KCC000718A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000718A_C01 KCC000718A_c01
aaacctccacggcttcacctagcactccaccgccactttagcactcatttactgagtctg
tcaggcaatccggctcgcctGTCGCCCATGCCTCCCTCTCATGTGCGTCTTGCACGTCGC
TACCCTCCAGTTGTCCTGGACATATCGCCGAATCGGGGCATTCTGTAAGGCTACCTGCAG
CAAGCAACAACGCGCCAAGACCCCTCCAGTCCCCCAAATCGGATGCACTGCCTCCTCAAT
TTCCACAACATGCACTTGACGAGTGTTGCGGAACTCATGCACGTCAGGCAATCAGCATGC
CGCCGAAGTGAACACGTACAACCCCCCAACAGTCTCCGCATCCTCGCTCTTGCCTCACAC
ATAACACATGCATGGCACTACCGGTACGAGGTGCAATCCTGTAACTTGCAAACCCAGATG
AGTTCACAATTCTGCTCAGAGACACTGTTCCAGCCAGGTTCCAGCGGCATGGCCCATTAC
AAACTCGCATCACATGCTCACACCCAATATCGAGTGGCGAGCCAGCATGCGCAACGTCTG
CAATCGTGTCTGCAATGGCCTACTGTATTGCTCAAATGGCCGGACGTGTCCGCATCACCG
GCCAAATCGCCAAGTccattacctcctgaatgctgccggtccttgcaccaagtttcatcc
gctacgcaaattcttgtcgtctcagcgcctccgtg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000718A_C01 KCC000718A_c01
         (695 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD27470.1| SPAPB18E9.04c [Schizosaccharomyces pombe]              38  0.17
emb|CAC00483.1| putative Hunchback protein [Megaselia abdita]          38  0.17
emb|CAA70117.1| s18 chorion protein [Ceratitis capitata]               37  0.29
ref|XP_210663.2| similar to mal5, sta1, len: 1367, CAI: 0.3, AMY...    36  0.49
ref|ZP_00129163.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase...    35  0.84

>emb|CAD27470.1| SPAPB18E9.04c [Schizosaccharomyces pombe]
          Length = 800

 Score = 37.7 bits (86), Expect = 0.17
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3

Query: 3   TSTASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLP 125
           TST+S STPPP   + T S   S SP+   S SC + TS+P
Sbjct: 362 TSTSSTSTPPP--PASTSSTGTSSSPLLSTSTSCTTSTSIP 400

 Score = 36.2 bits (82), Expect = 0.49
 Identities = 59/257 (22%), Positives = 94/257 (35%), Gaps = 26/257 (10%)
 Frame = +3

Query: 3   TSTASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLPSSCPGHI-----------A 149
           TST+S S P P   + T S   + SP+   S SC + TS+P+     +           +
Sbjct: 198 TSTSSTSIPIP--PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTS 255

Query: 150 ESGHSVRLPAAS------NNAPRPLQSPK---SDALPP----QFPQHALDECCGTHARQA 290
            S  S+ +P  S      N++P P  S     S ++PP      P         T +   
Sbjct: 256 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTST 315

Query: 291 ISMPPK*TRTTPQQSPHPRSCLTHNTCMALPVRGAIL*LANPDEFTILLRDTVPARFQRH 470
              P   + T    SP P +  +  T  ++P  G           T  +  TVP      
Sbjct: 316 PPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTG---------NSTTPVTPTVP------ 360

Query: 471 GPLQTRITCS--HPISSGEPACATSAIVSAMAYCIAQMAGRVRITGQIAKSITS*MLPVL 644
            P  T  T +   P S+     ++S ++S    C    +  +  TG     +T  + P  
Sbjct: 361 -PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTS 417

Query: 645 APSFIRYANSCRLSASV 695
           + + +   N C  S SV
Sbjct: 418 SSTPLTTTN-CTTSTSV 433

 Score = 32.0 bits (71), Expect = 9.3
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
 Frame = +3

Query: 3   TSTASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLPSSCPGHIAESGHSVRLPAA 182
           TST+S S P P   + T S   + +P+   S SC + TS+P                P  
Sbjct: 141 TSTSSTSIPIP--PTSTSSTDTNSNPLPTTSTSCTTSTSIP----------------PTG 182

Query: 183 SNNAPRPLQSPKSDALPPQFPQHALDECCGTHARQAISMPPK*TRTT-PQQSPHPRSCLT 359
            +++   L +P +  +PP            + +  +I +PP  T +T    SP P +  +
Sbjct: 183 GSSS---LSTPITPTVPPT-----------STSSTSIPIPPTSTSSTDTNSSPLPTTSTS 228

Query: 360 HNTCMALPVRGA 395
             T  ++P  G+
Sbjct: 229 CTTSTSIPTGGS 240

>emb|CAC00483.1| putative Hunchback protein [Megaselia abdita]
          Length = 620

 Score = 37.7 bits (86), Expect = 0.17
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +3

Query: 3   TSTASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLPSSCPGHIAESGHSVR--LP 176
           T+  +  TP P   + T+S   +GS       +  +   LPS+    I+   H+++  L 
Sbjct: 55  TNEMNSMTPSPRGENETQSFFGNGS--TQLGFNPLTPPGLPSAVLPPISHFHHAMQSQLA 112

Query: 177 AASNNAPRPLQSPKSDALPPQFPQHALD 260
           A++NN P P  +P  D  PP+ P   +D
Sbjct: 113 ASANNTPTPTSTPPMDVTPPKSPSFLMD 140

>emb|CAA70117.1| s18 chorion protein [Ceratitis capitata]
          Length = 332

 Score = 37.0 bits (84), Expect = 0.29
 Identities = 47/194 (24%), Positives = 74/194 (37%), Gaps = 12/194 (6%)
 Frame = +3

Query: 57  SVRQSGSPVAHASLSCASCTSLPSSCPG----HIAESG---HSVRLPAASNNAPRPLQSP 215
           S+  +G P+   S S A  +   S   G    ++ +SG   +S   PAAS +AP P  + 
Sbjct: 122 SLPSAGGPIIDTSGSSAGSSHQGSYPSGGNLAYVIQSGGSSYSAPAPAASYSAPAPAPAA 181

Query: 216 KSDALPPQFPQHALDECCGTHARQAISMPPK*TR-TTPQQSPHPRSCLTHNTCMALPVRG 392
              A  P  P +++ +C  T A   +       + +TP  +P P +       +      
Sbjct: 182 SYSAPAPSAPSYSV-QCSSTSASSFLQCSSSFLQCSTPAPAPAPAAYSAPAPAVYSAPAP 240

Query: 393 AIL*LANPDEFTILLRDTVPARFQRHGP----LQTRITCSHPISSGEPACATSAIVSAMA 560
           A      P  ++       PA +    P           S P SSG  A A +A   A A
Sbjct: 241 AAYSAPAPAVYSAPAPAPAPAAYSAPAPAAYSAPAPAAYSAPASSGYGASAPAAAAPAAA 300

Query: 561 YCIAQMAGRVRITG 602
           +  +  A R  I+G
Sbjct: 301 HQPSAAAARSYISG 314

>ref|XP_210663.2| similar to mal5, sta1, len: 1367, CAI: 0.3, AMYH_YEAST P08640
           GLUCOAMYLASE S1 (EC 3.2.1.3) [Homo sapiens]
          Length = 387

 Score = 36.2 bits (82), Expect = 0.49
 Identities = 24/70 (34%), Positives = 29/70 (41%)
 Frame = +3

Query: 6   STASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLPSSCPGHIAESGHSVRLPAAS 185
           ST S S P P  H    S   S +P  H      S  S  + CP       H V +   S
Sbjct: 57  STLSSSAPRPHQHRVLISTLSSSAPCPHQHPVLISTASSSAPCPHQ-----HRVLISTVS 111

Query: 186 NNAPRPLQSP 215
           ++APRP Q P
Sbjct: 112 SSAPRPHQHP 121

 Score = 35.0 bits (79), Expect = 1.1
 Identities = 25/82 (30%), Positives = 31/82 (37%)
 Frame = +3

Query: 6   STASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLPSSCPGHIAESGHSVRLPAAS 185
           ST S S P P  H    S   S +P  H         S  + CP       H V +  AS
Sbjct: 226 STLSSSAPRPHQHPVLISTASSSAPCPHQHRVLIGTASSSAPCPHQ-----HRVLISTAS 280

Query: 186 NNAPRPLQSPKSDALPPQFPQH 251
           ++AP P Q      L    P+H
Sbjct: 281 SSAPCPHQHRVISTLSSSAPRH 302

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 23/68 (33%), Positives = 28/68 (40%)
 Frame = +3

Query: 6   STASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLPSSCPGHIAESGHSVRLPAAS 185
           ST S S P P  H    S   S +P  H      S  S  + CP       H V +   S
Sbjct: 125 STLSSSAPRPHQHPVLISTASSSAPRPHQHPVLISTLSSSAPCPHQ-----HRVLISTLS 179

Query: 186 NNAPRPLQ 209
           ++APRP Q
Sbjct: 180 SSAPRPHQ 187

 Score = 32.3 bits (72), Expect = 7.1
 Identities = 25/68 (36%), Positives = 29/68 (41%)
 Frame = +3

Query: 6   STASPSTPPPL*HSFTESVRQSGSPVAHASLSCASCTSLPSSCPGHIAESGHSVRLPAAS 185
           STAS S P P  H    S   S +P  H      S  S P  CP       H V +   S
Sbjct: 309 STASSSAPRP--HQHRISTASSSAPCPHQHPVLISTASAP--CPHQ-----HPVLISTLS 359

Query: 186 NNAPRPLQ 209
           ++APRP Q
Sbjct: 360 SSAPRPHQ 367

>ref|ZP_00129163.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
           [Desulfovibrio desulfuricans G20]
          Length = 185

 Score = 35.4 bits (80), Expect = 0.84
 Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
 Frame = +1

Query: 445 LFQPGSSGMAHYKLASHAHTQYRVASQHAQRLQSCLQW--PTVLLKWPDVSASPAKSPSP 618
           LF P      +  L  H   QY+V + +A + ++ ++W  P + + WPD+ A  +   + 
Sbjct: 111 LFIPRGFAHGYMTLEPHTEFQYKVDAYYAPQAEAGIRWDDPDLDIPWPDMEAVLSPKDAE 170

Query: 619 LPPEC 633
           LP  C
Sbjct: 171 LPRLC 175



EST assemble image


clone accession position
1 CL57e11_r AV396273 1 532
2 HC091b08_r AV638814 350 695




Chlamydomonas reinhardtii
Kazusa DNA Research Institute