KCC000768A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000768A_C01 KCC000768A_c01
GGAGAAAGCTAGTATTACATCGAGCTCCGTCCTTTGCGCGTGGTCTTCTCTCTCATTGAC
AAGGTGTATACCATACCAAAACGTTGTGCAGCAAAGAATTTGTGCTTCCCTTTCGCTCTC
GACGACAGGCCCTCCAACAACACACTCCGCCGCCGGCAGTGTGTCAACAAGACCCCGCCT
CGCGCACTGTACACACAAGACACACTCCAAAACCGCAACTCACTCCTCAAAGAGTCGGCA
CAGAAACGGCCGAACACTGTGATGCACTACGGACACACTATCAAAACAGAGGGGTAAAAC
TACGCAAGCCCCTTCACCGCAATGGGGACGTCCAAACCTTACCGCCACCGAACTTCGGGA
AAATGTCCGACGTACGTGTCATCAAGCTACACAACCACTAACCAGGCGCAAACTTCTGCC
TGCAAGCGCTATGCTGGGAGCAAAGGGCGGGGGCCTTCGCGGACAAGGGCACGGGGCTTG
CAATCCGGCCTCCAGCTCTTAGACGCTGCGACCCTCGCcctcgctccttaaccgcccata
cccagtcacgtcaacgcattgtggcctccacaacaacaaccgcggcacgcctgccttc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000768A_C01 KCC000768A_c01
         (598 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO52185.1| similar to hypothetical protein [Schizosaccharomy...    42  0.007
ref|XP_329258.1| predicted protein [Neurospora crassa] gi|289263...    40  0.025
ref|NP_187479.1| hypothetical protein [Arabidopsis thaliana] gi|...    40  0.032
ref|NP_595324.1| putative transcriptional regulator [Schizosacch...    35  1.0
ref|ZP_00061707.1| COG0515: Serine/threonine protein kinase [Clo...    35  1.0

>gb|AAO52185.1| similar to hypothetical protein [Schizosaccharomyces pombe]
           [Dictyostelium discoideum]
          Length = 657

 Score = 42.0 bits (97), Expect = 0.007
 Identities = 41/145 (28%), Positives = 56/145 (38%)
 Frame = +2

Query: 71  PYQNVVQQRICASLSLSTTGPPTTHSAAGSVSTRPRLAHCTHKTHSKTATHSSKSRHRNG 250
           PY N+ Q    ++ S S+T  P+T S   S +T P  A  T  T   TA+          
Sbjct: 501 PYCNLPQTSSSSTTSSSSTSSPSTSST--SSTTSPSTASTTSTTSPSTAS---------- 548

Query: 251 RTL*CTTDTLSKQRGKTTQAPSPQWGRPNLTATELRENVRRTCHQATQPLTRRKLLPASA 430
                TT T S     TT   SP    P+ ++T L  +   T   A+   +   L   S 
Sbjct: 549 -----TTSTTSPSTASTTSTTSPSTASPSTSSTSLTSSTSSTTKTAS---SSSSLSSTSG 600

Query: 431 MLGAKGGGLRGQGHGACNPASSS*T 505
              +      G GH +   ASSS T
Sbjct: 601 TGTSSSSSNSGGGHISLVVASSSST 625

>ref|XP_329258.1| predicted protein [Neurospora crassa] gi|28926383|gb|EAA35359.1|
           predicted protein [Neurospora crassa]
          Length = 1969

 Score = 40.0 bits (92), Expect = 0.025
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
 Frame = +2

Query: 167 TRPRLAHCTHKTHSKTATHSSKSRHRNGRTL*CTTDTLSKQRGKTTQAPSPQWGRPNLTA 346
           TR R+A      +++  T ++++R     T   T+ T +  R  T    S    R   T 
Sbjct: 16  TRARVASSAVTKNARAMTAAARARSATTSTTSATSATTAPSRA-TAPTASTSLKRKTRTD 74

Query: 347 TELRENVRRTCHQ-ATQPLTRRKLLPASAMLGAKGGGLRGQG--HGACN---PASSS*TL 508
            +  +N     H+ A  P+TR   LPA+A+   +    R +   +GA     PASSS   
Sbjct: 75  DDEDDNDHHAKHRSAPAPVTRPVRLPAAALATTRATRARARNPANGAAKTSRPASSSLAS 134

Query: 509 RPSPSLLNRPYPVTS 553
           RP+ S   RP  +T+
Sbjct: 135 RPASSASTRPPVITA 149

>ref|NP_187479.1| hypothetical protein [Arabidopsis thaliana]
           gi|12322732|gb|AAG51356.1|AC012562_17 hypothetical
           protein; 44869-47459 [Arabidopsis thaliana]
           gi|34365761|gb|AAQ65192.1| At3g08670 [Arabidopsis
           thaliana]
          Length = 567

 Score = 39.7 bits (91), Expect = 0.032
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
 Frame = +2

Query: 104 ASLSLSTTGPPTTHSAAGSVSTRPRLAHCTHKTHSKTATHSSKSRHRNGRTL*CTTDTLS 283
           +S S+S+   P++ S+  S S RP     T    S  +  S+ SR R G +    + ++ 
Sbjct: 183 SSASVSSYIRPSSPSSRSSSSARPS----TPTRTSSASRSSTPSRIRPGSS----SSSMD 234

Query: 284 KQRGKTTQAPSPQWGRPNLTATELRENVRRTCHQATQPLTRRKLLPASAMLGAKGGGLRG 463
           K R   +  PS    RP L+A+       R   + + P TRR   P+S  L A  G    
Sbjct: 235 KARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTP-TRRS--PSSTSLSATSGPTIS 291

Query: 464 QGHGACNPASSS*TLRPS---PSLLNRP 538
            G  A N  +     RPS   P + N P
Sbjct: 292 GGRAASNGRTGPSLSRPSSPGPRVRNTP 319

>ref|NP_595324.1| putative transcriptional regulator [Schizosaccharomyces pombe]
           gi|7491697|pir||T40527 hypothetical protein SPBC530.11c
           - fission yeast  (Schizosaccharomyces pombe)
           gi|3150258|emb|CAA19177.1| SPBC530.11c
           [Schizosaccharomyces pombe]
          Length = 819

 Score = 34.7 bits (78), Expect = 1.0
 Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 6/158 (3%)
 Frame = +1

Query: 118 LDDRPSNNTLRRRQCVNK--TPPRALYTQDTLQNRNSLLKESAQKRPNTVMHYGHTIKTE 291
           L D P +  LR+R   N      +  +T+    N N L  E AQK P ++ H  +T  T 
Sbjct: 13  LSDSPEDPFLRKRLASNTQLNQKKIRFTE----NENDLSPERAQKEPVSIPHGRYTWSTS 68

Query: 292 G*NYAS--PFTAMGTSKPYRHRTSGKCPTYVSSSYTTTNQAQTSACKRYAGSKGRGPS-R 462
               +S  P T      P+ H  +   PT+  S    +  +  +    Y  S     S  
Sbjct: 69  PDTDSSHLPSTPPTVDIPFHHPHTIHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFS 128

Query: 463 TRARGLQSGLQLLDAATLALAP*PPIPSHVNA-LWPPQ 573
             A  +QS   L D A +     P  PSHV+  L PP+
Sbjct: 129 PPASKIQSHEPLNDMAAVH----PLRPSHVSGPLSPPE 162

>ref|ZP_00061707.1| COG0515: Serine/threonine protein kinase [Clostridium thermocellum
           ATCC 27405] gi|548938|sp|Q06853|SLP2_CLOTM CELL SURFACE
           GLYCOPROTEIN 2 PRECURSOR (S-LAYER PROTEIN 2)
           gi|7476014|pir||T18263 S-layer protein - Clostridium
           thermocellum gi|296882|emb|CAA47842.1| S-layer protein
           [Clostridium thermocellum]
          Length = 688

 Score = 34.7 bits (78), Expect = 1.0
 Identities = 27/85 (31%), Positives = 37/85 (42%), Gaps = 4/85 (4%)
 Frame = +2

Query: 302 TQAPSPQWGRPNLTATELRENVRRTCHQATQ-PLTRRKLLPASAMLGAKGGGLRGQGHGA 478
           TQ P P    P+ T T+            TQ P          +  G  GGGL G G GA
Sbjct: 380 TQTP-PTTTAPSQTPTQTPPTTTAPSQTPTQTPAVTPTQSATPSDPGGGGGGLPGGGGGA 438

Query: 479 CNPASS---S*TLRPSPSLLNRPYP 544
            NP++S   + T +P+P+   +P P
Sbjct: 439 VNPSASPTPTPTSKPTPTATKKPEP 463



EST assemble image


clone accession position
1 LC072d07_r AV624062 1 470
2 MXL051c10_r BP096029 46 527
3 CL63e11_r AV396540 91 644




Chlamydomonas reinhardtii
Kazusa DNA Research Institute