Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000818A_C01 KCC000818A_c01
(814 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM88388.1|AF525690_1 cytochrome c oxidase subunit [Chlamydom... 215 6e-55
ref|ZP_00058502.1| hypothetical protein [Thermobifida fusca] 30 0.078
gb|AAH12403.1| BC026401 protein [Mus musculus] 39 0.13
ref|NP_666313.1| cDNA sequence BC026401 [Mus musculus] gi|200713... 39 0.13
ref|XP_219345.2| similar to hypothetical protein FLJ31751 [Rattu... 39 0.13
>gb|AAM88388.1|AF525690_1 cytochrome c oxidase subunit [Chlamydomonas reinhardtii]
Length = 105
Score = 215 bits (548), Expect = 6e-55
Identities = 104/105 (99%), Positives = 104/105 (99%)
Frame = -1
Query: 748 MASAQIERWAAEHPTAPRVGRIFEVPLGYVVPRVAAGIAAAGCLWYMNNTFLQTYRPESL 569
MA AQIERWAAEHPTAPRVGRIFEVPLGYVVPRVAAGIAAAGCLWYMNNTFLQTYRPESL
Sbjct: 1 MARAQIERWAAEHPTAPRVGRIFEVPLGYVVPRVAAGIAAAGCLWYMNNTFLQTYRPESL 60
Query: 568 SKEFLEEQAKIGEVAQRMNAPPVYLNPFTNRIPGSILGPEDAKPE 434
SKEFLEEQAKIGEVAQRMNAPPVYLNPFTNRIPGSILGPEDAKPE
Sbjct: 61 SKEFLEEQAKIGEVAQRMNAPPVYLNPFTNRIPGSILGPEDAKPE 105
>ref|ZP_00058502.1| hypothetical protein [Thermobifida fusca]
Length = 1903
Score = 30.4 bits (67), Expect(2) = 0.078
Identities = 35/118 (29%), Positives = 45/118 (37%), Gaps = 7/118 (5%)
Frame = +1
Query: 361 RFRVGPPAAPRLSRLAKRMRALQFTRALRPQGPGCYRGCGS*RGSGRPAGRSYVARPRQS 540
RFRV PP R +R+A+ RA R P R + RP PR
Sbjct: 269 RFRVLPPRHARQTRVARP----HHHRAQRRPRP---RAAPAHPAPHRPR------LPRDR 315
Query: 541 LPAPPETP*TEIPGGKSGGRC-------CSCTRGTQRQRCRQRHGGQHSPAEPQKCGP 693
LP PP P T P + G R RGT+ + ++ G H P P + P
Sbjct: 316 LPRPPRRPETRHPRRRRGRRTPVPLPRPARPHRGTRPR--KRAAAGTHRPPRPPRRRP 371
Score = 27.7 bits (60), Expect(2) = 0.078
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Frame = +2
Query: 230 PVQVTTSIHAQHKRSVK----PSFPRRAPDASRPA----KLLATRARCARHHDSELGRQP 385
PV +H +H + P PR A RP +LL AR AR +LGRQP
Sbjct: 200 PVPRGLRLHERHPLLLPNRPAPPHPRHQHRAPRPRPAVQRLLQPAARPARPVHRKLGRQP 259
Query: 386 R 388
R
Sbjct: 260 R 260
>gb|AAH12403.1| BC026401 protein [Mus musculus]
Length = 563
Score = 38.5 bits (88), Expect = 0.13
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 526 RPRQSLPAPPETP*TEIPGGKSGGRCCSCTRGTQRQRCRQRHGGQHSPAEPQKCGPRGGQ 705
R R P PP+ P + IP G+ C C + ++ +H H+ +P KCG G
Sbjct: 112 RVRPPAPGPPKMPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKG 171
Query: 706 WG 711
+G
Sbjct: 172 FG 173
>ref|NP_666313.1| cDNA sequence BC026401 [Mus musculus] gi|20071369|gb|AAH26401.1|
CDNA sequence BC026401 [Mus musculus]
gi|26339894|dbj|BAC33610.1| unnamed protein product [Mus
musculus]
Length = 591
Score = 38.5 bits (88), Expect = 0.13
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 526 RPRQSLPAPPETP*TEIPGGKSGGRCCSCTRGTQRQRCRQRHGGQHSPAEPQKCGPRGGQ 705
R R P PP+ P + IP G+ C C + ++ +H H+ +P KCG G
Sbjct: 140 RVRPPAPGPPKMPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKG 199
Query: 706 WG 711
+G
Sbjct: 200 FG 201
>ref|XP_219345.2| similar to hypothetical protein FLJ31751 [Rattus norvegicus]
Length = 556
Score = 38.5 bits (88), Expect = 0.13
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 526 RPRQSLPAPPETP*TEIPGGKSGGRCCSCTRGTQRQRCRQRHGGQHSPAEPQKCGPRGGQ 705
R R P PP+ P + IP G+ C C + ++ +H H+ +P KCG G
Sbjct: 243 RVRPPAPGPPKMPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKG 302
Query: 706 WG 711
+G
Sbjct: 303 FG 304
