KCC000617A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000617A_C01 KCC000617A_c01
CTGTCTTGTACACATCACTCTCTACACGTCAACAATATCACCTACTTCCGTCGAAGGCGC
GTCCAGACCTCAAACGCCTGCAGACCTGAAGTTCGGCGCTTGCAAGCTCCCGTCCCGCCG
CTGCTTTCTCTTGTGCAAGCCAGCCCACCGCCGCCGTCGCCTCGAGCCTGATACACAAGT
CTACAAGCAGACAAAGATGCTGGAGGCCACCGCCACCGCCGCCTGGGGCCTGGGTGCGAG
GGAGCACAAAGGGGACAAGGCCACTTTCCTGGGCCTGAGCGTCGACCTGTCCGCGCCATA
CTACAACAACAACAACCACGCTTCGTCGGGTGATTCGTCGCCCTCGAACGGCAGCCTGGC
CGACGTGCCGGTTAACTTTGACCTCTTCTCGGGTCTGCCGCACGCGCCCCCGGCGCCCGC
GGCACCGGCCGCCCAGGCGACAGCCAACCCCCAAGCTGACTACATCGCCGCCATCCTCGC
GGCCGCTGCCGAGGCCAAGGGTGCTCAGGGCGGTGCCGCCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000617A_C01 KCC000617A_c01
         (523 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T14180 exiT protein - Mycobacterium smegmatis gi|3421058|gb...    49  3e-05
emb|CAD19511.1| UL36 protein [Pseudorabies virus]                      47  1e-04
ref|NP_060241.2| PX serine/threonine kinase [Homo sapiens] gi|31...    47  2e-04
dbj|BAA91097.1| unnamed protein product [Homo sapiens]                 47  2e-04
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    46  3e-04

>pir||T14180 exiT protein - Mycobacterium smegmatis gi|3421058|gb|AAC32046.1|
           ExiT [Mycobacterium smegmatis]
          Length = 1122

 Score = 49.3 bits (116), Expect = 3e-05
 Identities = 54/154 (35%), Positives = 65/154 (42%), Gaps = 7/154 (4%)
 Frame = -3

Query: 521 RRHRPEHPWPRQR---PRGWRRCSQLG---GWLSPGRPVPRAPGARAADPRRGQS*PARR 360
           R  RP+ P PR R   PR  RR   +G         +PV R    RA   RRG     RR
Sbjct: 278 RPERPDPPLPRLRGGPPR--RRGPPVGPQRNTRGSEKPVVRR---RARRIRRGTH--ERR 330

Query: 359 PGCRSRATNHPTKRGCCCCSMARTGRRSGPGKWPCPLCAPSHPGPRRRWRWPPASLSACR 180
           P CR       T R     S +R G+R G G+WP P   P+   PR   R  P  L   R
Sbjct: 331 PRCRR------THRSALRISASR-GQRHGAGRWPAPRPDPAERAPRTPARRTPPQLVVQR 383

Query: 179 LVYQARGDGGGGLACTR-ESSGGTGACKRRTSGL 81
                  D G    C R  S+  TG  +RRT+G+
Sbjct: 384 -------DAGNQSECHRNRSAARTGLRRRRTTGV 410

>emb|CAD19511.1| UL36 protein [Pseudorabies virus]
          Length = 3084

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 44/164 (26%), Positives = 64/164 (38%), Gaps = 3/164 (1%)
 Frame = +3

Query: 39   HLLPSKARPDLK-RLQT*SSALASSRPAAAFSCASQPTAAVASS--LIHKSTSRQRCWRP 209
            H  P K +P LK R++     +    PA A +  + P  A  +      K T + +   P
Sbjct: 2244 HSSPRKIQPSLKARIEPPPPVINPPYPATAPAPETAPPEAPQAQPPAAAKPTPQPQGPPP 2303

Query: 210  PPPPPGAWVRGSTKGTRPLSWA*ASTCPRHTTTTTTTLRRVIRRPRTAAWPTCRLTLTSS 389
            PP PP A    + K     + A A+T P+ T  T    R    + +TA  P    T  + 
Sbjct: 2304 PPQPPSAQAPPAQKPPAQPATAAATTAPKATPQTQPPTRA---QTQTAPPPPSAATAAAQ 2360

Query: 390  RVCRTRPRRPRHRPPRRQPTPKLTTSPPSSRPLPRPRVLRAVPP 521
               +    +P  +P    P P     P +   LPRP    A PP
Sbjct: 2361 VPPQPPSSQPAAKPRGAPPAPPAPPPPSAQTTLPRPAAPPAPPP 2404

 Score = 31.2 bits (69), Expect = 8.5
 Identities = 37/151 (24%), Positives = 52/151 (33%), Gaps = 12/151 (7%)
 Frame = +3

Query: 90   SSALASSRPAAAFSCASQPTAAVASSLIHKSTSRQRCWRPPPP------------PPGAW 233
            + A  + +P A  + A+  TA  A+      T  Q    PPPP            PP + 
Sbjct: 2310 AQAPPAQKPPAQPATAAATTAPKATPQTQPPTRAQTQTAPPPPSAATAAAQVPPQPPSSQ 2369

Query: 234  VRGSTKGTRPLSWA*ASTCPRHTTTTTTTLRRVIRRPRTAAWPTCRLTLTSSRVCRTRPR 413
                 +G  P     A   P   +  TT        PR AA P       S++    RP 
Sbjct: 2370 PAAKPRGAPP-----APPAPPPPSAQTTL-------PRPAAPPAP--PPPSAQTTLPRPA 2415

Query: 414  RPRHRPPRRQPTPKLTTSPPSSRPLPRPRVL 506
             P    P   PTP      PS++     R++
Sbjct: 2416 PPPPSAPAATPTPPAPGPAPSAKKSDGDRIV 2446

>ref|NP_060241.2| PX serine/threonine kinase [Homo sapiens]
           gi|31074985|gb|AAP42076.1| PX serine/threonine kinase
           [Homo sapiens]
          Length = 578

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
 Frame = +2

Query: 104 KLPSR--RCFLLCKPAHRRRRLEPDTQVYKQTKMLEATATAAWGLGAREH---------K 250
           K+P++      + K    +R +E   Q+++  ++  A +      G+ E          K
Sbjct: 410 KIPTKLKEALRIAKECIEKRLIEEQKQIHQHRRLTRAQSHH----GSEEERKKRKILARK 465

Query: 251 GDKATFLGLSVDLSAPYYNNNNHASSGDSSPSNGSLADVPVNFDLFSGLPHAPPAPAAPA 430
             K + L  S + SA Y N+NN A SG SSP     +  P +    S LP  PP P  PA
Sbjct: 466 KSKRSALENSEEHSAKYSNSNNSAGSGASSPLTSPSSPTPPSTSGISALPPPPPPPPPPA 525

Query: 431 AQATANPQADYIAAILAAAAEAKGAQGGA 517
           A     P A   A    ++    G   GA
Sbjct: 526 APL---PPASTEAPAQLSSQAVNGMSRGA 551

>dbj|BAA91097.1| unnamed protein product [Homo sapiens]
          Length = 649

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
 Frame = +2

Query: 104 KLPSR--RCFLLCKPAHRRRRLEPDTQVYKQTKMLEATATAAWGLGAREH---------K 250
           K+P++      + K    +R +E   Q+++  ++  A +      G+ E          K
Sbjct: 410 KIPTKLKEALRIAKECIEKRLIEEQKQIHQHRRLTRAQSHH----GSEEERKKRKILARK 465

Query: 251 GDKATFLGLSVDLSAPYYNNNNHASSGDSSPSNGSLADVPVNFDLFSGLPHAPPAPAAPA 430
             K + L  S + SA Y N+NN A SG SSP     +  P +    S LP  PP P  PA
Sbjct: 466 KSKRSALENSEEHSAKYSNSNNSAGSGASSPLTSPSSPTPPSTSGISALPPPPPPPPPPA 525

Query: 431 AQATANPQADYIAAILAAAAEAKGAQGGA 517
           A     P A   A    ++    G   GA
Sbjct: 526 APL---PPASTEAPAQLSSQAVNGMSRGA 551

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
            gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
            melanogaster]
          Length = 1225

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 51/173 (29%), Positives = 66/173 (37%), Gaps = 15/173 (8%)
 Frame = +3

Query: 48   PSKARPDLKRLQT*SSALASSRPAAAFSCASQPTAAVASSLIHKSTSRQRCWRPPPPPPG 227
            P+   P      T S    ++  +      S+PT     S    STSR     P      
Sbjct: 958  PTTTTPRSTTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKT 1017

Query: 228  AWVRGSTKGTRPLSWA*AS----TCPRHTTTTTTTLRRVIRRPRTAAWP-TCRLTLTSSR 392
            +    +T   R  +    S    T PR TTTTTT+ R     PR+   P T R T T+ R
Sbjct: 1018 STCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTS-RPTTTTPRSTTTPCTSRPTTTTPR 1076

Query: 393  -VCRTRPRRPRHRPPRRQPTPKLTTSPPSS--------RPLP-RPRVLRAVPP 521
                T   RP    PR   TP  TT+P +S        RP P  P+    +PP
Sbjct: 1077 STTTTTTSRPTTTTPRSTTTPCPTTTPSASPTRTTTTRRPCPCHPQPPYQIPP 1129

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 38/127 (29%), Positives = 46/127 (35%), Gaps = 8/127 (6%)
 Frame = +3

Query: 138 SQPTAAVASSLIHKSTSRQRCWRPPPPPPGAWVRGSTKGTRPLSWA*ASTCPRHTTTTTT 317
           S+PT     S    +TSR     P         R +T  T P      STC   TTT  +
Sbjct: 233 SRPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPTT--TTPRCTTTTSTCAPTTTTPRS 290

Query: 318 TLRRVIRRPRTAAWPTCRLTLTSSRVCRTRPR--------RPRHRPPRRQPTPKLTTSPP 473
           T      RP T   P C  T ++    RT PR        RP    PR   TP  T +  
Sbjct: 291 TTTTTTSRPTTTT-PRCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTTCTRR 349

Query: 474 SSRPLPR 494
            +   PR
Sbjct: 350 PTTTTPR 356

 Score = 40.4 bits (93), Expect = 0.014
 Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
 Frame = +3

Query: 129  SCASQPTAAVASSLIHKSTSRQRCWRPPPPPPGAWVRGSTKGTRPLSWA*ASTCPRHTTT 308
            +C S PT         +ST++     P    P +    ST  +RP      +T PR +TT
Sbjct: 921  TCTSGPTTTTP-----RSTTKTSTCAPTTTTPRSTTTTST--SRP-----TTTTPR-STT 967

Query: 309  TTTTLRRVIRRPRTAAWP-TCRLTLTSSR-VCRTRPRRPRHRPPR----------RQPTP 452
            TTTT R     PR+   P T R T T+ R    T   RP    PR             TP
Sbjct: 968  TTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTP 1027

Query: 453  KLTTSPPSSRP 485
            + TT+  +SRP
Sbjct: 1028 RSTTTTTTSRP 1038

 Score = 39.7 bits (91), Expect = 0.024
 Identities = 41/142 (28%), Positives = 58/142 (39%), Gaps = 23/142 (16%)
 Frame = +3

Query: 129 SCASQ-----PTAAVASSLIHKSTSRQRCWRPPPPPPGAWVRGSTKGTRPLSWA*ASTCP 293
           +C++Q     P     ++   +ST+     RP    P +    +T  +RP      +T P
Sbjct: 204 TCSTQGTQTTPCTCAQTTTTPRSTTTTSTSRPTTTTPRSTTTTTT--SRP-----TTTTP 256

Query: 294 RHTTTTTTTLRRVIRRPRTAAWPTCRLTLTSSRVCRTRPR--------RPRHRPPR---- 437
           R TTTTTT      RRP T   P C  T ++     T PR        RP    PR    
Sbjct: 257 RSTTTTTT------RRPTTTT-PRCTTTTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTT 309

Query: 438 ------RQPTPKLTTSPPSSRP 485
                  + TP+ TT+  +SRP
Sbjct: 310 TSTCSPTRTTPRSTTTTSTSRP 331

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 44/170 (25%), Positives = 67/170 (38%), Gaps = 18/170 (10%)
 Frame = +3

Query: 48   PSKARPDLKRLQT*SSALASSRPAAAFSCASQPTAAVA-SSLIHKSTSRQRCWRPPPPPP 224
            PS +RP     ++ ++  ++SRP      ++  T+  A ++   +ST+     RP    P
Sbjct: 985  PSTSRPTTTTPRS-TTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTP 1043

Query: 225  GAWVRGSTKG---------TRPLSWA*ASTCPRHTTTTTTTLRRVIRRPRTAAWP----- 362
             +    +T           T P +    +T PR TTTTTT+ R     PR+   P     
Sbjct: 1044 RSTTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTS-RPTTTTPRSTTTPCPTTT 1102

Query: 363  ---TCRLTLTSSRVCRTRPRRPRHRPPRRQPTPKLTTSPPSSRPLPRPRV 503
               +   T T+ R C   P+ P   PP     P  T   P     P P V
Sbjct: 1103 PSASPTRTTTTRRPCPCHPQPPYQIPPWSWWYPNPTYPNPVWPWQPNPVV 1152

 Score = 36.2 bits (82), Expect = 0.26
 Identities = 29/79 (36%), Positives = 36/79 (44%), Gaps = 11/79 (13%)
 Frame = +3

Query: 282  STCPRHTTTT-----TTTLRRVIRRPRTAA----WPTCRLTLTSSRVCRTRPRRPRHRPP 434
            +T PR TTTT     TTT  R   +  T A     P    T ++SR   T PR       
Sbjct: 912  TTTPRSTTTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTT 971

Query: 435  RR--QPTPKLTTSPPSSRP 485
             R    TP+ TT+P +SRP
Sbjct: 972  SRPTTTTPRSTTTPSTSRP 990



EST assemble image


clone accession position
1 LC013b05_r AV619784 1 523
2 LCL031e04_r AV627752 1 310
3 CL67d12_r AV396712 10 508
4 CL48d10_r AV395794 28 510




Chlamydomonas reinhardtii
Kazusa DNA Research Institute