KCC000785A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000785A_C01 KCC000785A_c01
cttgaccgcattgctggctatgcactcagggcctgtgcaatagtcgtttGACGTTAGGAC
CTCGATTAGCCGCGCCTGACCTCTCAAGATTTGCTTCATAGGACTGGCAGCACTAGAGGC
AAGTCGCGCTGACCGGAGCTGGCGCGCGTGCGTGGGCAAGTCGACTTGAGTTCCCGTGAC
GAGGCTCTTCACAGTGACGAGGCTCTGAGAGGCTCAGGAGTGCTCAAAGCTGCTTGTTTA
ACGCTTTGAATAGATCGAGCAGATGGTTTTCGACGATCCCGCTGAGCTTTGCTCGCCGTG
GTCAACTGGAGTGGCGTCGCATGCGTCCGCGCCATGGTCCGCATCTACATGCTCATCGTC
GTTTGTGTGGGCGGAACCTGGCCCGCACTCGAACACGGCGTCGCTACACACCGTGGGATC
GGCCCTGCCGGCTACGCCCTCACCATCAGCGTCAGCAGCAGCGACTAACGGCGGCACCGG
CTCCAACGCGCTCCCAACGGCGCCGCGGAGCCGCACGATGATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000785A_C01 KCC000785A_c01
         (523 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_511060.2| swallow CG3429-PA [Drosophila melanogaster] gi|...    38  0.069
ref|ZP_00095716.1| COG1530: Ribonucleases G and E [Novosphingobi...    38  0.069
gb|AAL28134.1|AF435014_1 ORF1 [TT virus]                               38  0.091
ref|NP_523380.1| Regulator of G-protein signalling 7 CG9108-PA [...    38  0.091
ref|XP_235835.2| similar to hephaestin [Rattus norvegicus]             38  0.091

>ref|NP_511060.2| swallow CG3429-PA [Drosophila melanogaster]
           gi|730853|sp|P40688|SWA_DROME Swallow protein
           gi|103178|pir||S20806 swallow protein - fruit fly
           (Drosophila melanogaster) gi|8684|emb|CAA39500.1|
           swallow [Drosophila melanogaster]
           gi|17862310|gb|AAL39632.1| LD21771p [Drosophila
           melanogaster] gi|22831818|gb|AAF46160.3| CG3429-PA
           [Drosophila melanogaster]
          Length = 548

 Score = 38.1 bits (87), Expect = 0.069
 Identities = 30/79 (37%), Positives = 39/79 (48%), Gaps = 1/79 (1%)
 Frame = -2

Query: 453 DADGEGVAGRADPTVCSDAVFECGPGSAHTND-DEHVDADHGADACDATPVDHGEQSSAG 277
           DADG+ VA ++  T  SD V   G      +D DE VD D     C+  P+  G  S A 
Sbjct: 57  DADGD-VANKSAKTCVSDPV---GRDQEDEDDYDEDVDGDDHKLGCEKAPLGSGRSSKAV 112

Query: 276 SSKTICSIYSKR*TSSFEH 220
           S + I S Y+KR    F+H
Sbjct: 113 SYQDIHSAYTKR---RFQH 128

>ref|ZP_00095716.1| COG1530: Ribonucleases G and E [Novosphingobium aromaticivorans]
          Length = 512

 Score = 38.1 bits (87), Expect = 0.069
 Identities = 25/72 (34%), Positives = 32/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 294 RRGQLEWRRMRPRHGPHLHAHRRLCGRNLARTRTRR--RYTPWDRPCRLRPHHQRQQQRL 467
           RR +  W + RP  G H    R L GR  +R R RR  R +   R C      +R++ R 
Sbjct: 439 RRKRRRWPQPRPPRGRHRWRGRNLAGRCRSRYRCRRRGRRSRRQRSCHFGRKRRRERSRS 498

Query: 468 TAAPAPTRSQRR 503
             AP    SQ R
Sbjct: 499 AQAPPSWSSQAR 510

>gb|AAL28134.1|AF435014_1 ORF1 [TT virus]
          Length = 719

 Score = 37.7 bits (86), Expect = 0.091
 Identities = 22/56 (39%), Positives = 28/56 (49%)
 Frame = +3

Query: 297 RGQLEWRRMRPRHGPHLHAHRRLCGRNLARTRTRRRYTPWDRPCRLRPHHQRQQQR 464
           R +  WR  R R  P L   RR   R   R R RRR   W RP R RP  +R++++
Sbjct: 10  RPKRRWRWRRRRRRP-LARRRRRPARLARRPRVRRRRFQWGRPRRYRPRRRRRRRK 64

>ref|NP_523380.1| Regulator of G-protein signalling 7 CG9108-PA [Drosophila
           melanogaster] gi|7293293|gb|AAF48674.1| CG9108-PA
           [Drosophila melanogaster]
          Length = 644

 Score = 37.7 bits (86), Expect = 0.091
 Identities = 26/70 (37%), Positives = 35/70 (49%), Gaps = 3/70 (4%)
 Frame = +2

Query: 302 STGVASHASAPWSASTCSSSFVWAEPGPHSNTASLHT-VGSALP--ATPSPSASAAATNG 472
           ++  A+ A    ++S  S     A P P S TA +    G A P  ATPSP+  A  +N 
Sbjct: 13  ASSTAAPAKTDCTSSNSSDPLAVAIPEPQSATAVVGGGAGGAAPGTATPSPTPLANGSNN 72

Query: 473 GTGSNALPTA 502
           GTGS+  P A
Sbjct: 73  GTGSSVSPAA 82

>ref|XP_235835.2| similar to hephaestin [Rattus norvegicus]
          Length = 1724

 Score = 37.7 bits (86), Expect = 0.091
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 447  DGE-GVAGRADPTVCSDAVFECGPGSAHTNDDEH-VDADHGADACDATPVDHGEQSSAGS 274
            DGE G  G  +P      V E GP   H  D EH  D +HG D  D +  DHG     GS
Sbjct: 1621 DGEDGSDGEHEPDGEDGLVGEYGPDGEHGPDGEHGPDGEHGPDGEDVSDGDHGPDGEDGS 1680

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 453  DADGE-GVAGRADPTVCSDAVFECGPGSAHTNDDEHV-DADHGADACDATPVDHGEQSSA 280
            + DGE G+ G   P        E GP   H  D E V D DHG D  D +  +HG     
Sbjct: 1631 EPDGEDGLVGEYGPDGEHGPDGEHGPDGEHGPDGEDVSDGDHGPDGEDGSDGEHGPDGEH 1690

Query: 279  GS 274
            GS
Sbjct: 1691 GS 1692



EST assemble image


clone accession position
1 CL65d11_r AV396602 1 443
2 HCL059e06_r AV642864 50 523




Chlamydomonas reinhardtii
Kazusa DNA Research Institute