Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000877A_C02 KCC000877A_c02
(935 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii] 360 2e-98
gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia ace... 120 1e-40
sp|P27517|CB2_DUNTE Chlorophyll A-B binding protein of LHCII typ... 116 5e-40
gb|AAD03732.2| light harvesting complex II protein precursor [Ch... 113 9e-40
gb|AAL88457.1|AF479778_1 major light-harvesting complex II prote... 109 1e-39
>dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
Length = 289
Score = 360 bits (924), Expect = 2e-98
Identities = 206/300 (68%), Positives = 211/300 (69%), Gaps = 8/300 (2%)
Frame = +3
Query: 39 MQIQALFKKTGASAPAKKGTASTKVVKPSKAGWQGHPRLAGLARAGCCRPGQVVLCPDRK 218
MQIQALFKKTGASAPAKKGTASTKVVKPSKAG G L G PDRK
Sbjct: 1 MQIQALFKKTGASAPAKKGTASTKVVKPSKAG--GKATRGWLGGQGGAADLDKWYGPDRK 58
Query: 219 LFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDP*DRGQVPRERAAARPLVPCLPLPV 398
LFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDP + RE L
Sbjct: 59 LFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKY-RENELLHARWAMLA--- 114
Query: 399 S*SPRACRPTVPTSRVAPGS--RPALRCSTAAP*TTSPCLG------ALCPTPCPCSPSS 554
A +P A G+ + T A L + P P
Sbjct: 115 -----AAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 169
Query: 555 AVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 734
AVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ
Sbjct: 170 AVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 229
Query: 735 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLGAEERTATL 914
ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLGAEERT TL
Sbjct: 230 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLGAEERTPTL 289
Score = 123 bits (309), Expect(2) = 9e-42
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = +2
Query: 377 AMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 553
AMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI
Sbjct: 111 AMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 169
Score = 70.1 bits (170), Expect(2) = 9e-42
Identities = 40/105 (38%), Positives = 49/105 (46%)
Frame = +1
Query: 61 RRPALAPPPRRALPPPRWSSPPRLAGKATRGWLGWPGLAAADLDKWYCAPTASCSCPAAC 240
++ + P ++ + P + GKATRGWLG G AADLDKWY P P+
Sbjct: 8 KKTGASAPAKKGTASTKVVKPSKAGGKATRGWLGGQG-GAADLDKWY-GPDRKLFLPSGL 65
Query: 241 TTARRSPST*MASWLATTAMTLWAWARTPETVAKYRENELLHARW 375
P + PETVAKYRENELLHARW
Sbjct: 66 YDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARW 110
>gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 120 bits (302), Expect(4) = 1e-40
Identities = 62/104 (59%), Positives = 72/104 (68%)
Frame = +3
Query: 561 EVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQEL 740
+V LMG +E YR NG GPAG +GLDPLYPG FDPLGLADDP+ EL
Sbjct: 150 QVILMGLIEGYRVNG-GPAG-------------EGLDPLYPGESFDPLGLADDPDTFAEL 195
Query: 741 KVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYN 872
K+KEIKNGRLAM S+ GF VQ+ VTG+GP NW +H+ADPF N
Sbjct: 196 KIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTAN 239
Score = 42.4 bits (98), Expect(4) = 1e-40
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +3
Query: 207 PDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDP 326
PDR +L G Y +P YL GE GDYG+D GL DP
Sbjct: 36 PDRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADP 73
Score = 33.9 bits (76), Expect(4) = 1e-40
Identities = 13/17 (76%), Positives = 14/17 (81%)
Frame = +1
Query: 325 PETVAKYRENELLHARW 375
PET KYRE EL+HARW
Sbjct: 73 PETFKKYRETELIHARW 89
Score = 33.1 bits (74), Expect(4) = 1e-40
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 377 AMLAAAGILIPEGLQANGANIKG-GTWFETGAEMLNGGTLNYFAVP 511
AML A G + PE L G G WF GA++ G L+Y P
Sbjct: 90 AMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSP 135
>sp|P27517|CB2_DUNTE Chlorophyll A-B binding protein of LHCII type I, chloroplast
precursor (CAB) (LHCP) gi|99364|pir||JW0040 chlorophyll
a/b-binding protein 28.5K precursor - green alga
(Dunaliella tertiolecta) gi|167985|gb|AAA62772.1| 28.5
kDa LHCII apoprotein
Length = 253
Score = 116 bits (291), Expect(4) = 5e-40
Identities = 63/102 (61%), Positives = 69/102 (66%)
Frame = +3
Query: 555 AVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 734
AV+V LMG E YR NG G G+ D LD LYPGGPFDPLGLADDP+
Sbjct: 148 AVQVVLMGLAEAYRANG-GSEGF-----------LDDLDTLYPGGPFDPLGLADDPDTFA 195
Query: 735 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADP 860
ELKVKEIKNGRLAM S LGF VQ+ VTG+GP N T H+ADP
Sbjct: 196 ELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
Score = 45.4 bits (106), Expect(4) = 5e-40
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 207 PDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDP 326
PDR FL G + ++ PEYL GE GDYG+D GL DP
Sbjct: 36 PDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADP 73
Score = 33.9 bits (76), Expect(4) = 5e-40
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 377 AMLAAAGILIPEGL-QANGANIKGGTWFETGAEMLNGGTLNY 499
A+L A GIL PE L Q G WF+ GA++ G LNY
Sbjct: 90 ALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNY 131
Score = 32.3 bits (72), Expect(4) = 5e-40
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = +1
Query: 325 PETVAKYRENELLHARW 375
P+T A+YRE EL+HARW
Sbjct: 73 PQTFARYREIELIHARW 89
>gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 268
Score = 113 bits (282), Expect(4) = 9e-40
Identities = 64/110 (58%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Frame = +3
Query: 555 AVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPF-DPLGLADDPEVL 731
AV+V LMGA+E YR NG GPAG +GLD L+PGG F DPLGLA+DP+
Sbjct: 165 AVQVILMGAIEGYRVNG-GPAG-------------EGLDKLHPGGQFFDPLGLAEDPDAF 210
Query: 732 QELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLT 881
ELKVKEIKNGRLAM S+ GF VQ+ VTG+GP AN +H+A PF N T
Sbjct: 211 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFT 260
Score = 44.7 bits (104), Expect(4) = 9e-40
Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Frame = +3
Query: 24 LNSNTMQIQA-LFKKTGASAPAKKGTASTKVVKPSKAGWQ---GHPRLAGLARAGCCRPG 191
L+ + +QA L KK GA A +A K ++ KAGW G+ +L+
Sbjct: 3 LSRTVVNVQAKLTKKGGAPKKAAPASAQKKTIR-EKAGWWSNGGNEKLSAFYG------- 54
Query: 192 QVVLCPDRKLFLP--SGLYDRSEIPEYLNGELAGDYGYDPLGLGKDP 326
PDR L+L SG P YL GE GDYG+D GL DP
Sbjct: 55 -----PDRGLWLGPLSGT-----TPAYLTGEFPGDYGWDSAGLSADP 91
Score = 38.1 bits (87), Expect(4) = 9e-40
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +2
Query: 377 AMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVP 511
AML A G + PE L NG I WF+ GA++ G L+Y P
Sbjct: 108 AMLGALGCITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNP 152
Score = 31.6 bits (70), Expect(4) = 9e-40
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = +1
Query: 325 PETVAKYRENELLHARW 375
PET +YRE EL+HARW
Sbjct: 91 PETFKRYRELELIHARW 107
>gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
Length = 254
Score = 109 bits (273), Expect(4) = 1e-39
Identities = 60/102 (58%), Positives = 69/102 (66%)
Frame = +3
Query: 555 AVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 734
AV+V L+G VE YR NG GPAG +GLDPLYPG FDPLGLADDP+
Sbjct: 151 AVQVVLLGLVEGYRVNG-GPAG-------------EGLDPLYPGESFDPLGLADDPDTFA 196
Query: 735 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADP 860
ELKVKEIKNGRLAM S GF VQ+ VTG+GP N H+++P
Sbjct: 197 ELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNP 238
Score = 44.7 bits (104), Expect(4) = 1e-39
Identities = 21/45 (46%), Positives = 25/45 (54%)
Frame = +2
Query: 377 AMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVP 511
AML A GI+ PE LQ NG WF+ GA++ G LNY P
Sbjct: 94 AMLGALGIVTPELLQKNGVQFGEAVWFKAGAQIFQEGGLNYLGNP 138
Score = 41.2 bits (95), Expect(4) = 1e-39
Identities = 29/93 (31%), Positives = 35/93 (37%)
Frame = +3
Query: 48 QALFKKTGASAPAKKGTASTKVVKPSKAGWQGHPRLAGLARAGCCRPGQVVLCPDRKLFL 227
+A KKT A A A KG A + P++A W G
Sbjct: 17 KATGKKTAAKAAAPKG-AGIEFYGPNRAKWLGP--------------------------- 48
Query: 228 PSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDP 326
Y + P YL GE GDYG+D GL DP
Sbjct: 49 ----YSENSTPAYLTGEFPGDYGWDTAGLSADP 77
Score = 31.6 bits (70), Expect(4) = 1e-39
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = +1
Query: 325 PETVAKYRENELLHARW 375
PET +YRE EL+HARW
Sbjct: 77 PETFKRYRELELIHARW 93
