Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000865A_C01 KCC000865A_c01
(458 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00007000.1| COG1187: 16S rRNA uridine-516 pseudouridylate... 49 2e-05
pir||EDBEIF immediate-early protein IE180 - suid herpesvirus 1 (... 44 9e-04
ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178... 44 9e-04
gb|AAK49004.1| USC3-5p [Myxococcus xanthus] 43 0.001
ref|ZP_00092881.1| hypothetical protein [Azotobacter vinelandii] 42 0.003
>ref|ZP_00007000.1| COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases [Rhodobacter sphaeroides]
Length = 672
Score = 49.3 bits (116), Expect = 2e-05
Identities = 50/154 (32%), Positives = 61/154 (39%), Gaps = 6/154 (3%)
Frame = -3
Query: 444 PAR*ASGSGR*PP*ARTGSGAAPAAAP---RPSRRPRGRQSRRRCGPAAAACAANRCLIA 274
PAR G P AR+ A PA A RP+R +S R P A A
Sbjct: 415 PARGRKPEGAARP-ARSEGAARPARAEGGARPARAEGAARSERTARPPRGAAAEGPARAG 473
Query: 273 RAACS---CGPQAGRRTRASGGRSGRCRSPQD*GARGRAPAALPAPPRG*GKATPSASRP 103
R A S GP GR + R+G + +G A AA PA RG G SRP
Sbjct: 474 RGAGSEGAAGPAKGRSPHGAARRAGAPKDSARSAGKGAAEAARPA--RGAGAGPARTSRP 531
Query: 102 LASHGRCRARLFRTSLSPALAERAGYPQLCCARR 1
++ G R R PA A R+G + A R
Sbjct: 532 GSAEGTARTR--PADGKPAAAGRSGKTEAADAPR 563
>pir||EDBEIF immediate-early protein IE180 - suid herpesvirus 1 (strain
Indiana-Funkhauser)
Length = 1460
Score = 43.9 bits (102), Expect = 9e-04
Identities = 48/158 (30%), Positives = 58/158 (36%), Gaps = 24/158 (15%)
Frame = -3
Query: 417 R*PP*ARTGSGAAPAAAPRPSRRPRGRQSRRRCGPAAAACAANRCLIAR------AACSC 256
R P + SG P AP P RRPR R+R GP AA A R
Sbjct: 127 RAPSTVTSSSGPGPGPAPGPGRRPRQHSQRQRPGPPAAPGARPPPQPPRPPPPPAPPAPP 186
Query: 255 GPQAGRRTRASGGRSGRCRSPQD*GARGRAP-----------------AALPAPPRG*GK 127
P A RR R G G RS RG P LP PP G+
Sbjct: 187 APPAPRRPRGDGPPRGGTRSVSPGRRRGLGPRRHQHSQQRWPQRRHGGGPLPQPPPPPGR 246
Query: 126 A-TPSASRPLASHGRCRARLFRTSLSPALAERAGYPQL 16
+ P+A+ P + G + T+ SP L E A +L
Sbjct: 247 SRRPAAAAPPPAEGTAVVTITSTA-SPWLDEPAAARRL 283
>ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178092|gb|EAA06612.2|
ENSANGP00000004749 [Anopheles gambiae str. PEST]
Length = 633
Score = 43.9 bits (102), Expect = 9e-04
Identities = 50/138 (36%), Positives = 56/138 (40%), Gaps = 12/138 (8%)
Frame = -3
Query: 384 AAPAAAPR-PSRRPRGRQSRRRCGP-----AAAACAANRCLIARAACSCGPQ---AGRRT 232
AA A+ P P R P S + GP AAAA AA + R A C P A T
Sbjct: 472 AARASPPALPFRAPARPPSAQAAGPGVVAAAAAAAAAPAAVAVRPASPCTPSPCAAACPT 531
Query: 231 RASGGRSGRC--RSPQD*GARGRAPAALPAPPRG*GKATPSASRPLASHGRCR-ARLFRT 61
S R C RSP PAA PA P P+A A GR R A R+
Sbjct: 532 SPSAARPSGCPGRSPP-----SAPPAARPAGP-------PAACTARAPPGRSRSAPPSRS 579
Query: 60 SLSPALAERAGYPQLCCA 7
S PA+A G P C A
Sbjct: 580 SAGPAVASGCGSPPDCSA 597
>gb|AAK49004.1| USC3-5p [Myxococcus xanthus]
Length = 575
Score = 43.1 bits (100), Expect = 0.001
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = -3
Query: 396 TGSGAAPAAAPRPSRRPRGRQSRRRCGPAAAACAANRCLIARAACSCGPQAGRRT-RASG 220
T +G+APA A RP+R R +R AA + C AR SC P AGR +
Sbjct: 157 TVAGSAPAPA-RPARAVLPRAPLQRT--AAPRAGPSGCPAARCPGSCPPGAGRSSWPMQY 213
Query: 219 GRSGRCRSPQD*GARGRAPAALPAPPRG*GKATPSASRPLASHGRCRARLFRTSLSP 49
R+ R R P P LPAPP + SA R H +C AR +R+ +P
Sbjct: 214 RRARRVRRPS-------PPCRLPAPPGPCQRRAASAVR-WHRHAQCPARRWRSRTAP 262
>ref|ZP_00092881.1| hypothetical protein [Azotobacter vinelandii]
Length = 243
Score = 42.0 bits (97), Expect = 0.003
Identities = 35/90 (38%), Positives = 38/90 (41%), Gaps = 1/90 (1%)
Frame = -3
Query: 402 ARTGSGAAPAAAPRPSRRPRG-RQSRRRCGPAAAACAANRCLIARAACSCGPQAGRRTRA 226
A +GA AA P RRPR R+ RR P A AA R
Sbjct: 21 AGRAAGARRLAAGVPRRRPRNPRRRARRADPRGPARAAGR-------------------- 60
Query: 225 SGGRSGRCRSPQD*GARGRAPAALPAPPRG 136
+GGRSGR R P R R AA PAPP G
Sbjct: 61 TGGRSGRARRPV---RRPRPRAATPAPPAG 87
Score = 30.4 bits (67), Expect = 9.8
Identities = 28/82 (34%), Positives = 32/82 (38%), Gaps = 14/82 (17%)
Frame = +2
Query: 44 RAGERDVRNSRARHLPWLASGREAD------GVAFPQPRGGAGSAAGALPRAP*SC---- 193
RAG R VR R + A+GR A GV +PR A A PR P
Sbjct: 2 RAGPRPVRRRERRAVDRHAAGRAAGARRLAAGVPRRRPRNPRRRARRADPRGPARAAGRT 61
Query: 194 ----GDLHRPLRPPDARVLRPA 247
G RP+R P R PA
Sbjct: 62 GGRSGRARRPVRRPRPRAATPA 83
