Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000878A_C01 KCC000878A_c01
(820 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010073.1| HMG-like nuclear protein; Nhp2p [Saccharomyces ... 162 5e-39
ref|NP_594717.1| Nucleolar protein, possibly involved in ribosom... 147 3e-34
pir||T43644 nhp2 homolog - fission yeast (Schizosaccharomyces po... 145 1e-33
dbj|BAB19331.1| contains EST AU031225(E61165),D15191(C0235)~unkn... 144 2e-33
ref|NP_196435.1| ribosomal protein L7Ae family [Arabidopsis thal... 139 6e-32
>ref|NP_010073.1| HMG-like nuclear protein; Nhp2p [Saccharomyces cerevisiae]
gi|417360|sp|P32495|NHP2_YEAST High mobility group-like
nuclear protein 2 gi|2131280|pir||S67767 high mobility
group-like protein NHP2 - yeast (Saccharomyces
cerevisiae) gi|666101|emb|CAA40885.1| high mobility
group-like nuclear protein 2 [Saccharomyces cerevisiae]
gi|1429348|emb|CAA67483.1| high-mobility-group-like
protein [Saccharomyces cerevisiae]
gi|1431346|emb|CAA98786.1| NHP2 [Saccharomyces
cerevisiae]
Length = 173
Score = 162 bits (411), Expect = 5e-39
Identities = 83/160 (51%), Positives = 113/160 (69%)
Frame = +2
Query: 56 AATMGKSKKSEATAVEASEGGDNYDAKVKFCSVIAKPLADEKLCKKVYKLCKKASKRKQI 235
A MGK K + E S+ DNY+A++ AKPLA +KL KKV K KKASK K +
Sbjct: 15 AVKMGKDNKEHKESKE-SKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNV 73
Query: 236 RRGVKEVVKALRKNAKGICILAGDISPIDVLTHIPIVCEDHKIQYIYVPSKEDLGAAALS 415
+RGVKEVVKALRK KG+ ++AGDISP DV++HIP++CEDH + YI++PSK+DLGAA +
Sbjct: 74 KRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGAT 133
Query: 416 KRPTSCLLVLPKPIKGGDGDEAEAKEFAEAYTEVEKKVKS 535
KRPTS + ++P K DG E +E+ E++ EV K+V++
Sbjct: 134 KRPTSVVFIVPGSNKKKDGKNKE-EEYKESFNEVVKEVQA 172
>ref|NP_594717.1| Nucleolar protein, possibly involved in ribosomal RNA
pseudouridinylation, in association with snRNAs
[Schizosaccharomyces pombe]
gi|26397217|sp|Q9P7H0|NHP2_SCHPO High mobility
group-like nuclear protein 2 (P17-nhp2)
gi|11276717|pir||T50100 Nucleolar protein, possibly
involved in ribosomal RNA pseudouridinylation, in
association with snRNAs [imported] - fission yeast
(Schizosaccharomyces pombe) gi|7160234|emb|CAB76272.1|
nhp2 [Schizosaccharomyces pombe]
Length = 154
Score = 147 bits (370), Expect = 3e-34
Identities = 77/160 (48%), Positives = 109/160 (68%)
Frame = +2
Query: 65 MGKSKKSEATAVEASEGGDNYDAKVKFCSVIAKPLADEKLCKKVYKLCKKASKRKQIRRG 244
M K KK + D YD+ + IAKPLA +KL KK+ K KKASK+K I RG
Sbjct: 1 MAKDKKDHK---HSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRG 57
Query: 245 VKEVVKALRKNAKGICILAGDISPIDVLTHIPIVCEDHKIQYIYVPSKEDLGAAALSKRP 424
VKEVVKA+RK KG+ ILAGDISP+DV++HIP++CED+ + Y+Y SKE LG A+ +KRP
Sbjct: 58 VKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRP 117
Query: 425 TSCLLVLPKPIKGGDGDEAEAKEFAEAYTEVEKKVKSAQI 544
TSC++++P G D ++ +E+ E+Y E+ K+V + ++
Sbjct: 118 TSCVMIVP---GGKKKDMSKVEEYKESYEEIIKEVPALEV 154
>pir||T43644 nhp2 homolog - fission yeast (Schizosaccharomyces pombe)
gi|3955041|emb|CAA08990.1| nhp2+ protein
[Schizosaccharomyces pombe]
Length = 154
Score = 145 bits (365), Expect = 1e-33
Identities = 76/160 (47%), Positives = 108/160 (67%)
Frame = +2
Query: 65 MGKSKKSEATAVEASEGGDNYDAKVKFCSVIAKPLADEKLCKKVYKLCKKASKRKQIRRG 244
M K KK + D YD+ + IAKPLA +KL KK+ K KKASK+K I RG
Sbjct: 1 MAKDKKDHK---HSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRG 57
Query: 245 VKEVVKALRKNAKGICILAGDISPIDVLTHIPIVCEDHKIQYIYVPSKEDLGAAALSKRP 424
VKEVVKA+RK KG+ IL GDISP+DV++HIP++CED+ + Y+Y SKE LG A+ +KRP
Sbjct: 58 VKEVVKAVRKGEKGLVILPGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRP 117
Query: 425 TSCLLVLPKPIKGGDGDEAEAKEFAEAYTEVEKKVKSAQI 544
TSC++++P G D ++ +E+ E+Y E+ K+V + ++
Sbjct: 118 TSCVMIVP---GGKKKDMSKVEEYKESYEEIIKEVPALEV 154
>dbj|BAB19331.1| contains EST AU031225(E61165),D15191(C0235)~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|23589940|dbj|BAC20622.1| contains EST
AU031225(E61165)~nhp2-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 150
Score = 144 bits (363), Expect = 2e-33
Identities = 69/130 (53%), Positives = 97/130 (74%), Gaps = 3/130 (2%)
Frame = +2
Query: 155 IAKPLADEKLCKKVYKLCKKASKRKQIRRGVKEVVKALRKNAKGICILAGDISPIDVLTH 334
IAKPLA +KLCK+ KL ++AS+ K ++RGVKEVVK++R+ KG+CI+AG+ISPIDV+TH
Sbjct: 19 IAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITH 78
Query: 335 IPIVCEDHKIQYIYVPSKEDLGAAALSKRPTSCLLVLPKPIKGGDGDEAEAK---EFAEA 505
+PI+CE+ I Y+YVPSKEDL A +KRPT C+LVL KP KG ++ + K ++ +
Sbjct: 79 VPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELEEDVKEKLKTDYDQV 138
Query: 506 YTEVEKKVKS 535
+EV + S
Sbjct: 139 MSEVAEVTSS 148
>ref|NP_196435.1| ribosomal protein L7Ae family [Arabidopsis thaliana]
gi|11358578|pir||T50503 nhp2-like protein - Arabidopsis
thaliana gi|8346555|emb|CAB93719.1| nhp2-like protein
[Arabidopsis thaliana]
gi|14190415|gb|AAK55688.1|AF378885_1 AT5g08180/T22D6_120
[Arabidopsis thaliana] gi|15215893|gb|AAK91490.1|
AT5g08180/T22D6_120 [Arabidopsis thaliana]
Length = 156
Score = 139 bits (350), Expect = 6e-32
Identities = 66/123 (53%), Positives = 95/123 (76%)
Frame = +2
Query: 155 IAKPLADEKLCKKVYKLCKKASKRKQIRRGVKEVVKALRKNAKGICILAGDISPIDVLTH 334
IAKPLA +KL K+ +KL +KA+ +K ++RGVKEVVK++R+ KG+C++AG+ISPIDV+TH
Sbjct: 25 IAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITH 84
Query: 335 IPIVCEDHKIQYIYVPSKEDLGAAALSKRPTSCLLVLPKPIKGGDGDEAEAKEFAEAYTE 514
+PI+CE+ + Y+YVPSKEDL A +KRPT C+LV+ KP KG + A+E A+ T+
Sbjct: 85 LPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKG----DLTAEELAKLKTD 140
Query: 515 VEK 523
E+
Sbjct: 141 YEQ 143
