KCC000776A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000776A_C01 KCC000776A_c01
tgccgctaggCAAACAAAAGGCGGATTAATTCACCGTGGCTTGCTGGGGCTTAGGTGCAC
GTACTCAGGCCGTGTGCAGGCCGAAGTTGCAGTTGAATTTTCATTACATCATCATTTACG
TTTATAATAACACGATAGCATCTACCTGAGAGCGTATTGAGCAGCACTTGGAGGAAATGC
GCCGGGCGATCGCGCTGGGCGTTGGGCTTGCCCTCCTTGGGCTTCTGCTGCCGGGATCGC
TGGCGTTCAAGGAGAATGAGTTTAAGAAGTGCGCCCAGACGAGCTTCTGCTCCCGGAACA
GGAATGTGCAGCAGGGCGCCAACTTCGAGATTGTCCCGGCCTCAGTTACGCTAAACACGG
CGACGCTGACCGCGACGCTCATGAACAAGCAGGCCAGCAAGCACCTGCAGCTCACGCTGA
CGGCGCACGCCGATGGCTTCGTGCGCCTGCTCATAGACGAGTTGCCATCAGTGGGCCGCT
ACCAGGTCCCCAGCGACATCCTGGTGTCTGGGTGGGAGACCCGCAAGGCGGCGATCAAGG
AGGAGAGCCGCAGCGCCAACGGCGTCGTGCTGGTGACTGGGGACACCAAGCTGGAGCTCA
ACTACGCACCGTTCACACTGGCGGTCAGCGTTAAGGGCGTGCCGGCGCTGCAGCTCAACA
GCCGCAACCTGTTCAACTTTGAGCACCGCCGCCCCAAGCAGGACTCCGACCCTGCGGGCT
ACTGGGAGGAGACGTGGATGGGCCACACCGACACCAAGCCTAAGGGCCCTGAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000776A_C01 KCC000776A_c01
         (774 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB49757.1| glucosidase II [Sus scrofa]                             96  5e-19
pir||T07391 probable alpha-glucosidase (EC 3.2.1.20) - potato gi...    90  4e-17
ref|NP_201189.1| glycosyl hydrolase family 31 [Arabidopsis thali...    89  6e-17
dbj|BAC27099.1| unnamed protein product [Mus musculus] gi|263494...    89  8e-17
emb|CAA04006.1| Glucosidase II [Homo sapiens]                          86  9e-16

>gb|AAB49757.1| glucosidase II [Sus scrofa]
          Length = 944

 Score = 96.3 bits (238), Expect = 5e-19
 Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 35/232 (15%)
 Frame = +3

Query: 180 RRAIALGVGLALLGLLLPGSLAFKENEFKKCAQTSFCSRNRNVQQGAN-FEIVPASVTLN 356
           RR    G+ LA LG+ L  +LA   + FK C ++SFC R R+++ G + +  +  S+ L 
Sbjct: 11  RRRSWTGLVLACLGVCLGLTLAVDRSNFKTCEESSFCKRQRSIRPGQSPYRALLDSLQLG 70

Query: 357 TATLTATLMNKQASKHLQLTLTAHADGFVRLLIDEL-PSVGRYQVPSDILVSGWETRKAA 533
             TLT  L+N+     L L L        R+ IDEL P   RY+VP D+LV+   T + +
Sbjct: 71  PDTLTIHLINEVTKVLLVLELQGLQKNMTRIRIDELEPRRPRYRVP-DVLVAEPPTARLS 129

Query: 534 IKEESRSANGVVLVTGDTKLELNYAPFTLAVSVKGVPALQLNSRNLFNFEHRRP------ 695
           +  +  ++  V +  G  K+ L   PF L +       L +N+R L NFEH+R       
Sbjct: 130 VSGQDDNSVEVTVAEGPYKIILTARPFRLDLLEDRSLLLSVNARGLLNFEHQRAPRVSQG 189

Query: 696 ---------------------------KQDSDPAGYWEETWMGHTDTKPKGP 770
                                      K + D  G WEET+  H+D+KP GP
Sbjct: 190 SKDPAEGDGAQPEEAPGDGDKPEEIQGKAEKDEPGAWEETFKTHSDSKPYGP 241

>pir||T07391 probable alpha-glucosidase (EC 3.2.1.20) - potato
           gi|2648032|emb|CAA04707.1| alpha-glucosidase [Solanum
           tuberosum]
          Length = 919

 Score = 90.1 bits (222), Expect = 4e-17
 Identities = 76/220 (34%), Positives = 111/220 (49%), Gaps = 23/220 (10%)
 Frame = +3

Query: 183 RAIALGVGLALLGLLLPGSLAFKENEFKKCAQTSFCSRNRNVQQGA-NFEIVPASVTLNT 359
           RA  L   L LL L +  + ++K+ EF+ C QT FC R R+ + G+ N  +  A V+++ 
Sbjct: 2   RAPLLLYPLLLLLLFVTSAYSWKKEEFRNCDQTPFCKRARSRKPGSCNLRV--ADVSISD 59

Query: 360 ATLTATLMNK-------QASKHLQLTLTAHADGFVRLLIDE----LPSVGRYQVP----S 494
             L A L+ K       Q +K L LTL+ + DG +R+ IDE     P   R++VP     
Sbjct: 60  GDLIAKLVPKEENPESEQPNKPLVLTLSVYQDGVMRVKIDEDQNLNPPKKRFEVPEVIEE 119

Query: 495 DIL-VSGWETRKAAIKEES----RSANGVVLVTGDTKLELNYAPFTLAV--SVKGVPALQ 653
           D L    W TR   +KEE      S + V  ++   +  L + PF +    S  G   L 
Sbjct: 120 DFLNTKLWLTR---VKEEQIDGVSSFSSVFYLSDGYEGVLRHDPFEVFARESGSGKRVLS 176

Query: 654 LNSRNLFNFEHRRPKQDSDPAGYWEETWMGHTDTKPKGPE 773
           +NS  LF+FE  R K++ D    WEE +  HTDT+P GP+
Sbjct: 177 INSNGLFDFEQLREKKEGDD---WEEKFRSHTDTRPYGPQ 213

>ref|NP_201189.1| glycosyl hydrolase family 31 [Arabidopsis thaliana]
           gi|10177672|dbj|BAB11032.1| glucosidase II alpha subunit
           [Arabidopsis thaliana]
          Length = 921

 Score = 89.4 bits (220), Expect = 6e-17
 Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 21/210 (10%)
 Frame = +3

Query: 207 LALLGLLLPGSLAFKENEFKKCAQTSFCSRNRNVQQGANFEIVPASVTLNTATLTATLMN 386
           L+L+      +L++K+ EF+ C QT FC R R+   GA   ++   V++    L A L+ 
Sbjct: 8   LSLICFCSQTALSWKKEEFRSCDQTPFCKRARSRTPGA-CSLIVGDVSITDGDLVAKLLP 66

Query: 387 KQAS-------KHLQLTLTAHADGFVRLLIDE----LPSVGRYQVPSDILVSGWETRKAA 533
           K  +       K L L+L+ + DG VRL IDE     P   R+QVP D++VS +E +K  
Sbjct: 67  KAPNQGDGDQIKPLILSLSVYKDGIVRLKIDEDHSLNPPKKRFQVP-DVVVSEFEEKKIW 125

Query: 534 IKEES-------RSANGVVLVTGDTKLELNYAPFTLAVSVKGVP---ALQLNSRNLFNFE 683
           +++ +        S + VV V+   +  + + PF + V  K       + LNS  LF+FE
Sbjct: 126 LQKVATETISGDTSPSSVVYVSDGYEAVVRHDPFEVYVREKSGDRRRVVSLNSHGLFDFE 185

Query: 684 HRRPKQDSDPAGYWEETWMGHTDTKPKGPE 773
               K + D    WEE +  HTD++P GP+
Sbjct: 186 QLGRKTEGD---NWEEKFRTHTDSRPSGPQ 212

>dbj|BAC27099.1| unnamed protein product [Mus musculus] gi|26349461|dbj|BAC38370.1|
           unnamed protein product [Mus musculus]
          Length = 944

 Score = 89.0 bits (219), Expect = 8e-17
 Identities = 69/232 (29%), Positives = 107/232 (45%), Gaps = 35/232 (15%)
 Frame = +3

Query: 180 RRAIALGVGLALLGLLLPGSLAFKENEFKKCAQTSFCSRNRNVQQGAN-FEIVPASVTLN 356
           RR   L + LA LG+ L  +LA   + FK C ++SFC R R+++ G + +  +  ++ L 
Sbjct: 11  RRRSWLSLVLAYLGVCLGITLAVDRSNFKTCDESSFCKRQRSIRPGLSPYRALLDTLQLG 70

Query: 357 TATLTATLMNKQASKHLQLTLTAHADGFVRLLIDEL-PSVGRYQVPSDILVSGWETRKAA 533
              LT  L+++     L L L        R+ IDEL P   RY+VP D+LV+   T + +
Sbjct: 71  PDALTVHLIHEVTKVLLVLELQGLQKNMTRIRIDELEPRRPRYRVP-DVLVADPPTARLS 129

Query: 534 IKEESRSANGVVLVTGDTKLELNYAPFTLAVSVKGVPALQLNSRNLFNFEHRR----PKQ 701
           +     ++  + +  G  K+ L   PF L +       L +N+R L  FEH+R    P++
Sbjct: 130 VSGRDDNSVELTVAEGPYKIILTAQPFRLDLLEDRSLLLSVNARGLMAFEHQRAPRVPQE 189

Query: 702 DSDPA-----------------------------GYWEETWMGHTDTKPKGP 770
             DPA                             G WEET+  H+D+KP GP
Sbjct: 190 SKDPAEGNGAQPEATPGDGDKPEETQEKAEKDEPGAWEETFKTHSDSKPYGP 241

>emb|CAA04006.1| Glucosidase II [Homo sapiens]
          Length = 944

 Score = 85.5 bits (210), Expect = 9e-16
 Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 35/232 (15%)
 Frame = +3

Query: 180 RRAIALGVGLALLGLLLPGSLAFKENEFKKCAQTSFCSRNRNVQQGAN-FEIVPASVTLN 356
           RR     + LA LG+ L  +LA   + FK C ++SFC R R+++ G + +  +  S+ L 
Sbjct: 11  RRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKRQRSIRPGLSPYRALLDSLQLG 70

Query: 357 TATLTATLMNKQASKHLQLTLTAHADGFVRLLIDEL-PSVGRYQVPSDILVSGWETRKAA 533
             +LT  L+++     L L L        R  IDEL P   RY+VP D+LV+     + +
Sbjct: 71  PDSLTVHLIHEVTKVLLVLELQGLQKNMTRFRIDELEPRRPRYRVP-DVLVADPPIARLS 129

Query: 534 IKEESRSANGVVLVTGDTKLELNYAPFTLAVSVKGVPALQLNSRNLFNFEHRRP------ 695
           +     ++  + +  G  K+ L   PF L +       L +N+R L  FEH+R       
Sbjct: 130 VSGRDENSVELTMAEGPYKIILTARPFRLDLLEDRSLLLSVNARGLLEFEHQRAPRVSQG 189

Query: 696 ---------------------------KQDSDPAGYWEETWMGHTDTKPKGP 770
                                      K + D  G WEET+  H+D+KP GP
Sbjct: 190 SKDPAEGDGAQPEETPRDGDKPEETQGKAEKDEPGAWEETFKTHSDSKPYGP 241



EST assemble image


clone accession position
1 LCL071b03_r AV630018 1 327
2 MXL078b03_r BP097586 11 393
3 MXL077f04_r BP097551 11 375
4 HCL039e06_r AV641735 13 518
5 CL64e09_r AV396620 45 547
6 CL73a08_r AV396977 341 774




Chlamydomonas reinhardtii
Kazusa DNA Research Institute