KCC000894A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000894A_C01 KCC000894A_c01
caggtgtgcgtgcatgctgtgtagatggtcaacaagcggcagtcgcgtGCTGAGTTCACG
AATGCCCAACGCATGCGTGACGTGCGACACAGCAAGCCCGGATGATGGATGTAGGGCTCA
AGCCGCTGGTAGGTAGACAATATATACTTACACACCAGTAATAGGGAGGGTTGGGAATGT
GGAGTGGCTCAAGCCTCTGAAGTCTGGTGCGGGGTGTGTGTCAGGTGGTTGCTGCGTGCA
GTCCCACCACTGGGTCAGTTGCCTGCAGTCAGTCGCCATGGTCTGCTTGACAGTGGAACC
GGCTGCGCCCGATAGCTGGCAAGGAGTCAGAAGGAGCAGCGTGTGGCTCATATGCGTTGC
GTTGGTGTTGGTTGCTGATTTTGGAAACGCACTATGAGTTGAGGTGGGGCCGTGTGGTAT
ACGAGAGTGTGGTATGCAGTGCGGAAGCTAATTAGTTCGTGCAGGATGCAGTGCGGTTGT
ATGCAGGTTGTATGCGTAGGTCGTGCGCAGGTCATGCCATAGATGCCATAGTACTCGCTG
TATGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000894A_C01 KCC000894A_c01
         (545 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC05058.1| unnamed protein product [Homo sapiens]                 34  1.5
emb|CAC83674.1| mucin 5 [Homo sapiens]                                 33  2.5
ref|XP_286632.1| hypothetical protein XP_286632 [Mus musculus]         33  2.5
ref|XP_146155.2| mucin 5, subtype B, tracheobronchial [Mus muscu...    32  5.5
ref|XP_307867.1| ENSANGP00000018073 [Anopheles gambiae] gi|21291...    32  7.2

>dbj|BAC05058.1| unnamed protein product [Homo sapiens]
          Length = 225

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 486 LHTTALHPARTN*LPHCIPHSRIPHGPTSTHSAFPKSATNTNATHMSHT 340
           +HT   H   T    H   HS  PH PT  ++    S T+T  TH +HT
Sbjct: 1   MHTIHTHTTHTIHTQHITYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHT 49

>emb|CAC83674.1| mucin 5 [Homo sapiens]
          Length = 2448

 Score = 33.1 bits (74), Expect = 2.5
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = -3

Query: 504  TTYAYNLHTTALHPARTN*LP----HCIPHSRIPHGPTSTHSAFPKSATNTNATHMSHTL 337
            TTYA+   TT+   ART   P      +P +    GP +T S  P ++T + AT  + + 
Sbjct: 2268 TTYAHTTSTTSAPTARTTSAPTTSTTSVPTTSTISGPKTTPSPVPTTSTTSAATTSTISA 2327

Query: 336  LLLTPCQLSGAAGSTVKQTMAT 271
               +   + G   S V  T  T
Sbjct: 2328 PTTSTTSVPGTTPSPVLTTSTT 2349

>ref|XP_286632.1| hypothetical protein XP_286632 [Mus musculus]
          Length = 124

 Score = 33.1 bits (74), Expect = 2.5
 Identities = 12/28 (42%), Positives = 20/28 (70%)
 Frame = +2

Query: 263 LQSVAMVCLTVEPAAPDSWQGVRRSSVW 346
           LQSV ++CL++ P A ++W+ + R  VW
Sbjct: 55  LQSVRLICLSLHPEAQENWELLIRDRVW 82

>ref|XP_146155.2| mucin 5, subtype B, tracheobronchial [Mus musculus]
          Length = 4782

 Score = 32.0 bits (71), Expect = 5.5
 Identities = 26/94 (27%), Positives = 37/94 (38%), Gaps = 6/94 (6%)
 Frame = -3

Query: 417  PHGPTSTHSAFPKSATN------TNATHMSHTLLLLTPCQLSGAAGSTVKQTMATDCRQL 256
            PHG T+TH     S T       ++  H   T  L T   +S  AG    QT +T C+  
Sbjct: 2106 PHGGTTTHPVTTASTTRAVTETLSSRPHTKTTSELPTVSSVSSTAGPGT-QTSSTTCQPQ 2164

Query: 255  TQWWDCTQQPPDTHPAPDFRGLSHSTFPTLPITG 154
             QW   T+     +P+    G    T+  +   G
Sbjct: 2165 CQW---TKWIDVDYPSSSINGGDIETYENIRANG 2195

 Score = 31.6 bits (70), Expect = 7.2
 Identities = 26/94 (27%), Positives = 36/94 (37%), Gaps = 6/94 (6%)
 Frame = -3

Query: 417  PHGPTSTHSAFPKSATN------TNATHMSHTLLLLTPCQLSGAAGSTVKQTMATDCRQL 256
            PHG T+TH     S T       ++  H   T  L T    S  AG    QT +T C+  
Sbjct: 1810 PHGGTTTHPVTTASTTRAVTETLSSRPHTKTTSELPTVSSASSTAGPGT-QTFSTTCQPQ 1868

Query: 255  TQWWDCTQQPPDTHPAPDFRGLSHSTFPTLPITG 154
             QW   T+     +P+    G    T+  +   G
Sbjct: 1869 CQW---TKWIDVDYPSSSINGGDIETYENIRANG 1899

>ref|XP_307867.1| ENSANGP00000018073 [Anopheles gambiae] gi|21291506|gb|EAA03651.1|
           ENSANGP00000018073 [Anopheles gambiae str. PEST]
          Length = 820

 Score = 31.6 bits (70), Expect = 7.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 154 CVSIYC-LPTSGLSPTSIIRACCVARHACVGHS*TQHATAAC*PSTQHAR 8
           CV   C LP+   +P  +  ACC  R+ C G +  ++A  A   S  H R
Sbjct: 149 CVKPKCALPSQKCAPVFVDSACCPIRYDCSGKTPIKNAELATTESANHVR 198



EST assemble image


clone accession position
1 CM001f11_r AV386511 1 545
2 HC050a10_r AV635722 49 504




Chlamydomonas reinhardtii
Kazusa DNA Research Institute