KCC000695A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000695A_C01 KCC000695A_c01
gtcttcatgaagccctctcgcagcgcccaatcccgacgcgttccggccgaaggatttctc
ggagtcAACTCGCATGACTTCGTTATCACGCCTGTAGTTTATTATGGTACTCGAGTTGTT
TTCATATTACCGAGCACAGTAATGCGGCGAAAAGTCTTCAAGTTGCCGACAGAAGCTTTC
CTAAATCATCAAGTTAGGCAACCTTAGATATGGGGGTCGGCGATGACCGCGAAAAGCTAC
TGGCGCAGCTAATCGAGGAGCATGCGCCTGTTCCGACAGCGGAGGATGTGCTGCGGCAAG
CCCGCATCGCGCACGGCTCCACGATGCACTTCCACATCGGCAGCATGAGGGTGCCGCAGA
CAAAGCAGTCGCTGGTTCGACTGCAGTACACCACGGGGGGCGTGGTTTCCACTGCTCAGT
CCACGGCGGCGGACCGGGCAGCCGCAGGTGCCAAGCAGGCCAAAGCGGCGGTGGCGGCAG
AGGCGGCGGCGCACAACGGCACAGCGGGTAGTGACAGCCCAAGCACGGCGACAGAGGATG
CATACAACCAGGATGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000695A_C01 KCC000695A_c01
         (557 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_005351.2| v-maf musculoaponeurotic fibrosarcoma oncogene ...    48  8e-05
gb|AAC27037.1| short form transcription factor C-MAF [Homo sapiens]    48  8e-05
ref|NP_501166.1| GRound-Like (grl-4) [Caenorhabditis elegans] gi...    47  2e-04
gb|AAA81484.2| C. elegans GRL-4 protein [Caenorhabditis elegans]       47  2e-04
dbj|BAC03429.1| FLJ00369 protein [Homo sapiens]                        45  5e-04

>ref|NP_005351.2| v-maf musculoaponeurotic fibrosarcoma oncogene homolog; Avian
           musculoaponeurotic fibrosarcoma (MAF) protooncogene;
           v-maf musculoaponeurotic fibrosarcoma (avian) oncogene
           homolog [Homo sapiens] gi|21759253|sp|O75444|MAF_HUMAN
           Transcription factor Maf (Proto-oncogene c-maf)
           gi|3335150|gb|AAC27038.1| long form transcription factor
           C-MAF [Homo sapiens]
          Length = 403

 Score = 48.1 bits (113), Expect = 8e-05
 Identities = 37/94 (39%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = +2

Query: 260 ACACSDSGGCAAASPH-RARLHDALPHRQHEGAADKAVAGSTAVHHGGRGFHCSVHGGGP 436
           A A + SG    A PH     H A  H  H  A     AGS A   GG G      GGGP
Sbjct: 169 AAAAAQSG----AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAG---GAGGGGP 221

Query: 437 GSRRCQAGQSGGGGRGGGAQRHSG**QPKHGDRG 538
            S     G  GGGG GGGA    G   P H   G
Sbjct: 222 ASAG-GGGGGGGGGGGGGAAGAGGALHPHHAAGG 254

>gb|AAC27037.1| short form transcription factor C-MAF [Homo sapiens]
          Length = 373

 Score = 48.1 bits (113), Expect = 8e-05
 Identities = 37/94 (39%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = +2

Query: 260 ACACSDSGGCAAASPH-RARLHDALPHRQHEGAADKAVAGSTAVHHGGRGFHCSVHGGGP 436
           A A + SG    A PH     H A  H  H  A     AGS A   GG G      GGGP
Sbjct: 169 AAAAAQSG----AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAG---GAGGGGP 221

Query: 437 GSRRCQAGQSGGGGRGGGAQRHSG**QPKHGDRG 538
            S     G  GGGG GGGA    G   P H   G
Sbjct: 222 ASAG-GGGGGGGGGGGGGAAGAGGALHPHHAAGG 254

>ref|NP_501166.1| GRound-Like (grl-4) [Caenorhabditis elegans] gi|7503243|pir||T16342
           hypothetical protein F42C5.7 - Caenorhabditis elegans
          Length = 250

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
 Frame = -3

Query: 552 PGCMHPLSPCLGCHYPLCRCAPPPL------PPPPLWPAWHLRLPGPPPWTEQWKPRPPW 391
           P C  P  P   C  P   C PPP+      PPPP+ P      P PPP      P PP 
Sbjct: 68  PPCPPPPPPM--CAPPPLPCPPPPICPPQFCPPPPMCPP-----PPPPPPPPMCPPPPPP 120

Query: 390 CTAVEPATALSAAP------------SCCRCGSASWSRAR 307
             +  P  + + AP             CCRCGS     AR
Sbjct: 121 MPSYSPCQSYAPAPVFNQYAMQPANDCCCRCGSPCRFMAR 160

>gb|AAA81484.2| C. elegans GRL-4 protein [Caenorhabditis elegans]
          Length = 210

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
 Frame = -3

Query: 552 PGCMHPLSPCLGCHYPLCRCAPPPL------PPPPLWPAWHLRLPGPPPWTEQWKPRPPW 391
           P C  P  P   C  P   C PPP+      PPPP+ P      P PPP      P PP 
Sbjct: 28  PPCPPPPPPM--CAPPPLPCPPPPICPPQFCPPPPMCPP-----PPPPPPPPMCPPPPPP 80

Query: 390 CTAVEPATALSAAP------------SCCRCGSASWSRAR 307
             +  P  + + AP             CCRCGS     AR
Sbjct: 81  MPSYSPCQSYAPAPVFNQYAMQPANDCCCRCGSPCRFMAR 120

>dbj|BAC03429.1| FLJ00369 protein [Homo sapiens]
          Length = 700

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 44/134 (32%), Positives = 51/134 (37%), Gaps = 13/134 (9%)
 Frame = -3

Query: 552 PGCMHPLSPCLGCHYPLCRCAPPPLPPPP-LWPA-WHLRLPGPPPWTEQWKPRPPWCTAV 379
           P   H  SP      P     P PLPP P L PA W   L  PP  +  W P PP+    
Sbjct: 569 PATFHFFSPSS----PFSFKPPCPLPPTPRLAPASWCPSLNPPPLCSVPWGPCPPYSWGA 624

Query: 378 EPATALSAAPSCCRC------GSASWSRARCGLAAAHPPLSEQAHAPR-----LAAPVAF 232
             A    + PS CRC      G+  W R   G     PPL+     PR     +  P   
Sbjct: 625 GSA----SCPSLCRCFGDPLVGAGRWVRFHLG-----PPLTLCPSLPRRWKRWVPGPWVG 675

Query: 231 RGHRRPPYLRLPNL 190
            G   PP+L  P L
Sbjct: 676 EGLAPPPFLPAPPL 689



EST assemble image


clone accession position
1 HCL052d12_r AV642473 1 478
2 CL55f03_r AV396036 137 571




Chlamydomonas reinhardtii
Kazusa DNA Research Institute