Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000782A_C02 KCC000782A_c02
(684 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 43 0.004
pir||T02345 hypothetical protein KIAA0324 - human (fragment) gi|... 43 0.004
dbj|BAA83717.1| RNA binding protein [Homo sapiens] 43 0.004
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 43 0.004
dbj|BAA20782.2| KIAA0324 protein [Homo sapiens] 43 0.004
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 43.1 bits (100), Expect = 0.004
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -2
Query: 668 AQRTRL*AATRPPPWPPASSGGTRRNTSGRAAAAAGPWPS*ACPLAAARPQSPTQPWRLR 489
A R + + + P P PA RR+ SG ++ GP P + ++ P+ P + R
Sbjct: 1611 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESS-PEHPPKSRTAR 1669
Query: 488 CASQSCPSPRAADRGPPGRRATR 420
S+S P P+ R PP RR++R
Sbjct: 1670 RGSRSSPEPKTKSRTPPRRRSSR 1692
Score = 35.0 bits (79), Expect = 1.1
Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 8/119 (6%)
Frame = -2
Query: 647 AATRPPPWPPASSGGTRRNTSGRAAA---AAGPWPS*ACPLA--AARPQSPTQPWRLRCA 483
+ATRP P P SS G A P P PL+ P S P R R
Sbjct: 346 SATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSP 405
Query: 482 SQS---CPSPRAADRGPPGRRATRC*MDASSHSGDEPWLPVHPRHRAQLSALPFSRSRA 315
+S P +++ PP + T+ ASS P HR ++S+ P S++R+
Sbjct: 406 PKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHR-EISSSPTSKNRS 463
>pir||T02345 hypothetical protein KIAA0324 - human (fragment)
gi|2996650|gb|AAC08453.1| KIAA0324 [Homo sapiens]
Length = 1791
Score = 43.1 bits (100), Expect = 0.004
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -2
Query: 668 AQRTRL*AATRPPPWPPASSGGTRRNTSGRAAAAAGPWPS*ACPLAAARPQSPTQPWRLR 489
A R + + + P P PA RR+ SG ++ GP P + ++ P+ P + R
Sbjct: 643 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESS-PEHPPKSRTAR 701
Query: 488 CASQSCPSPRAADRGPPGRRATR 420
S+S P P+ R PP RR++R
Sbjct: 702 RGSRSSPEPKTKSRTPPRRRSSR 724
>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
Length = 1275
Score = 43.1 bits (100), Expect = 0.004
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -2
Query: 668 AQRTRL*AATRPPPWPPASSGGTRRNTSGRAAAAAGPWPS*ACPLAAARPQSPTQPWRLR 489
A R + + + P P PA RR+ SG ++ GP P + ++ P+ P + R
Sbjct: 134 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESS-PEHPPKSRTAR 192
Query: 488 CASQSCPSPRAADRGPPGRRATR 420
S+S P P+ R PP RR++R
Sbjct: 193 RGSRSSPEPKTKSRTPPRRRSSR 215
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 43.1 bits (100), Expect = 0.004
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -2
Query: 668 AQRTRL*AATRPPPWPPASSGGTRRNTSGRAAAAAGPWPS*ACPLAAARPQSPTQPWRLR 489
A R + + + P P PA RR+ SG ++ GP P + ++ P+ P + R
Sbjct: 1611 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESS-PEHPPKSRTAR 1669
Query: 488 CASQSCPSPRAADRGPPGRRATR 420
S+S P P+ R PP RR++R
Sbjct: 1670 RGSRSSPEPKTKSRTPPRRRSSR 1692
Score = 35.0 bits (79), Expect = 1.1
Identities = 34/119 (28%), Positives = 48/119 (39%), Gaps = 8/119 (6%)
Frame = -2
Query: 647 AATRPPPWPPASSGGTRRNTSGRAAA---AAGPWPS*ACPLA--AARPQSPTQPWRLRCA 483
+ATRP P P SS G A P P PL+ P S P R R
Sbjct: 346 SATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSP 405
Query: 482 SQS---CPSPRAADRGPPGRRATRC*MDASSHSGDEPWLPVHPRHRAQLSALPFSRSRA 315
+S P +++ PP + T+ ASS P HR ++S+ P S++R+
Sbjct: 406 PKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHR-EISSSPTSKNRS 463
>dbj|BAA20782.2| KIAA0324 protein [Homo sapiens]
Length = 1783
Score = 43.1 bits (100), Expect = 0.004
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -2
Query: 668 AQRTRL*AATRPPPWPPASSGGTRRNTSGRAAAAAGPWPS*ACPLAAARPQSPTQPWRLR 489
A R + + + P P PA RR+ SG ++ GP P + ++ P+ P + R
Sbjct: 642 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESS-PEHPPKSRTAR 700
Query: 488 CASQSCPSPRAADRGPPGRRATR 420
S+S P P+ R PP RR++R
Sbjct: 701 RGSRSSPEPKTKSRTPPRRRSSR 723
