KCC000796A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000796A_C01 KCC000796A_c01
gttgcccgtgactttatattgcagttgcttatgcgagggtgtacaggcctcacgaatcac
ctgatagaagctctcttccaCCAAGCCAAGTCCCAGATCACCGCGCCCACAACCTTACGC
TTCTTATCGGGAGTCCAATCAATCAGAGGAGCACTAATGGCTTCCGCCGACCGGCGCCCG
AGGGCGCCAAGGAGAATCGCGCTCGCCGCGACCTCCTGCTCAACATCCAGCACTCGGTCC
AGAAGCAGTGGGCTGACGAGAAGATTTTCGAGGCCGATGCGCCCAAGGAGGGCGAGGCCA
CCCGCCCCAAGTTCTTCGGCAACTTTCCCTACCCCTACATGAACGGCCTGCTGCACCTGG
GCCACGCCTTCTCGCTGTCCAAGCTGGAGTTCAAGGCCGCCTATGAGCGGCTGTGCGGCA
AGAACGTGCTGTTCCCGCAGGCATTCCACACCACTGGCATGCCCATTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000796A_C01 KCC000796A_c01
         (468 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_594882.1| leucyl-trna synthetase, cytoplasmic [Schizosacc...   120  6e-27
ref|NP_172433.1| leucyl-tRNA synthetase -related [Arabidopsis th...   110  1e-23
gb|AAG01037.1|AF293346_1 cytosolic leucyl-tRNA synthetase [Candi...   108  2e-23
pir||F96537 hypothetical protein F2J10.2 [imported] - Arabidopsi...   108  3e-23
ref|XP_317169.1| ENSANGP00000018304 [Anopheles gambiae] gi|21300...   105  3e-22

>ref|NP_594882.1| leucyl-trna synthetase, cytoplasmic [Schizosaccharomyces pombe]
           gi|1711638|sp|Q10490|SYLC_SCHPO Putative leucyl-tRNA
           synthetase, cytoplasmic (Leucine--tRNA ligase) (LeuRS)
           gi|7492135|pir||T38407 leucyl-trna synthetase,
           cytoplasmic - fission yeast  (Schizosaccharomyces pombe)
           gi|1314182|emb|CAA97370.1| SPAC26F1.13c
           [Schizosaccharomyces pombe]
          Length = 1111

 Score =  120 bits (302), Expect = 6e-27
 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 6/98 (6%)
 Frame = +3

Query: 192 ENRARRDLLLNIQHSVQKQWADEKIFEADAPKEG------EATRPKFFGNFPYPYMNGLL 353
           EN  +RD L+ ++   Q++W +EK FE DAP E           PKFFGN PYPYMNG L
Sbjct: 21  ENTTKRDTLIELEKKYQQKWQEEKAFEVDAPLEDVPIDELRKKYPKFFGNMPYPYMNGAL 80

Query: 354 HLGHAFSLSKLEFKAAYERLCGKNVLFPQAFHTTGMPI 467
           HLGHAF+LSK+EF  A+ERL GK VLFP  FH TGMPI
Sbjct: 81  HLGHAFTLSKVEFTTAFERLNGKRVLFPMGFHCTGMPI 118

>ref|NP_172433.1| leucyl-tRNA synthetase -related [Arabidopsis thaliana]
           gi|25292955|pir||H86229 hypothetical protein [imported]
           - Arabidopsis thaliana gi|2160156|gb|AAB60719.1| Strong
           similarity to S. pombe leucyl-tRNA synthetase
           (gb|Z73100). [Arabidopsis thaliana]
          Length = 1084

 Score =  110 bits (274), Expect = 1e-23
 Identities = 55/93 (59%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
 Frame = +3

Query: 201 ARRDLLLNIQHSVQKQWADEKIFEADA----PKEGEATRPKFFGNFPYPYMNGLLHLGHA 368
           ARRD LL I+ +V+K W DE +F A++    PK GE    KFF  FP+PYMNG LH+GHA
Sbjct: 9   ARRDRLLEIEATVRKWWEDEDVFRAESCENLPKPGE----KFFSTFPFPYMNGYLHIGHA 64

Query: 369 FSLSKLEFKAAYERLCGKNVLFPQAFHTTGMPI 467
           FSLSK++F +AY RL G NVL P  FH TGMPI
Sbjct: 65  FSLSKVDFASAYHRLRGANVLLPFGFHCTGMPI 97

>gb|AAG01037.1|AF293346_1 cytosolic leucyl-tRNA synthetase [Candida albicans]
          Length = 1097

 Score =  108 bits (271), Expect = 2e-23
 Identities = 51/102 (50%), Positives = 65/102 (63%), Gaps = 10/102 (9%)
 Frame = +3

Query: 192 ENRARRDLLLNIQHSVQKQWADEKIFEADAP----------KEGEATRPKFFGNFPYPYM 341
           E   RRD L++I+   QK WA+EK+FE DAP          ++ +   PKFF    YPYM
Sbjct: 8   EKTFRRDALIDIEKKYQKVWAEEKVFEVDAPTFEECPIEDVEQVQEAHPKFFATMAYPYM 67

Query: 342 NGLLHLGHAFSLSKLEFKAAYERLCGKNVLFPQAFHTTGMPI 467
           NG+LH GHAF+LSK+EF   ++R+ GK  LFP  FH TGMPI
Sbjct: 68  NGVLHAGHAFTLSKVEFATGFQRMNGKRALFPLGFHCTGMPI 109

>pir||F96537 hypothetical protein F2J10.2 [imported] - Arabidopsis thaliana
           gi|8569090|gb|AAF76435.1|AC015445_2 Contains similarity
           to leucyl tRNA synthetase from Homo sapiens gb|D84223.
           [Arabidopsis thaliana]
          Length = 843

 Score =  108 bits (270), Expect = 3e-23
 Identities = 54/93 (58%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
 Frame = +3

Query: 201 ARRDLLLNIQHSVQKQWADEKIFEADA----PKEGEATRPKFFGNFPYPYMNGLLHLGHA 368
           A+RD LL I+ +V+K W DE +F A++    PK GE    KFF  FP+PYMNG LH+GHA
Sbjct: 9   AKRDRLLEIEVAVRKWWEDEDVFRAESRDHLPKPGE----KFFSTFPFPYMNGYLHIGHA 64

Query: 369 FSLSKLEFKAAYERLCGKNVLFPQAFHTTGMPI 467
           FSLSK++F +AY RL G NVL P  FH TGMPI
Sbjct: 65  FSLSKVDFASAYHRLRGANVLLPFGFHCTGMPI 97

>ref|XP_317169.1| ENSANGP00000018304 [Anopheles gambiae] gi|21300090|gb|EAA12235.1|
           ENSANGP00000018304 [Anopheles gambiae str. PEST]
          Length = 1212

 Score =  105 bits (261), Expect = 3e-22
 Identities = 50/87 (57%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
 Frame = +3

Query: 210 DLLLNIQHSVQKQWADEKIFEADAPKEG-EATRPKFFGNFPYPYMNGLLHLGHAFSLSKL 386
           + L  I+  +Q++W  +K+++ DAPKE  +A   KF   FPYPYMNG LHLGHAFSLSK 
Sbjct: 33  EYLQKIEREIQERWQRDKVYDVDAPKEPRKADDEKFLVTFPYPYMNGRLHLGHAFSLSKA 92

Query: 387 EFKAAYERLCGKNVLFPQAFHTTGMPI 467
           EF   Y RL GK VLFP  FH TGMPI
Sbjct: 93  EFAVRYHRLKGKKVLFPLGFHCTGMPI 119



EST assemble image


clone accession position
1 HCL091a12_r AV644598 1 409
2 CL66g03_r AV396762 108 468




Chlamydomonas reinhardtii
Kazusa DNA Research Institute