KCC000937A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000937A_C01 KCC000937A_c01
cgtggcacccagcctggacgccagcccgccgccgccgccgcgcgcgtcgccgccgccgcc
gccgccgCCGCCGCCCACGGGCACAAAGGCGAAGCAGCCGCTGCCCAGTCAGCACGACGA
CCTCGGCGTGGCGGTGGTGATGGGGTACGGCACCACCCACCAGATCCGCTACGCCTGGCC
CGCCGGGTTTGCAGGGCCTCAACCCGGCAGTAGCATCGGCATGAATGCTACAGCCCCCCC
GGCGGCAGACCCTTACGACGTGTGGACTCCAGGTGTGATTACCCGCGTGGTGTTGTCGGC
CCCGTGCTCCAACACACACTCCTTCGACATGAACCAGCGACTGGTCGGGCTGGAGATCCT
GTCCAACACGCCCGACCCCAGCACCGGCAGCAGCAGCGGGACGACCGGCAGCAGCAGCGG
CAGTAGCAGCACGGTGGCGGGTGGCGTGCTGACGGTGCGGAGCCCCCCCGACATCAACAT
TGCGCCCCCGGGCATGTACCACATGTTCCTGGTGAATGGGGACGTGTACAGCAGCGCGGT
GTGGGTGCGACTGGCGCGACCGCAATAGTAGTAACGAGTGCTAGCTCGGTGGATAATGGC
GGTGTATGTGGTCCGCCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000937A_C01 KCC000937A_c01
         (620 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_236929.2| similar to zinc finger protein TZF-L [Rattus no...    59  4e-08
gb|AAK00650.1|AF227194_1 zinc finger protein TZF-L [Mus musculus]      56  4e-07
ref|NP_191321.1| expressed protein [Arabidopsis thaliana] gi|748...    55  1e-06
ref|NP_055160.1| zinc finger protein 318; endocrine regulator [H...    52  7e-06
gb|AAD17298.1| endocrine regulator [Homo sapiens]                      52  7e-06

>ref|XP_236929.2| similar to zinc finger protein TZF-L [Rattus norvegicus]
          Length = 1323

 Score = 59.3 bits (142), Expect = 4e-08
 Identities = 33/87 (37%), Positives = 42/87 (47%), Gaps = 3/87 (3%)
 Frame = +2

Query: 26  PPPPPRASPPPPPPPPPTGTKAKQPLPSQHDDLGVAVVMGYGTTHQIRYAWPAGFAGP-- 199
           PPPPP   PPPPPPPP    +   P P+Q +    AV+    +   +   +  GF GP  
Sbjct: 565 PPPPPPPPPPPPPPPPLVVPQLSAPSPAQAN----AVLTPVKSNSVVSQTFSLGFQGPNI 620

Query: 200 -QPGSSIGMNATAPPAADPYDVWTPGV 277
             PG  +   A+  PAA P D   PGV
Sbjct: 621 LNPGLPVAFMASEQPAAIPCDETAPGV 647

>gb|AAK00650.1|AF227194_1 zinc finger protein TZF-L [Mus musculus]
          Length = 2025

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = +2

Query: 14   LDASPPPPPRASPPPPPPPPPTGTKAKQPLPSQHDDLGVAVVMGYGTTHQIRYAWPAGFA 193
            L   PPPPP   PPPPPPPP    +   P P+Q +     V+    +   I   +  GF 
Sbjct: 1257 LPPPPPPPPPPPPPPPPPPPQAVPQLSAPSPAQAN----VVLTPVKSNSVISQTFSLGFQ 1312

Query: 194  GP---QPGSSIGMNATAPPAADPYDVWTPGV 277
            GP    PG  +   A+  P   P D   PGV
Sbjct: 1313 GPNILNPGLPVAFMASEQPTVIPSDETAPGV 1343

>ref|NP_191321.1| expressed protein [Arabidopsis thaliana] gi|7485502|pir||T06758
           probable galactose oxidase (EC 1.1.3.9) F15B8.190
           [similarity] - Arabidopsis thaliana
           gi|4678285|emb|CAB41193.1| putative protein [Arabidopsis
           thaliana]
          Length = 547

 Score = 54.7 bits (130), Expect = 1e-06
 Identities = 34/89 (38%), Positives = 45/89 (50%)
 Frame = +2

Query: 287 VVLSAPCSNTHSFDMNQRLVGLEILSNTPDPSTGSSSGTTGSSSGSSSTVAGGVLTVRSP 466
           V + AP   THSF MNQR+V L++LS T D  T S                   ++   P
Sbjct: 475 VRIVAPSFTTHSFAMNQRMVILKLLSVTRDQLTNSYR-----------------VSALGP 517

Query: 467 PDINIAPPGMYHMFLVNGDVYSSAVWVRL 553
               IAPPG Y +FLV+  + SSA WV++
Sbjct: 518 STAEIAPPGYYMIFLVHAGIPSSAAWVQI 546

>ref|NP_055160.1| zinc finger protein 318; endocrine regulator [Homo sapiens]
            gi|5712209|gb|AAD47387.1|AF090114_1 unknown [Homo
            sapiens]
          Length = 2099

 Score = 52.0 bits (123), Expect = 7e-06
 Identities = 32/87 (36%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
 Frame = +2

Query: 26   PPPPPRASPPPPPPPPPTGTKAKQPLPSQHDDLGVAVVMGYGTTHQIRYAWPAGFAGP-- 199
            PPPPP   PPPPPPPPP       P  +Q +    A++    +   +      GF GP  
Sbjct: 1263 PPPPP---PPPPPPPPPVIPHPAAPSAAQAN----AILAPVKSNPVVSQTLSPGFVGPNI 1315

Query: 200  -QPGSSIGMNATAPPAADPYDVWTPGV 277
              P   + + A+A PAA P D   PGV
Sbjct: 1316 LNPVLPVAIMASAQPAAIPSDETAPGV 1342

>gb|AAD17298.1| endocrine regulator [Homo sapiens]
          Length = 2099

 Score = 52.0 bits (123), Expect = 7e-06
 Identities = 32/87 (36%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
 Frame = +2

Query: 26   PPPPPRASPPPPPPPPPTGTKAKQPLPSQHDDLGVAVVMGYGTTHQIRYAWPAGFAGP-- 199
            PPPPP   PPPPPPPPP       P  +Q +    A++    +   +      GF GP  
Sbjct: 1263 PPPPP---PPPPPPPPPVIPHPAAPSAAQAN----AILAPVKSNPVVSQTLSPGFVGPNI 1315

Query: 200  -QPGSSIGMNATAPPAADPYDVWTPGV 277
              P   + + A+A PAA P D   PGV
Sbjct: 1316 LNPVLPVAIMASAQPAAIPSDETAPGV 1342



EST assemble image


clone accession position
1 CM004c07_r AV386647 1 495
2 CM040d12_r AV389220 68 620




Chlamydomonas reinhardtii
Kazusa DNA Research Institute