KCC000645A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000645A_C01 KCC000645A_c01
CACAGGTGGACGTAGGCCCTACCATACGGACTGCAACTCAACGCCTGAGAATCGTCAAAT
AAATTTCGCTGATTTCACACAACGCCTCCACTTGAGAACCGGCTAGCCCGCTCGTTCTAC
TGTGTGCTCGCAACCATGAGAAGCGCTCTACTACCCCGGGCCTCGCGTCGGCCTGCAACG
CTCCGTGGCCCCGGTCGAGGAGACCGGCCGTCGCTCAGTGCTGCTTCGGCCCGCGCAACC
TCTCCCTGGGCTCCAAGTGCCCCTACCGCGTGCTTGGCCTCACGCCTGACGAGAGTGTGG
ACGACGAGAGCATCAAGGTGGCCTTCAGGCGCAAAGCCAAGCAGATGCACCCTGACGTCT
CTGACGACCCTCTCGCGGCACTCTCTTTCATGGAGGTCCAGCACGCGTACCAGACGCTGC
TCGACCCCGAGAAGCGCGCCAAGTACGACAAGTCGCTGCAGGCGCCCCGCGCCAACAGCC
AGGTGCTGTCGTACCTCAACGCCCGCTCCGCGGCGCGCCACGGCGTGCCGCCCAGCCGCG
TGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000645A_C01 KCC000645A_c01
         (544 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO18454.1| putative DnaJ homolog subfamily protein [Oryza sa...    72  6e-12
ref|NP_276412.1| DnaJ protein [Methanothermobacter thermautotrop...    67  1e-10
ref|NP_758284.1| heat shock protein DnaJ [Mycoplasma penetrans] ...    64  1e-09
ref|ZP_00017267.1| hypothetical protein [Chloroflexus aurantiacus]     64  2e-09
ref|NP_540918.1| CHAPERONE PROTEIN DNAJ [Brucella melitensis] gi...    63  2e-09

>gb|AAO18454.1| putative DnaJ homolog subfamily protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 268

 Score = 71.6 bits (174), Expect = 6e-12
 Identities = 48/116 (41%), Positives = 63/116 (53%)
 Frame = +3

Query: 99  PASPLVLLCARNHEKRSTTPGLASACNAPWPRSRRPAVAQCCFGPRNLSLGSKCPYRVLG 278
           P SPLVL    +     +T  L+S   AP PR RR A  +   G      G   PY VLG
Sbjct: 26  PPSPLVLRAVASSRDGPSTR-LSSPAPAP-PRRRRRASVRARAGAGRGGRGES-PYDVLG 82

Query: 279 LTPDESVDDESIKVAFRRKAKQMHPDVSDDPLAALSFMEVQHAYQTLLDPEKRAKY 446
           + P  S   E IK A+RR A + HPDV+ +P A   F+ ++HAY TL++ E R+KY
Sbjct: 83  VPP--SAPPEEIKRAYRRLALKFHPDVNKEPNAQEKFLRIKHAYNTLMNSESRSKY 136

>ref|NP_276412.1| DnaJ protein [Methanothermobacter thermautotrophicus]
           gi|3122001|sp|O27352|DNAJ_METTH Chaperone protein dnaJ
           gi|7441913|pir||H69038 heat shock protein dnaJ -
           Methanobacterium thermoautotrophicum (strain Delta H)
           gi|2622399|gb|AAB85773.1| DnaJ protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 376

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 33/63 (52%), Positives = 42/63 (66%)
 Frame = +3

Query: 264 YRVLGLTPDESVDDESIKVAFRRKAKQMHPDVSDDPLAALSFMEVQHAYQTLLDPEKRAK 443
           Y +LG+  D   D + IK A+RR A++ HPDVSDDP AA  F E+  AY  L D EKRA+
Sbjct: 7   YEILGV--DRGADKKEIKKAYRRLARKYHPDVSDDPDAAEKFKEISEAYAVLSDDEKRAR 64

Query: 444 YDK 452
           YD+
Sbjct: 65  YDR 67

>ref|NP_758284.1| heat shock protein DnaJ [Mycoplasma penetrans]
           gi|26454360|dbj|BAC44688.1| heat shock protein DnaJ
           [Mycoplasma penetrans]
          Length = 388

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 32/63 (50%), Positives = 42/63 (65%)
 Frame = +3

Query: 264 YRVLGLTPDESVDDESIKVAFRRKAKQMHPDVSDDPLAALSFMEVQHAYQTLLDPEKRAK 443
           Y VLG++ D +  D+ IK AFR+KA Q HPD + +P A   F EV  AY+ L DP+KRA 
Sbjct: 8   YEVLGVSKDAT--DDQIKSAFRKKAMQYHPDRNKEPDAEEKFKEVNQAYEVLSDPDKRAN 65

Query: 444 YDK 452
           YD+
Sbjct: 66  YDR 68

>ref|ZP_00017267.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 308

 Score = 63.5 bits (153), Expect = 2e-09
 Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
 Frame = +3

Query: 264 YRVLGLTPDESVDDESIKVAFRRKAKQMHPDVSD-DPLAALSFMEVQHAYQTLLDPEKRA 440
           Y +LGL+PD   D+++IK A+R+ A+Q HPDV+  D  A   F E+  AYQ L DPE+R 
Sbjct: 7   YAILGLSPD--ADEQAIKQAYRKLARQYHPDVNPGDKKAEERFKEINEAYQALSDPERRR 64

Query: 441 KYDK 452
           KYD+
Sbjct: 65  KYDE 68

>ref|NP_540918.1| CHAPERONE PROTEIN DNAJ [Brucella melitensis]
           gi|23502974|ref|NP_699101.1| chaperone protein DnaJ
           [Brucella suis 1330] gi|25296040|pir||AC3502 chaperone
           protein dnaJ [imported] - Brucella melitensis  (strain
           16M) gi|17984054|gb|AAL53182.1| CHAPERONE PROTEIN DNAJ
           [Brucella melitensis 16M]
           gi|23349012|gb|AAN31016.1|AE014500_1 chaperone protein
           DnaJ [Brucella suis 1330]
          Length = 377

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
 Frame = +3

Query: 264 YRVLGLTPDESVDDESIKVAFRRKAKQMHPDVS-DDPLAALSFMEVQHAYQTLLDPEKRA 440
           Y  LG+T   + DD+++K AFR+ A Q HPD + DDP A   F E+  AY+TL DP+KRA
Sbjct: 6   YEALGVT--RTADDKTLKAAFRKLAMQYHPDRNPDDPEAERKFKEIGEAYETLKDPQKRA 63

Query: 441 KYDK 452
            YD+
Sbjct: 64  AYDR 67



EST assemble image


clone accession position
1 HCL056b01_r AV642688 1 601
2 HCL080c09_r AV644019 10 584
3 LCL045d06_r AV628669 92 550
4 HCL044b11_r AV642028 92 321
5 HCL093g10_r AV644789 93 474
6 HCL003h12_r AV639733 96 401
7 HCL074c03_r AV643690 96 302
8 HCL033f10_r AV641443 98 497
9 HCL067a09_r AV643290 99 492
10 CL68g07_r AV396927 100 615
11 HCL022d07_r AV640787 102 491
12 CL51e09_r AV395919 104 526
13 MXL012c10_r BP093706 119 456
14 HCL079a01_r AV643948 137 592
15 HCL070f06_r AV643495 182 647
16 LCL089e09_r AV631150 182 649
17 HCL055b09_r AV642638 190 592
18 HCL100h01_r AV645303 205 542




Chlamydomonas reinhardtii
Kazusa DNA Research Institute