Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000705A_C01 KCC000705A_c01
(569 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA41695.1| heavy neurofilament subunit 44 0.002
pir||S02003 neurofilament triplet H protein - rat (fragment) gi|... 44 0.002
sp|P16884|NFH_RAT Neurofilament triplet H protein (200 kDa neuro... 44 0.002
dbj|BAC31507.1| unnamed protein product [Mus musculus] 42 0.005
ref|XP_131714.1| heterochromatin protein 1, binding protein 3 [M... 42 0.005
>gb|AAA41695.1| heavy neurofilament subunit
Length = 795
Score = 43.5 bits (101), Expect = 0.002
Identities = 35/130 (26%), Positives = 54/130 (40%), Gaps = 3/130 (2%)
Frame = +2
Query: 188 RLATKRAHFNVHFSMTQQSVEKSGKSATNGLQIVDEFQDDDEYEEEEDA---GGDERPGE 358
++ + H V + VEKS K + +E Q +E EEED G +E E
Sbjct: 159 KIPSTSTHIKVKSEEKIKVVEKSEKETVIVEEQTEEIQVTEEVTEEEDKEAQGEEEEEAE 218
Query: 359 ENGPDSAKAGKLAGWFKSLFKKDKAGKPSSKRSSASSSRNASTTQHAPQKAPSPAPSKPL 538
E G ++A A S K+ K+ +S A + A A K+P+ S +
Sbjct: 219 EGGEEAATTSPPAEEAASPEKETKSPVKEEAKSPAEAKSPAEAKSPAEAKSPAEVKSPAV 278
Query: 539 SPSGDALKSP 568
+ S +KSP
Sbjct: 279 AKSPAEVKSP 288
>pir||S02003 neurofilament triplet H protein - rat (fragment)
gi|57829|emb|CAA32038.1| heavy neurofilament polypeptide
(854 AA) [Rattus sp.] gi|205682|gb|AAA41693.1| heavy
neurofilament polypeptide gi|226233|prf||1502228A heavy
neurofilament protein NF H
Length = 854
Score = 43.5 bits (101), Expect = 0.002
Identities = 35/130 (26%), Positives = 54/130 (40%), Gaps = 3/130 (2%)
Frame = +2
Query: 188 RLATKRAHFNVHFSMTQQSVEKSGKSATNGLQIVDEFQDDDEYEEEEDA---GGDERPGE 358
++ + H V + VEKS K + +E Q +E EEED G +E E
Sbjct: 195 KIPSMSTHIKVKSEEKIKVVEKSEKETVIVEEQTEEIQVTEEVTEEEDKEAQGEEEEEAE 254
Query: 359 ENGPDSAKAGKLAGWFKSLFKKDKAGKPSSKRSSASSSRNASTTQHAPQKAPSPAPSKPL 538
E G ++A A S K+ K+ +S A + A A K+P+ S +
Sbjct: 255 EGGEEAATTSPPAEEAASPEKETKSPVKEEAKSPAEAKSPAEAKSPAEAKSPAEVKSPAV 314
Query: 539 SPSGDALKSP 568
+ S +KSP
Sbjct: 315 AKSPAEVKSP 324
>sp|P16884|NFH_RAT Neurofilament triplet H protein (200 kDa neurofilament protein)
(Neurofilament heavy polypeptide) (NF-H)
Length = 831
Score = 43.5 bits (101), Expect = 0.002
Identities = 35/130 (26%), Positives = 54/130 (40%), Gaps = 3/130 (2%)
Frame = +2
Query: 188 RLATKRAHFNVHFSMTQQSVEKSGKSATNGLQIVDEFQDDDEYEEEEDA---GGDERPGE 358
++ + H V + VEKS K + +E Q +E EEED G +E E
Sbjct: 195 KIPSMSTHIKVKSEEKIKVVEKSEKETVIVEEQTEEIQVTEEVTEEEDKEAQGEEEEEAE 254
Query: 359 ENGPDSAKAGKLAGWFKSLFKKDKAGKPSSKRSSASSSRNASTTQHAPQKAPSPAPSKPL 538
E G ++A A S K+ K+ +S A + A A K+P+ S +
Sbjct: 255 EGGEEAATTSPPAEEAASPEKETKSPVKEEAKSPAEAKSPAEAKSPAEAKSPAEVKSPAV 314
Query: 539 SPSGDALKSP 568
+ S +KSP
Sbjct: 315 AKSPAEVKSP 324
>dbj|BAC31507.1| unnamed protein product [Mus musculus]
Length = 516
Score = 42.4 bits (98), Expect = 0.005
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +2
Query: 290 DEFQDDDEYEEEEDAGGDERPGEENGPDSAKAGKLAGWFKSLFKKDKAGKPSSKRSSASS 469
DE +DDD+ E ED+ DE P + K G K+ K + KP+ K +A
Sbjct: 395 DEDEDDDDDESSEDSE-DEEPPPKRSLQKKTPAKSQG--KTASMKQRGSKPARKVPAAQR 451
Query: 470 SRNASTTQHAPQKAPSPA------PSKPLSPSGDALKSP 568
+ + AP KA +PA PS PSG + + P
Sbjct: 452 GKVRPLPKKAPPKAKTPARKARPSPSVIKKPSGSSSRKP 490
>ref|XP_131714.1| heterochromatin protein 1, binding protein 3 [Mus musculus]
Length = 554
Score = 42.4 bits (98), Expect = 0.005
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +2
Query: 290 DEFQDDDEYEEEEDAGGDERPGEENGPDSAKAGKLAGWFKSLFKKDKAGKPSSKRSSASS 469
DE +DDD+ E ED+ DE P + K G K+ K + KP+ K +A
Sbjct: 433 DEDEDDDDDESSEDSE-DEEPPPKRSLQKKTPAKSQG--KTASMKQRGSKPARKVPAAQR 489
Query: 470 SRNASTTQHAPQKAPSPA------PSKPLSPSGDALKSP 568
+ + AP KA +PA PS PSG + + P
Sbjct: 490 GKVRPLPKKAPPKAKTPARKARPSPSVIKKPSGSSSRKP 528
