KCC000737A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000737A_C01 KCC000737A_c01
tgcaaaccgcgacagattatctacgtgtgcctgatacactagtacacacaaagttgcccc
gacatcgTTCTGTGAGTCGCTTCGCTCTTGAAGGCCTTAAAACCTGTATCGAAATCAACA
TTTTTCAGCGTTCATTCATTTGCTTCGCATAGCTCACCTTGTTAGCTGCGCCGGGTTAAC
CTAATAAGCCAGCGCGGGGCGAGCTGACGAGCCCGCGGTTGGCAATGTCTAATCTACAGG
GAGGCGGCGGCGGCGGCGCGGGCTACAGCCACTTCGCGACTGCCATGCAGCACGGAGGCG
GCCCCCACGGAGCCATCGCACCTCCAGGCCCCTACCAGGCCCCCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000737A_C01 KCC000737A_c01
         (347 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB92575.1| P0497A05.19 [Oryza sativa (japonica cultivar-gro...    43  0.001
dbj|BAC55695.1| putative diaphanous homologue [Oryza sativa (jap...    33  0.021
dbj|BAC87651.1| unnamed protein product [Homo sapiens]                 37  0.071
ref|XP_313937.1| ENSANGP00000003404 [Anopheles gambiae] gi|21297...    37  0.093
ref|NP_824612.1| hypothetical protein [Streptomyces avermitilis ...    37  0.093

>dbj|BAB92575.1| P0497A05.19 [Oryza sativa (japonica cultivar-group)]
           gi|20804929|dbj|BAB92608.1| P0456E05.7 [Oryza sativa
           (japonica cultivar-group)]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 21/35 (60%), Positives = 23/35 (65%)
 Frame = +3

Query: 240 GGGGGGAGYSHFATAMQHGGGPHGAIAPPGPYQAP 344
           GGGGGG GY +   A  HGGG +GA AP G Y AP
Sbjct: 34  GGGGGGGGYPYGQDA--HGGGYYGAPAPQGGYAAP 66

>dbj|BAC55695.1| putative diaphanous homologue [Oryza sativa (japonica
            cultivar-group)]
          Length = 1627

 Score = 32.7 bits (73), Expect(2) = 0.021
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 331  GPGGAMAPWGPPPCCMAVAKWL*PAPPPPPP 239
            G GG   P  PPP   +    + P PPPPPP
Sbjct: 910  GVGGNTPPAPPPPPLRSTVPAISPPPPPPPP 940

 Score = 25.0 bits (53), Expect(2) = 0.021
 Identities = 10/22 (45%), Positives = 13/22 (58%)
 Frame = -2

Query: 262  PAPPPPPPCRLDIANRGLVSSP 197
            P PPPPPP     ++R   S+P
Sbjct: 954  PPPPPPPPPPSAPSSRAFSSAP 975

>dbj|BAC87651.1| unnamed protein product [Homo sapiens]
          Length = 121

 Score = 37.0 bits (84), Expect = 0.071
 Identities = 18/35 (51%), Positives = 19/35 (53%)
 Frame = -2

Query: 343 GAW*GPGGAMAPWGPPPCCMAVAKWL*PAPPPPPP 239
           GA  G GG  AP  P P   + A  L P PPPPPP
Sbjct: 62  GAGAGAGGVTAPRPPLPALHSAAPGLPPPPPPPPP 96

>ref|XP_313937.1| ENSANGP00000003404 [Anopheles gambiae] gi|21297327|gb|EAA09472.1|
           ENSANGP00000003404 [Anopheles gambiae str. PEST]
          Length = 663

 Score = 36.6 bits (83), Expect = 0.093
 Identities = 20/51 (39%), Positives = 23/51 (44%)
 Frame = +3

Query: 180 PNKPARGELTSPRLAMSNLQGGGGGGAGYSHFATAMQHGGGPHGAIAPPGP 332
           P  PA G+   PR  +  +  GG GG G  H    M   GGP G   P GP
Sbjct: 174 PTPPAPGQSNGPRPPVPGMPMGGPGGPGGGHGGPGMGGPGGPPGG-GPGGP 223

>ref|NP_824612.1| hypothetical protein [Streptomyces avermitilis MA-4680]
           gi|29607088|dbj|BAC71147.1| hypothetical protein
           [Streptomyces avermitilis MA-4680]
          Length = 412

 Score = 36.6 bits (83), Expect = 0.093
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -2

Query: 337 W*GPGGAMAPWGPPPCCMAVAKWL*PAPPPPP 242
           W  P  A  PW PPP   A   W  P PPPPP
Sbjct: 131 WAAPPPAEEPWSPPP--SASTPWSSPPPPPPP 160

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 337 W*GPGGAMAPWGPPPCCMAVAKWL*PAPPPP 245
           W  P     PW  PP   A   W  PAP PP
Sbjct: 97  WAAPPTPEEPWSSPPSPSAEEPWSSPAPAPP 127



EST assemble image


clone accession position
1 CL58h06_r AV396231 1 215
2 HCL008e01_r AV639996 68 347




Chlamydomonas reinhardtii
Kazusa DNA Research Institute