KCC000854A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000854A_C01 KCC000854A_c01
cgtgtcatacattttAATTAGGTAGCTTCCAGTATGCAACTTTAGCCCTGTGTCACTGGC
GAATCGTCGAGAATGCGCAACTCGTCGACCTTACTGCGTTCGGCATTCGCCCGCCGGGGC
ACGCACTTACAACAGCAGAGTGCGCTGTGGGAGTTGCATCGCGCCCGATACTCGACGAAC
GACGATAGTAATCGCGAGGAGGGGGGCCTGCTCAACAAGATCTGGCGGGCCGGGCTCGGC
CAGAAGCCGAAGGACAGCAGCAGTAGCAGCAGCAGCGCTGCCGGAGGCAGCAGCAGTAGC
AGCAGTAGCTCTCGCAGCAGCGGCGCCAGCAGCGGCGATGCGCTGGTGCCCAGTGGCCCG
GAGCGGCGGCACCACAAGGTGTTTGTGGTGGAGCTGTCTCGCAAGCCGCTGTTCCCGGGC
ATTTACACGCCAGTCATCATTAGTAAGAACGAGGCGCTGGTGAAGGAGATCATGGACGTC
AAGAAGCAGGGCGCCCACGCCTACGTGGGTGCGTTCCTCAAGCGGACGGAGCCGCCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000854A_C01 KCC000854A_c01
         (539 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAA53625.1| LON gene of S. cerevisiae is downstream of the HA...    56  3e-07
ref|NP_009531.1| mitochondrial ATP-dependent protease; Pim1p [Sa...    56  3e-07
gb|AAA53539.1| UAS2 regualtory protein B                               52  7e-06
gb|AAK73158.1| lon proteinase [Paracoccidioides brasiliensis]          51  1e-05
gb|AAO34661.1| putative Lon2 protease [Oryza sativa (indica cult...    49  4e-05

>gb|AAA53625.1| LON gene of S. cerevisiae is downstream of the HAP 3 gene; Putative
           ATP-binding motif bp 1960 to bp 1986.; Putative
           catalytic site serine of serine proteases from bp 3109
           to bp 3111
          Length = 1133

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
 Frame = +1

Query: 178 NDDSNREEGGLLNKIWRAGLGQKPKDSSSSSSSAAGGSSSSSSSSRSSGASSGDALVPSG 357
           ND     +  ++NK       Q+ + S +S SSA+GG  SSSS S S   SS        
Sbjct: 122 NDVEPTRDDEIVNK------DQEGEASKNSRSSASGGGQSSSSRSDSGDGSSKQKPPKDV 175

Query: 358 PERRHHKVFVVELSRKPLFPGIYTPVIISKNEAL--VKEIMDVKKQGAHAYVGAF-LKRT 528
           PE  + ++  + ++R+PLFPG Y  V+IS    +  +KE++D ++     Y+GAF LK +
Sbjct: 176 PEV-YPQMLALPIARRPLFPGFYKAVVISDERVMKAIKEMLDRQQ----PYIGAFMLKNS 230

Query: 529 E 531
           E
Sbjct: 231 E 231

>ref|NP_009531.1| mitochondrial ATP-dependent protease; Pim1p [Saccharomyces
           cerevisiae] gi|585414|sp|P36775|LONM_YEAST Lon protease
           homolog, mitochondrial precursor gi|626863|pir||S43938
           endopeptidase La-like enzyme (EC 3.4.21.-) PIM1
           precursor, mitochondrial - yeast (Saccharomyces
           cerevisiae) gi|453236|emb|CAA52634.1| mitochondrial
           ATP-dependent protease [Saccharomyces cerevisiae]
           gi|536019|emb|CAA84841.1| PIM1 [Saccharomyces
           cerevisiae]
          Length = 1133

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
 Frame = +1

Query: 178 NDDSNREEGGLLNKIWRAGLGQKPKDSSSSSSSAAGGSSSSSSSSRSSGASSGDALVPSG 357
           ND     +  ++NK       Q+ + S +S SSA+GG  SSSS S S   SS        
Sbjct: 122 NDVEPTRDDEIVNK------DQEGEASKNSRSSASGGGQSSSSRSDSGDGSSKQKPPKDV 175

Query: 358 PERRHHKVFVVELSRKPLFPGIYTPVIISKNEAL--VKEIMDVKKQGAHAYVGAF-LKRT 528
           PE  + ++  + ++R+PLFPG Y  V+IS    +  +KE++D ++     Y+GAF LK +
Sbjct: 176 PEV-YPQMLALPIARRPLFPGFYKAVVISDERVMKAIKEMLDRQQ----PYIGAFMLKNS 230

Query: 529 E 531
           E
Sbjct: 231 E 231

>gb|AAA53539.1| UAS2 regualtory protein B
          Length = 217

 Score = 51.6 bits (122), Expect = 7e-06
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
 Frame = +1

Query: 178 NDDSNREEGGLLNKIWRAGLGQKPKDSSSSSSSAAGGSSSSSSSSRSSGASSGDALVPSG 357
           ND     +  ++NK       Q+ + S +S SSA+GG  SSSS S S   SS        
Sbjct: 122 NDVEPTRDDEIVNK------DQEGEASKNSRSSASGGGQSSSSRSDSGDGSSKQKPPKDV 175

Query: 358 PERRHHKVFVVELSRKPLFPGIYTPVIISKNEAL--VKEIMD 477
           PE  + ++  + ++R+PLFPG Y  V+IS    +  +KE++D
Sbjct: 176 PEV-YPQMLALPIARRPLFPGFYKAVVISDERVMKAIKEMLD 216

>gb|AAK73158.1| lon proteinase [Paracoccidioides brasiliensis]
          Length = 1063

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 32/97 (32%), Positives = 54/97 (54%), Gaps = 2/97 (2%)
 Frame = +1

Query: 247 PKDSSSSSSSAAGGSSSSSSSSRSSG--ASSGDALVPSGPERRHHKVFVVELSRKPLFPG 420
           P D   SS+SA+GG++S S      G   S+  AL  +     + +V  + ++R+PLFPG
Sbjct: 112 PADPKPSSASASGGAASGSGDGGKRGRKTSAEKALQKATIPDIYPQVMAIPIARRPLFPG 171

Query: 421 IYTPVIISKNEALVKEIMDVKKQGAHAYVGAFLKRTE 531
            Y+  +  ++  ++  I ++ K+G   YVGAFL + E
Sbjct: 172 -YSKAVTVRDPNVIAAIQEMMKRG-QPYVGAFLFKDE 206

>gb|AAO34661.1| putative Lon2 protease [Oryza sativa (indica cultivar-group)]
          Length = 948

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 32/93 (34%), Positives = 49/93 (52%)
 Frame = +1

Query: 253 DSSSSSSSAAGGSSSSSSSSRSSGASSGDALVPSGPERRHHKVFVVELSRKPLFPGIYTP 432
           DS S +SSAAG     S  +RSS A +   + P       H V  + L  +PLFPG +  
Sbjct: 76  DSDSEASSAAGAGEEESEGNRSSSAVAPAIIRPED----CHTVIALPLPHQPLFPGFFMA 131

Query: 433 VIISKNEALVKEIMDVKKQGAHAYVGAFLKRTE 531
           + + K+  L+K +++  K+ +  Y GAFL + E
Sbjct: 132 MSV-KDPKLLKALVENHKR-SFPYAGAFLVKNE 162



EST assemble image


clone accession position
1 MXL055h07_r BP096280 1 488
2 CL77f08_r AV397248 16 539
3 LCL024b08_r AV627272 16 322
4 LCL072f01_r AV630077 26 443




Chlamydomonas reinhardtii
Kazusa DNA Research Institute