KCC000830A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000830A_C01 KCC000830A_c01
ctgggtccgcgaacgcgctgggtcttttgttgtttgggccgtgccatgcaagcctgcaac
gccgtcagcaacatgattgaGATCCTGGTCTGCATGGTTGACGGGCCCCAGCCCTTCGAG
GACAGGCGGAAGAGGTGGCCGTAGGTAGGGCTGTGGGGCACATCGCAGAGAAGGCTGCTT
GGGCTGGGGCTTTCTTCTGGGGAGGGTGTGGTGTCGTGGCGTTGTGTTGAGCGTATATAC
AGGCAGCCTAGGCATTTCGCACAAGTGTTCGATGGCGTCACGTAACTTGTGCAGCGCTAT
AGGGCGTTCGGCTGGGCGCTAGGACTACCGGCATACTGGTAGTTTGGGTCTGTTTGCGGC
AAGCGGTAGGACTGTTGGTTGTGTCGGTTGGATAGCGGAGGAGGTCTGCAGTCCGCTGGC
CCGCTCAACTAGGCCTTTGGCGTTGAATGGTCTGTCCTTTGCTTTGATAGCTCAGGCAGT
CATGCCACAAGGCACTGCAGGGCACGAGAAACGCGAAGTGGGACGCAACCccgaattgtg
tactcaagcccgctggtttgattggatgctgccacggtacaagccatgcaatgtaagatg
catctggcct


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000830A_C01 KCC000830A_c01
         (610 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_325798.1| hypothetical protein [Neurospora crassa] gi|289...    33  0.037
pir||S13383 hydroxyproline-rich glycoprotein - sorghum gi|228939...    39  0.058
sp|P24152|EXTN_SORBI EXTENSIN PRECURSOR (PROLINE-RICH GLYCOPROTE...    39  0.058
gb|AAC44888.1| unknown [Nannocystis exedens]                           38  0.13
ref|XP_328935.1| predicted protein [Neurospora crassa] gi|289207...    38  0.13

>ref|XP_325798.1| hypothetical protein [Neurospora crassa] gi|28920172|gb|EAA29551.1|
            hypothetical protein [Neurospora crassa]
          Length = 1050

 Score = 33.5 bits (75), Expect(2) = 0.037
 Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 12/82 (14%)
 Frame = -2

Query: 315  PAERPIALHKLRDAIEHLCEMPRLPVYTLNTTPR-HHTLPRRKPQPKQ-----------P 172
            PA++P A +  + A  H    P+ P +  +  P+  H  P  + QP+Q           P
Sbjct: 948  PAQQPQAAYPPQPASHH----PQPPQHQQHQPPQPQHAQPHPQAQPQQAHPQHHQQYFTP 1003

Query: 171  SLRCAPQPYLRPPLPPVLEGLG 106
             +R  P P   PP+PPV  G G
Sbjct: 1004 PVRTTPIP--PPPIPPVTSGSG 1023

 Score = 25.0 bits (53), Expect(2) = 0.037
 Identities = 14/47 (29%), Positives = 20/47 (41%)
 Frame = -3

Query: 449  HSTPKA*LSGPADCRPPPLSNRHNQQSYRLPQTDPNYQYAGSPSAQP 309
            H  P+      A  +P P   +H+QQ  +  Q  P +Q    P  QP
Sbjct: 897  HHQPQHQSQQQAHHQPHPPPPQHHQQPQQQQQHPPKHQAQHPPQHQP 943

>pir||S13383 hydroxyproline-rich glycoprotein - sorghum gi|228939|prf||1814452D
           Hyp-rich glycoprotein
          Length = 283

 Score = 38.9 bits (89), Expect = 0.058
 Identities = 29/88 (32%), Positives = 32/88 (35%)
 Frame = -2

Query: 387 PTQPTVLPLAANRPKLPVCR*S*RPAERPIALHKLRDAIEHLCEMPRLPVYTLNTTPRHH 208
           PT PT  P A   P  PV   S +P        K           P  PVYT N  P   
Sbjct: 129 PTYPTPKPPATKPPTPPVYTPSPKPPVTKPPTPK-----------PTPPVYTPNPKPPVT 177

Query: 207 TLPRRKPQPKQPSLRCAPQPYLRPPLPP 124
             P   P PK P+ +  P  Y   P PP
Sbjct: 178 KPPTHTPSPKPPTSKPTPPVYTPSPKPP 205

>sp|P24152|EXTN_SORBI EXTENSIN PRECURSOR (PROLINE-RICH GLYCOPROTEIN)
           gi|21627|emb|CAA39485.1| hydroxyproline-rich
           glycoprotein [Sorghum bicolor]
          Length = 283

 Score = 38.9 bits (89), Expect = 0.058
 Identities = 29/88 (32%), Positives = 32/88 (35%)
 Frame = -2

Query: 387 PTQPTVLPLAANRPKLPVCR*S*RPAERPIALHKLRDAIEHLCEMPRLPVYTLNTTPRHH 208
           PT PT  P A   P  PV   S +P        K           P  PVYT N  P   
Sbjct: 129 PTYPTPKPPATKPPTPPVYTPSPKPPVTKPPTPK-----------PTPPVYTPNPKPPVT 177

Query: 207 TLPRRKPQPKQPSLRCAPQPYLRPPLPP 124
             P   P PK P+ +  P  Y   P PP
Sbjct: 178 KPPTHTPSPKPPTSKPTPPVYTPSPKPP 205

>gb|AAC44888.1| unknown [Nannocystis exedens]
          Length = 290

 Score = 37.7 bits (86), Expect = 0.13
 Identities = 28/86 (32%), Positives = 41/86 (47%)
 Frame = -1

Query: 271 RTLVRNA*AACIYAQHNATTPHPPQKKAPAQAAFSAMCPTALPTATSSACPRRAGARQPC 92
           R L  NA AA    +  +T+P    +++   +A    C    PT ++++ P    +R PC
Sbjct: 11  RGLRENAPAAPYAWRSPSTSPSSASRRSSPSSAVRWPCSRTPPTWSATSPP----SRSPC 66

Query: 91  RPGSQSCC*RRCRLAWHGPNNKRPSA 14
            P S  C  R CR+A  G    RPSA
Sbjct: 67  SPPSSRCV-RPCRVAPTGSPAPRPSA 91

>ref|XP_328935.1| predicted protein [Neurospora crassa] gi|28920723|gb|EAA30083.1|
           predicted protein [Neurospora crassa]
          Length = 454

 Score = 37.7 bits (86), Expect = 0.13
 Identities = 25/76 (32%), Positives = 35/76 (45%), Gaps = 3/76 (3%)
 Frame = -3

Query: 401 PPLSNRHNQQSYRLPQTDPNYQYAGSPSAQPNAL*RCTSYVTPSNTCAKCLGCLYIRSTQ 222
           P  S +HN          PNY+Y+ SP+   +   +   Y  PS    + LG  +   T+
Sbjct: 134 PARSTKHNDDY-------PNYKYSSSPADSKH---KSDVYTRPSVVLTQTLGVPHEDKTR 183

Query: 221 R---HDTTPSPEESPS 183
           R   HD  PSP+ SPS
Sbjct: 184 RRSPHDREPSPKRSPS 199



EST assemble image


clone accession position
1 CL72h07_r AV397029 1 490
2 LCL059a03_r AV629451 185 610




Chlamydomonas reinhardtii
Kazusa DNA Research Institute