Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000910A_C01 KCC000910A_c01
(598 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP79155.1| ribosomal protein rpL13 [Bigelowiella natans] 123 2e-30
ref|ZP_00074153.1| COG0102: Ribosomal protein L13 [Trichodesmium... 119 4e-29
ref|NP_177984.1| ribosomal protein L13p family [Arabidopsis thal... 123 2e-27
sp|P12629|RK13_SPIOL 50S RIBOSOMAL PROTEIN L13, CHLOROPLAST PREC... 123 2e-27
ref|NP_876077.1| Ribosomal protein L13 [Prochlorococcus marinus ... 110 3e-27
>gb|AAP79155.1| ribosomal protein rpL13 [Bigelowiella natans]
Length = 273
Score = 123 bits (309), Expect(2) = 2e-30
Identities = 61/105 (58%), Positives = 75/105 (71%)
Frame = +2
Query: 215 LLNKSYYPTSADASNVNKRWYVIDAEGQTLGRLASLAALYIRGKHLPTYTPSMDMGAYVI 394
L KSYYP AD + W V+DA+ Q LGRLASLAA + GK P Y P+M+MGA+V+
Sbjct: 107 LQRKSYYPKLADTKASKETWIVLDAQDQILGRLASLAATLVMGKWHPLYHPAMNMGAHVV 166
Query: 395 VINADKVTVSGKKPAAKTYFRHVTGRPGSWTIESFNELQARLPER 529
+INADKV V+G+K K Y RHVTGRPGS E+F +LQAR+PER
Sbjct: 167 IINADKVRVTGRKYTDKLYKRHVTGRPGSMKSEAFRDLQARIPER 211
Score = 30.8 bits (68), Expect(2) = 2e-30
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +3
Query: 522 PSAIIERAVKGMLPKGALGRD 584
P I+E A+KGMLPK LGR+
Sbjct: 209 PERIVEVAIKGMLPKTRLGRE 229
>ref|ZP_00074153.1| COG0102: Ribosomal protein L13 [Trichodesmium erythraeum IMS101]
Length = 151
Score = 119 bits (297), Expect(2) = 4e-29
Identities = 61/104 (58%), Positives = 76/104 (72%)
Frame = +2
Query: 218 LNKSYYPTSADASNVNKRWYVIDAEGQTLGRLASLAALYIRGKHLPTYTPSMDMGAYVIV 397
+NK+Y P K+WYVIDAEGQ LGRLA+ A+ IRGK+ PTYTP MD G +VIV
Sbjct: 1 MNKTYLPPQ---DIEGKKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIV 57
Query: 398 INADKVTVSGKKPAAKTYFRHVTGRPGSWTIESFNELQARLPER 529
+NA+KVTV+GKK + K Y RH +GRPG E F++LQARLP+R
Sbjct: 58 VNAEKVTVTGKKSSQKLYRRH-SGRPGGMKTEVFSKLQARLPQR 100
Score = 31.2 bits (69), Expect(2) = 4e-29
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 522 PSAIIERAVKGMLPKGALGRDIN 590
P IIE AV GMLPK +LGR ++
Sbjct: 98 PQRIIEEAVFGMLPKNSLGRKLH 120
>ref|NP_177984.1| ribosomal protein L13p family [Arabidopsis thaliana]
gi|25295170|pir||A96815 hypothetical protein T30F21.4
[imported] - Arabidopsis thaliana
gi|4836870|gb|AAD30573.1|AC007260_4 50S Ribosomal
protein L13 [Arabidopsis thaliana]
gi|7572938|emb|CAA60775.1| ribosomal protein L13
[Arabidopsis thaliana]
gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
protein L13 [Arabidopsis thaliana]
gi|17104781|gb|AAL34279.1| putative ribosomal protein
L13 [Arabidopsis thaliana]
Length = 241
Score = 123 bits (309), Expect = 2e-27
Identities = 63/119 (52%), Positives = 85/119 (70%)
Frame = +2
Query: 221 NKSYYPTSADASNVNKRWYVIDAEGQTLGRLASLAALYIRGKHLPTYTPSMDMGAYVIVI 400
N ++YP ++D N +K W+V+DA + LGRLAS A +IRGK+L +YTPS+DMGA+VIV+
Sbjct: 88 NTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVV 147
Query: 401 NADKVTVSGKKPAAKTYFRHVTGRPGSWTIESFNELQARLPERHH*ARREGHAAQGRPG 577
NA+KV VSGKK K Y RH +GRPG T+E+F++LQ R+PER G +GR G
Sbjct: 148 NAEKVAVSGKKRNQKLYRRH-SGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLG 205
Score = 33.5 bits (75), Expect = 2.3
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 522 PSAIIERAVKGMLPKGALGR 581
P I+E AV+GMLPKG LGR
Sbjct: 187 PERIVEHAVRGMLPKGRLGR 206
>sp|P12629|RK13_SPIOL 50S RIBOSOMAL PROTEIN L13, CHLOROPLAST PRECURSOR (CL13)
gi|81483|pir||A32033 ribosomal protein L13 precursor,
chloroplast - spinach gi|170133|gb|AAA34040.1| ribosomal
protein L13
Length = 250
Score = 123 bits (308), Expect = 2e-27
Identities = 64/119 (53%), Positives = 83/119 (68%)
Frame = +2
Query: 221 NKSYYPTSADASNVNKRWYVIDAEGQTLGRLASLAALYIRGKHLPTYTPSMDMGAYVIVI 400
N ++YP SAD +K+WYV+DA LGR+AS A++IRGK+L +YTPS+DMGA+VIV+
Sbjct: 97 NTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVV 156
Query: 401 NADKVTVSGKKPAAKTYFRHVTGRPGSWTIESFNELQARLPERHH*ARREGHAAQGRPG 577
NADKV VSGKK K Y RH +GRPG E+F++LQ R+PER G +GR G
Sbjct: 157 NADKVAVSGKKRTQKLYRRH-SGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLG 214
Score = 34.3 bits (77), Expect = 1.4
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = +3
Query: 510 KRACPSAIIERAVKGMLPKGALGR 581
++ P IIE AV+GMLPKG LGR
Sbjct: 192 QKRIPERIIEHAVRGMLPKGRLGR 215
>ref|NP_876077.1| Ribosomal protein L13 [Prochlorococcus marinus subsp. marinus str.
CCMP1375] gi|33238665|gb|AAQ00730.1| Ribosomal protein
L13 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 150
Score = 110 bits (274), Expect(2) = 3e-27
Identities = 51/104 (49%), Positives = 76/104 (73%)
Frame = +2
Query: 218 LNKSYYPTSADASNVNKRWYVIDAEGQTLGRLASLAALYIRGKHLPTYTPSMDMGAYVIV 397
+NK+ P+ ++N++WY++DAE QTLGRLA+ A +RGK+ P++TP +D G +VI+
Sbjct: 1 MNKTITPS---IDSINRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVII 57
Query: 398 INADKVTVSGKKPAAKTYFRHVTGRPGSWTIESFNELQARLPER 529
+NA+K+ V+GKK K Y RH +GRPG +E+FN LQ R+PER
Sbjct: 58 VNAEKIKVTGKKGMQKLYRRH-SGRPGGMKVETFNSLQERIPER 100
Score = 33.5 bits (75), Expect(2) = 3e-27
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 504 SSKRACPSAIIERAVKGMLPKGALGRDI 587
S + P I+E+A+KGMLP ALGR +
Sbjct: 92 SLQERIPERIVEKAIKGMLPHNALGRQL 119
