Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000697A_C01 KCC000697A_c01
(573 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001853.2| cytochrome c oxidase subunit Vb precursor; cyto... 43 0.004
gb|AAP36615.1| Homo sapiens cytochrome c oxidase subunit Vb [syn... 43 0.004
ref|XP_300853.1| hypothetical protein XP_300853 [Homo sapiens] 42 0.006
pir||OTHU5B cytochrome-c oxidase (EC 1.9.3.1) chain Vb precursor... 42 0.008
sp|P00428|COXB_BOVIN Cytochrome c oxidase polypeptide VB (VI) gi... 41 0.010
>ref|NP_001853.2| cytochrome c oxidase subunit Vb precursor; cytochrome c oxidase
polypeptide VB, mitochondrial precursor [Homo sapiens]
gi|20141332|sp|P10606|COXB_HUMAN Cytochrome c oxidase
polypeptide Vb, mitochondrial precursor
gi|13623259|gb|AAH06229.1|AAH06229 cytochrome c oxidase
subunit Vb [Homo sapiens] gi|30582323|gb|AAP35388.1|
cytochrome c oxidase subunit Vb [Homo sapiens]
Length = 129
Score = 42.7 bits (99), Expect = 0.004
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +1
Query: 400 GTEEDPIIVPSLEAERIIGVTDPEDETLVVWGILKDGEPPR 522
GT EDP +VPS+ +RI+G ED T VVW L GE R
Sbjct: 72 GTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQR 112
>gb|AAP36615.1| Homo sapiens cytochrome c oxidase subunit Vb [synthetic construct]
Length = 130
Score = 42.7 bits (99), Expect = 0.004
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +1
Query: 400 GTEEDPIIVPSLEAERIIGVTDPEDETLVVWGILKDGEPPR 522
GT EDP +VPS+ +RI+G ED T VVW L GE R
Sbjct: 72 GTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQR 112
>ref|XP_300853.1| hypothetical protein XP_300853 [Homo sapiens]
Length = 252
Score = 42.0 bits (97), Expect = 0.006
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Frame = -2
Query: 566 STCLST*NSPFSTNWRGGS----PSLRMPQTTRVSSSGSVTPMMRSASSEGTMMGSSSVP 399
S+ S+ +SP S+N S PS ++ SS S +P S+SS + SSS P
Sbjct: 94 SSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSP 153
Query: 398 NLSSYIHASCHSSLSPSGRYFRGGSADRAEGLASAGAALACCQAGMEAARLGSELLANDA 219
+ SS +S SS S S G S + S+ ++ + + R S ++ +
Sbjct: 154 SSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSS 213
Query: 218 HSRQLSGNARRCGRPATATGASSPRKQARQSAQPVHPSDFP 96
S S + ++ A+ R+ QS Q H + FP
Sbjct: 214 TSSPSSSSPSSSSPSSSCPSAALGRRP--QSPQSSHCAPFP 252
Score = 35.8 bits (81), Expect = 0.43
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 1/151 (0%)
Frame = -2
Query: 566 STCLST*NSPFSTNWRGGSPSLRMPQTTRVSSSGSVTPMMRSASSEGTMMGSSSVPNLSS 387
S+ ST + S++ SPS + SSS S +P S+SS + SSS P+ SS
Sbjct: 84 SSSSSTSSPSSSSSSSSSSPS----SSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 139
Query: 386 YIHASCHSSLSPSGRYFRGGSADRAEGLASAGAALACCQAGMEAARLGSELLANDAHSRQ 207
+S SS S S S+ + +S ++ ++ S ++ + S
Sbjct: 140 ---SSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSS 196
Query: 206 LSGNARRCGRPATATGA-SSPRKQARQSAQP 117
S + R P++++ + SSP + S+ P
Sbjct: 197 SSSPSPRSSSPSSSSSSTSSPSSSSPSSSSP 227
Score = 33.5 bits (75), Expect = 2.1
Identities = 32/147 (21%), Positives = 62/147 (41%)
Frame = -2
Query: 545 NSPFSTNWRGGSPSLRMPQTTRVSSSGSVTPMMRSASSEGTMMGSSSVPNLSSYIHASCH 366
+S S++ SPS P ++ SSS S + S SS + SSS P+ S+ +S
Sbjct: 57 SSSSSSSSPSSSPSSSSPSSSHSSSSPSSSSSTSSPSSSSS--SSSSSPSSSNSSSSSSS 114
Query: 365 SSLSPSGRYFRGGSADRAEGLASAGAALACCQAGMEAARLGSELLANDAHSRQLSGNARR 186
SS S S + + +S+ ++ + + ++ S ++ + S S +
Sbjct: 115 SSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSS 174
Query: 185 CGRPATATGASSPRKQARQSAQPVHPS 105
G +++ +S + S+ PS
Sbjct: 175 SGSSPSSSNSSPSSSSSSPSSSSSSPS 201
Score = 32.3 bits (72), Expect = 4.7
Identities = 32/144 (22%), Positives = 61/144 (42%)
Frame = -2
Query: 554 ST*NSPFSTNWRGGSPSLRMPQTTRVSSSGSVTPMMRSASSEGTMMGSSSVPNLSSYIHA 375
S+ +S S++ S S P ++ SSS S + S+SS + SSS + SS +
Sbjct: 72 SSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSS 131
Query: 374 SCHSSLSPSGRYFRGGSADRAEGLASAGAALACCQAGMEAARLGSELLANDAHSRQLSGN 195
S S S S S+ + +S ++ + + + S + + S S
Sbjct: 132 SSSPSSSSSS-----SSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSP 186
Query: 194 ARRCGRPATATGASSPRKQARQSA 123
+ P++++ + SPR + S+
Sbjct: 187 SSSSSSPSSSSSSPSPRSSSPSSS 210
>pir||OTHU5B cytochrome-c oxidase (EC 1.9.3.1) chain Vb precursor - human
gi|180937|gb|AAA52060.1| COX5B gi|180941|gb|AAA52061.1|
cytochrome c oxidase precursor (EC 1.9.3.1)
Length = 129
Score = 41.6 bits (96), Expect = 0.008
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 400 GTEEDPIIVPSLEAERIIGVTDPEDETLVVWGILKDGEPPR 522
GT EDP +VPS+ +RI+G ED T VVW L G+ R
Sbjct: 72 GTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGQAQR 112
>sp|P00428|COXB_BOVIN Cytochrome c oxidase polypeptide VB (VI) gi|66279|pir||OGBO6A
cytochrome-c oxidase (EC 1.9.3.1) chain Vb [validated] -
bovine gi|1942991|pdb|1OCC|F Chain F, Structure Of
Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State gi|1943004|pdb|1OCC|S Chain S, Structure Of Bovine
Heart Cytochrome C Oxidase At The Fully Oxidized State
gi|4389084|pdb|2OCC|F Chain F, Bovine Heart Cytochrome C
Oxidase At The Fully Oxidized State
gi|4389097|pdb|2OCC|S Chain S, Bovine Heart Cytochrome C
Oxidase At The Fully Oxidized State
gi|5822143|pdb|1OCO|F Chain F, Bovine Heart Cytochrome C
Oxidase In Carbon Monoxide-Bound State
gi|5822156|pdb|1OCO|S Chain S, Bovine Heart Cytochrome C
Oxidase In Carbon Monoxide-Bound State
gi|5822169|pdb|1OCR|F Chain F, Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State gi|5822182|pdb|1OCR|S
Chain S, Bovine Heart Cytochrome C Oxidase In The Fully
Reduced State gi|5822195|pdb|1OCZ|F Chain F, Bovine
Heart Cytochrome C Oxidase In Azide-Bound State
gi|5822208|pdb|1OCZ|S Chain S, Bovine Heart Cytochrome C
Oxidase In Azide-Bound State
Length = 98
Score = 41.2 bits (95), Expect = 0.010
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 400 GTEEDPIIVPSLEAERIIGVTDPEDETLVVWGILKDGEPPR 522
GT+EDP +VPS+ +RI+G ED + V+W L GE R
Sbjct: 41 GTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQR 81
