.6 bits (70), Expect = 6.7
 Identities = 19/67 (28%), Positives = 37/67 (54%), Gaps = 3/67 (4%)
 Frame = +2

Query: 137 MKRLKQHVYKQRVRVKDFIMDFDKLNSGYVFPNHFLSALS---MAGIDKYLSPKELEVIC 307
           +++L+  V+ + +  K F  DFD   +G V  N F+   S    A I K+ + ++LE++ 
Sbjct: 130 LEQLRHWVHCRPIIGKLFYQDFDLHKTGLVTANQFMRGTSNMWEALIRKFPTKEQLELLA 189

Query: 308 ETYKVQR 328
           + +K +R
Sbjct: 190 KAFKAKR 196

>ref|NP_786557.1| ABC transporter substrate binding protein [Lactobacillus plantarum
           WCFS1] gi|28272505|emb|CAD65429.1| ABC transporter
           substrate binding protein [Lactobacillus plantarum
           WCFS1]
          Length = 302

 Score = 38.1 bits (87), Expect = 0.071
 Identities = 31/94 (32%), Positives = 46/94 (47%), Gaps = 3/94 (3%)
 Frame = +2

Query: 71  P*RRHWCEFGAQMVAD--VTLESAMKRLKQHVYKQRVRVKDFIMDFDKLNSGYVFPN-HF 241
           P  +H+ E  AQ       T+ + +K+LKQH   QRV V + + D+     GY   N HF
Sbjct: 155 PQHKHYFEQQAQKYQTNAKTITTMIKQLKQHANNQRVAVSEPVFDYSLKAIGYRISNTHF 214

Query: 242 LSALSMAGIDKYLSPKELEVICETYKVQRDATLV 343
             A+   G D   SPK+++ + +  K  R A  V
Sbjct: 215 AHAIE-EGSDP--SPKDIQQMQQDIKHHRIAFFV 245



EST assemble image


clone accession position
1 MX053f10_r BP088189 1 422
2 CM062h09_r AV390141 2 609
3 CM004e09_r AV386691 44 381




Chlamydomonas reinhardtii
Kazusa DNA Research Institute