KCC000913A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000913A_C01 KCC000913A_c01
CACACGCTGCTGAACTAGGCGAACTCGATCAGTCACAAATGGCGATGTCCACCCTCCGAG
CTGCGTTGGGCCATGCTGCGCGAGTCGCCCACGAGGGCTCGCTGGTGGGCCTGCTTTCCA
GGGGCATGGCGAGTGCTGCCCAGCCGGCTGTCGACCATGCACACCATGAGAAGTCCAGGT
CTGCTCTGTCCTATGCCCAGAAGCTGCCCAACCAGCTGTTCATCGACGGCAAGTGGGTGG
ACGCCCTGTCGCGCAAGACCATGCCGGTGGTGGACCCGCGCACGGAGGAGGTGGTGGTGG
AGGTGGCGGAGGGCGACGCCGCCGACGTGGACCGGGCAGTGGAGGCGGCGCGGCGCGCCT
TCGACACCGGGCCCTGGCCCCGCATGACCGCCAAGGAGCGCGGCCGGCTGCTGTACCGGC
TGGCTGACGCCATGGAGGCGCACGTGGACGAGCTGGCGCAGCTGGAGACACTGGACAACG
GCAAGCCCTTCTTCTACAGTCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000913A_C01 KCC000913A_c01
         (503 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD10505.1| aldehyde dehydrogenase [Polytomella sp. Pringshe...   147  7e-35
dbj|BAB62757.1| mitochondrial aldehyde dehydrogenase ALDH2 [Hord...   133  1e-30
dbj|BAB92017.1| mitochondrial aldehyde dehydrogenase [Secale cer...   132  3e-30
dbj|BAB19052.1| aldehyde dehydrogenase ALDH2b [Oryza sativa (jap...   129  3e-29
gb|AAF73828.1|AF162665_1 aldehyde dehydrogenase [Oryza sativa]        129  3e-29

>emb|CAD10505.1| aldehyde dehydrogenase [Polytomella sp. Pringsheim 198.80]
          Length = 523

 Score =  147 bits (371), Expect = 7e-35
 Identities = 75/125 (60%), Positives = 92/125 (73%)
 Frame = +3

Query: 129 ASAAQPAVDHAHHEKSRSALSYAQKLPNQLFIDGKWVDALSRKTMPVVDPRTEEVVVEVA 308
           AS + P VD A        + +A+ LPN+LFI+ KWVDA S KTM V DPR  E ++ VA
Sbjct: 22  ASTSAPVVDIASE-----TIQFARNLPNKLFINNKWVDAKSGKTMGVEDPRNGEEILRVA 76

Query: 309 EGDAADVDRAVEAARRAFDTGPWPRMTAKERGRLLYRLADAMEAHVDELAQLETLDNGKP 488
           EGD+ADVD AV+AAR+AFD G WPRMT KERGRL+Y+LADA+EA+ +  A+LETLDNGKP
Sbjct: 77  EGDSADVDLAVKAARKAFDEGAWPRMTGKERGRLIYKLADALEANAEAFARLETLDNGKP 136

Query: 489 FFYSR 503
              SR
Sbjct: 137 LNISR 141

>dbj|BAB62757.1| mitochondrial aldehyde dehydrogenase ALDH2 [Hordeum vulgare subsp.
           vulgare]
          Length = 549

 Score =  133 bits (334), Expect = 1e-30
 Identities = 78/147 (53%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
 Frame = +3

Query: 60  AALGHAARVAH--EGSLVGLLSR-GMASAAQPAVDHAHHEKSRSALSYAQKLPNQLFIDG 230
           AA+  A R A    G L GLL R G A+AA+  +  +            Q    QL I+G
Sbjct: 27  AAVPSALRRADGARGLLPGLLQRFGTAAAAEEPISPS-----------VQVGETQLLING 75

Query: 231 KWVDALSRKTMPVVDPRTEEVVVEVAEGDAADVDRAVEAARRAFDTGPWPRMTAKERGRL 410
           K+VDA S KT P +DPRT EV+  V+EGDA DVDRAV AAR+AFD GPWP+MTA ER R+
Sbjct: 76  KFVDAASGKTFPTLDPRTGEVIARVSEGDAEDVDRAVVAARKAFDEGPWPKMTAYERSRI 135

Query: 411 LYRLADAMEAHVDELAQLETLDNGKPF 491
           L R AD +E H DE+A LET DNGKP+
Sbjct: 136 LLRFADLIEKHNDEIAALETWDNGKPY 162

>dbj|BAB92017.1| mitochondrial aldehyde dehydrogenase [Secale cereale]
          Length = 549

 Score =  132 bits (331), Expect = 3e-30
 Identities = 77/147 (52%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
 Frame = +3

Query: 60  AALGHAARVAH--EGSLVGLLSR-GMASAAQPAVDHAHHEKSRSALSYAQKLPNQLFIDG 230
           AA+  A R A    G L GLL R G A+AA+  +  +            Q    QL I+G
Sbjct: 27  AAVPSALRRADGARGLLPGLLQRFGTAAAAEEPISPS-----------VQVSETQLLING 75

Query: 231 KWVDALSRKTMPVVDPRTEEVVVEVAEGDAADVDRAVEAARRAFDTGPWPRMTAKERGRL 410
           K+VDA S KT P +DPRT EV+  V+EGDA DVDRAV AAR+AFD GPWP+MTA ER R+
Sbjct: 76  KFVDAASGKTFPTLDPRTGEVIARVSEGDAEDVDRAVIAARKAFDHGPWPKMTAYERSRI 135

Query: 411 LYRLADAMEAHVDELAQLETLDNGKPF 491
           L R AD +E H D++A LET DNGKP+
Sbjct: 136 LLRFADLIEKHNDDIAALETWDNGKPY 162

>dbj|BAB19052.1| aldehyde dehydrogenase ALDH2b [Oryza sativa (japonica
           cultivar-group)]
          Length = 549

 Score =  129 bits (323), Expect = 3e-29
 Identities = 79/163 (48%), Positives = 97/163 (59%), Gaps = 24/163 (14%)
 Frame = +3

Query: 75  AARVAHEGSLVGLLSRGM----ASAAQPAVDHAHHEK--------------SRSALSYAQ 200
           AA  A  GS   LLSR +    A+AA PAV  A                  S +A++   
Sbjct: 2   AAAAARRGS--SLLSRCLLSRPAAAASPAVPSALRRADGTQGLLPGILQRFSTAAVAEEP 59

Query: 201 KLP------NQLFIDGKWVDALSRKTMPVVDPRTEEVVVEVAEGDAADVDRAVEAARRAF 362
             P       QL IDGK+VD+ S KT P +DPRT E++  VAEGDA D++RAV AAR+AF
Sbjct: 60  ISPPVQVNYTQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAEGDAEDINRAVHAARKAF 119

Query: 363 DTGPWPRMTAKERGRLLYRLADAMEAHVDELAQLETLDNGKPF 491
           D GPWP+MTA ER R+L R AD +E H DE+A LET DNGKP+
Sbjct: 120 DEGPWPKMTAYERSRILLRFADLIEKHNDEIAALETWDNGKPY 162

>gb|AAF73828.1|AF162665_1 aldehyde dehydrogenase [Oryza sativa]
          Length = 549

 Score =  129 bits (323), Expect = 3e-29
 Identities = 79/163 (48%), Positives = 97/163 (59%), Gaps = 24/163 (14%)
 Frame = +3

Query: 75  AARVAHEGSLVGLLSRGM----ASAAQPAVDHAHHEK--------------SRSALSYAQ 200
           AA  A  GS   LLSR +    A+AA PAV  A                  S +A++   
Sbjct: 2   AAAAARRGS--SLLSRCLLSRPAAAASPAVPSALRRADGTQGLLPGILQRFSTAAVAEEP 59

Query: 201 KLP------NQLFIDGKWVDALSRKTMPVVDPRTEEVVVEVAEGDAADVDRAVEAARRAF 362
             P       QL IDGK+VD+ S KT P +DPRT E++  VAEGDA D++RAV AAR+AF
Sbjct: 60  ISPPVQVNYTQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAEGDAEDINRAVHAARKAF 119

Query: 363 DTGPWPRMTAKERGRLLYRLADAMEAHVDELAQLETLDNGKPF 491
           D GPWP+MTA ER R+L R AD +E H DE+A LET DNGKP+
Sbjct: 120 DEGPWPKMTAYERSRILLRFADLIEKHNDEIAALETWDNGKPY 162



EST assemble image


clone accession position
1 CM002g04_r AV397823 1 509
2 MXL060e12_r BP096550 7 398
3 HCL003b05_r AV639689 7 486
4 MXL011e03_r BP093649 9 254
5 HCL096b05_r AV644967 24 332
6 MXL021a12_r BP094314 25 326




Chlamydomonas reinhardtii
Kazusa DNA Research Institute