KCC000701A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000701A_C01 KCC000701A_c01
gcacgagagcaccactaccggtcgcacgtatacaaatactcctcacttggagatgaggcg
ctggcaaagcagctggctgcCGATGCAGCCTGGGCTGCCGAGCTTATTGAGAAGCTCACG
CACATTGGGGGCGACGAGTCCATGAAGCCCGGCATCGTAAATGCCTGCGAGGGTCTTGCG
TTTGTGAGGGCCAGCAAAGGTGGCCTTGGTGTCACCATGGCTCGTGGGAACGGTTTCGTA
ATCAGGAAGCTGGACCAGGACCGCACCGGCAACTCGCGCTGGTCGGCGCCCGTGTACTTC
TTCGTGTCGCAAATGGGCATCGGACTGTCGGCGGGCTACGAGACGTCGGAGTCGGTGCTC
GCGCTCATGGCGACGTCCTCGGTGATGCACTTCGCGGTCGACCACTCCGTGATGGGCACC
GACCTGGGCCTCATGTCCACTGAGGGGGCCATGACCGGCGTGCCCGCTGGCACCTTCGGG
CGCAACTCGCACATGGACGTGCAGGCTGACAACACCAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000701A_C01 KCC000701A_c01
         (520 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_343046.1| similar to Sh3yl1 [Rattus norvegicus]                 54  1e-06
dbj|BAB15493.1| unnamed protein product [Homo sapiens] gi|142499...    52  5e-06
gb|AAH08374.1| SH3YL1 protein [Homo sapiens]                           52  5e-06
ref|NP_593048.1| conserved hypothetical SH3 domain protein [Schi...    52  6e-06
ref|NP_038737.1| Sh3 domain YSC-like 1 [Mus musculus] gi|1944389...    51  1e-05

>ref|XP_343046.1| similar to Sh3yl1 [Rattus norvegicus]
          Length = 423

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 44/165 (26%), Positives = 75/165 (44%), Gaps = 5/165 (3%)
 Frame = +1

Query: 7   EHHYRSHVYKYSSLG-DEALAKQLAADAAWAAELIEKLTHI----GGDESMKPGIVNACE 171
           +H Y  +V  + +L  +  +   L ++A  AA+++ + T I    G D+ +   ++   +
Sbjct: 59  KHIYTGNVNMFFTLSVNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAK 118

Query: 172 GLAFVRASKGGLGVTMARGNGFVIRKLDQDRTGNSRWSAPVYFFVSQMGIGLSAGYETSE 351
           GLA +   K G  VT   G+G V+ +L      + +WSAP    ++ +G G   G E S+
Sbjct: 119 GLAVLSVIKAGFLVTARGGSGIVLARLP-----DGKWSAPSAIGIAGLGGGFEIGIEVSD 173

Query: 352 SVLALMATSSVMHFAVDHSVMGTDLGLMSTEGAMTGVPAGTFGRN 486
            V+ L    +V  FA   ++         T G    V  G  GRN
Sbjct: 174 LVIILNYDRAVEAFAKGGNL---------TLGGNFTVAVGPLGRN 209

>dbj|BAB15493.1| unnamed protein product [Homo sapiens] gi|14249977|gb|AAH08375.1|
           SH3YL1 protein [Homo sapiens]
          Length = 323

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 40/146 (27%), Positives = 66/146 (44%), Gaps = 4/146 (2%)
 Frame = +1

Query: 61  LAKQLAADAAWAAELIEKLTHI----GGDESMKPGIVNACEGLAFVRASKGGLGVTMARG 228
           +   L ++A  AA+++ + T I    G D+ +   ++   +GLA +   K G  VT   G
Sbjct: 5   IPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVTARGG 64

Query: 229 NGFVIRKLDQDRTGNSRWSAPVYFFVSQMGIGLSAGYETSESVLALMATSSVMHFAVDHS 408
           +G V+ +L      + +WSAP    ++ +G G   G E S+ V+ L    +V  FA   +
Sbjct: 65  SGIVVARLP-----DGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGN 119

Query: 409 VMGTDLGLMSTEGAMTGVPAGTFGRN 486
           +         T G    V  G  GRN
Sbjct: 120 L---------TLGGNLTVAVGPLGRN 136

>gb|AAH08374.1| SH3YL1 protein [Homo sapiens]
          Length = 342

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 40/146 (27%), Positives = 66/146 (44%), Gaps = 4/146 (2%)
 Frame = +1

Query: 61  LAKQLAADAAWAAELIEKLTHI----GGDESMKPGIVNACEGLAFVRASKGGLGVTMARG 228
           +   L ++A  AA+++ + T I    G D+ +   ++   +GLA +   K G  VT   G
Sbjct: 5   IPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVTARGG 64

Query: 229 NGFVIRKLDQDRTGNSRWSAPVYFFVSQMGIGLSAGYETSESVLALMATSSVMHFAVDHS 408
           +G V+ +L      + +WSAP    ++ +G G   G E S+ V+ L    +V  FA   +
Sbjct: 65  SGIVVARLP-----DGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGN 119

Query: 409 VMGTDLGLMSTEGAMTGVPAGTFGRN 486
           +         T G    V  G  GRN
Sbjct: 120 L---------TLGGNLTVAVGPLGRN 136

>ref|NP_593048.1| conserved hypothetical SH3 domain protein [Schizosaccharomyces
           pombe] gi|11359034|pir||T50296 conserved hypothetical
           SH3 domain protein [imported] - fission yeast
           (Schizosaccharomyces pombe) gi|6562185|emb|CAB62422.1|
           SPAPJ696.02 [Schizosaccharomyces pombe]
          Length = 430

 Score = 51.6 bits (122), Expect = 6e-06
 Identities = 33/122 (27%), Positives = 55/122 (45%)
 Frame = +1

Query: 124 IGGDESMKPGIVNACEGLAFVRASKGGLGVTMARGNGFVIRKLDQDRTGNSRWSAPVYFF 303
           +G  E + P ++   +GL  +   K G   +   G+G ++ +LD     +  WSAP    
Sbjct: 32  LGAQEVIPPSVLTNAKGLVIMTVLKAGFLFSGRIGSGLIVARLD-----DGTWSAPSAVM 86

Query: 304 VSQMGIGLSAGYETSESVLALMATSSVMHFAVDHSVMGTDLGLMSTEGAMTGVPAGTFGR 483
              MG+G   G E ++ V+ L + ++V  FA   S+         T G    + AG  GR
Sbjct: 87  TGGMGVGAQIGSELTDFVIILNSKAAVQTFARLGSI---------TLGGNLSIAAGPLGR 137

Query: 484 NS 489
           N+
Sbjct: 138 NA 139

>ref|NP_038737.1| Sh3 domain YSC-like 1 [Mus musculus] gi|1944389|dbj|BAA19679.1|
           Sh3yl1 [Mus musculus] gi|16307499|gb|AAH10296.1| Sh3
           domain YSC-like 1 [Mus musculus]
          Length = 340

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 40/146 (27%), Positives = 66/146 (44%), Gaps = 4/146 (2%)
 Frame = +1

Query: 61  LAKQLAADAAWAAELIEKLTHI----GGDESMKPGIVNACEGLAFVRASKGGLGVTMARG 228
           +   L ++A  AA+++ + T I    G D+ +   ++   +GLA +   K G  VT   G
Sbjct: 5   IPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAVLSVIKAGFLVTARGG 64

Query: 229 NGFVIRKLDQDRTGNSRWSAPVYFFVSQMGIGLSAGYETSESVLALMATSSVMHFAVDHS 408
           +G V+ +L      + +WSAP    ++ +G G   G E S+ V+ L    +V  FA   +
Sbjct: 65  SGIVLARLP-----DGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGN 119

Query: 409 VMGTDLGLMSTEGAMTGVPAGTFGRN 486
           +         T G    V  G  GRN
Sbjct: 120 L---------TLGGNFTVAVGPLGRN 136



EST assemble image


clone accession position
1 CM061c01_r AV390638 1 586
2 CL56a07_r AV396103 111 520




Chlamydomonas reinhardtii
Kazusa DNA Research Institute