KCC000611A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000611A_C01 KCC000611A_c01
aataatatatgttgtgCTTCACTTTCCATTGAATACCTTGTAAGACCCGTTGCAGTTCGC
CCCGCGTGGGCAGGGTTTGTTCAGGATGGCTCGGCTATTGGACCTCGGAAATATAGACCT
ATGGCGCAGCGAGGAGATGCAGCTGGTGCAGCTGATGATCCCGGCCGACAACGCGCATGA
TACTGTGGAGGCGCTGGGCGAAATAGGCCTGCTGCAATTTAAGGACCTGAACGTGGACAA
GTCCGCGTTCCAGCGGACCTACGCCAACCAGGTCCGGCGCTGCGATGAGATGGCCCGCAA
GCTGCGGTTCTTCAAGGAGCAGATTGAGAAGGCGCACATCCCCGTGCCCAGCCGCTCCCT
GCTGGACAAACGCGCGAGCGTGACCCTGGACGAGCTGGAGAGCCTGCTGGAGGCGGCAGA
GCGGGAGGCGGTGGAGATGAACGCCAACCACGACCGGCTACAGCGCGCCCACTCGGAGCT
TTCGGAGCTGAGCCTGCTGCTGGACTGCGCGGGCAAGTTCTTTGACTCGGCGCGGCGCGC
GGCGGTGGGCGCGGGCACTGTGGCTGGCGGCCTGGGTGCGGTGGGCAGCGCGGGCGGCGT
GGGCAGCGGGCTGGGCGGCTCGGCGGCGGACGTGAGCAGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000611A_C01 KCC000611A_c01
         (641 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK96647.1| At2g21410/F3K23.17 [Arabidopsis thaliana] gi|2170...   159  4e-38
ref|NP_179736.1| vacuolar proton-ATPase subunit -related [Arabid...   159  4e-38
pir||T06068 probable proton pump F19H22.180 - Arabidopsis thalia...   156  2e-37
ref|NP_568051.1| proton pump -related [Arabidopsis thaliana] gi|...   156  2e-37
emb|CAD27718.1| putative vacuolar ATPase subunit 100 kDa subunit...   149  4e-35

>gb|AAK96647.1| At2g21410/F3K23.17 [Arabidopsis thaliana]
           gi|21700881|gb|AAM70564.1| At2g21410/F3K23.17
           [Arabidopsis thaliana]
          Length = 821

 Score =  159 bits (401), Expect = 4e-38
 Identities = 81/144 (56%), Positives = 110/144 (76%)
 Frame = +2

Query: 113 IDLWRSEEMQLVQLMIPADNAHDTVEALGEIGLLQFKDLNVDKSAFQRTYANQVRRCDEM 292
           +DL RSE MQLVQ+++P ++AH TV  LG++GL+QFKDLN +KS FQRTYA Q++RC EM
Sbjct: 15  MDLMRSEPMQLVQVIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEM 74

Query: 293 ARKLRFFKEQIEKAHIPVPSRSLLDKRASVTLDELESLLEAAEREAVEMNANHDRLQRAH 472
           ARK+RFFKEQ+ KA   V  +  LD+   + LD++E  LE  E E VE+NAN+D+LQR++
Sbjct: 75  ARKIRFFKEQMSKA--GVTPKETLDRENDIDLDDVEVKLEELEAELVEINANNDKLQRSY 132

Query: 473 SELSELSLLLDCAGKFFDSARRAA 544
           +EL E  L+L+ AG+FF SA R+A
Sbjct: 133 NELVEYKLVLEKAGEFFASAHRSA 156

>ref|NP_179736.1| vacuolar proton-ATPase subunit -related [Arabidopsis thaliana]
           gi|25290614|pir||H84600 probable vacuolar proton-ATPase
           subunit [imported] - Arabidopsis thaliana
           gi|4567273|gb|AAD23686.1| putative vacuolar
           proton-ATPase subunit [Arabidopsis thaliana]
           gi|15983364|gb|AAL11550.1|AF424556_1 At2g21410/F3K23.17
           [Arabidopsis thaliana] gi|20466448|gb|AAM20541.1|
           putative vacuolar proton-ATPase subunit [Arabidopsis
           thaliana]
          Length = 821

 Score =  159 bits (401), Expect = 4e-38
 Identities = 81/144 (56%), Positives = 110/144 (76%)
 Frame = +2

Query: 113 IDLWRSEEMQLVQLMIPADNAHDTVEALGEIGLLQFKDLNVDKSAFQRTYANQVRRCDEM 292
           +DL RSE MQLVQ+++P ++AH TV  LG++GL+QFKDLN +KS FQRTYA Q++RC EM
Sbjct: 15  MDLMRSEPMQLVQVIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEM 74

Query: 293 ARKLRFFKEQIEKAHIPVPSRSLLDKRASVTLDELESLLEAAEREAVEMNANHDRLQRAH 472
           ARK+RFFKEQ+ KA   V  +  LD+   + LD++E  LE  E E VE+NAN+D+LQR++
Sbjct: 75  ARKIRFFKEQMSKA--GVTPKETLDRENDIDLDDVEVKLEELEAELVEINANNDKLQRSY 132

Query: 473 SELSELSLLLDCAGKFFDSARRAA 544
           +EL E  L+L+ AG+FF SA R+A
Sbjct: 133 NELVEYKLVLEKAGEFFASAHRSA 156

>pir||T06068 probable proton pump F19H22.180 - Arabidopsis thaliana
           gi|4539327|emb|CAB38828.1| putative proton pump
           [Arabidopsis thaliana] gi|7270891|emb|CAB80571.1|
           putative proton pump [Arabidopsis thaliana]
          Length = 843

 Score =  156 bits (395), Expect = 2e-37
 Identities = 79/144 (54%), Positives = 109/144 (74%)
 Frame = +2

Query: 113 IDLWRSEEMQLVQLMIPADNAHDTVEALGEIGLLQFKDLNVDKSAFQRTYANQVRRCDEM 292
           +DL RSE MQLVQL++P ++AH TV  LG++GL+QFKDLN +KS FQRTYA Q++RC EM
Sbjct: 14  MDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEM 73

Query: 293 ARKLRFFKEQIEKAHIPVPSRSLLDKRASVTLDELESLLEAAEREAVEMNANHDRLQRAH 472
           ARK+RFF++Q+ KA   VP++ +  K   + LD++E  L   E E VE+NAN+D+LQR++
Sbjct: 74  ARKIRFFRDQMSKA--GVPAKEMQGKENDIDLDDVEVKLGELEAELVEINANNDKLQRSY 131

Query: 473 SELSELSLLLDCAGKFFDSARRAA 544
           +EL E  L+L  AG+FF SA R+A
Sbjct: 132 NELMEYKLVLQKAGEFFSSAHRSA 155

>ref|NP_568051.1| proton pump -related [Arabidopsis thaliana]
           gi|16974583|gb|AAL31187.1| AT4g39080/F19H22_180
           [Arabidopsis thaliana] gi|27363224|gb|AAO11531.1|
           At4g39080/F19H22_180 [Arabidopsis thaliana]
          Length = 821

 Score =  156 bits (395), Expect = 2e-37
 Identities = 79/144 (54%), Positives = 109/144 (74%)
 Frame = +2

Query: 113 IDLWRSEEMQLVQLMIPADNAHDTVEALGEIGLLQFKDLNVDKSAFQRTYANQVRRCDEM 292
           +DL RSE MQLVQL++P ++AH TV  LG++GL+QFKDLN +KS FQRTYA Q++RC EM
Sbjct: 14  MDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEM 73

Query: 293 ARKLRFFKEQIEKAHIPVPSRSLLDKRASVTLDELESLLEAAEREAVEMNANHDRLQRAH 472
           ARK+RFF++Q+ KA   VP++ +  K   + LD++E  L   E E VE+NAN+D+LQR++
Sbjct: 74  ARKIRFFRDQMSKA--GVPAKEMQGKENDIDLDDVEVKLGELEAELVEINANNDKLQRSY 131

Query: 473 SELSELSLLLDCAGKFFDSARRAA 544
           +EL E  L+L  AG+FF SA R+A
Sbjct: 132 NELMEYKLVLQKAGEFFSSAHRSA 155

>emb|CAD27718.1| putative vacuolar ATPase subunit 100 kDa subunit [Mesembryanthemum
           crystallinum]
          Length = 816

 Score =  149 bits (375), Expect = 4e-35
 Identities = 75/144 (52%), Positives = 108/144 (74%)
 Frame = +2

Query: 113 IDLWRSEEMQLVQLMIPADNAHDTVEALGEIGLLQFKDLNVDKSAFQRTYANQVRRCDEM 292
           +DL RSE MQLVQL++P +++H TV  LG++GL+QFKDLN DKS FQRTYANQ+++  EM
Sbjct: 10  MDLMRSEPMQLVQLIVPLESSHLTVSYLGDLGLVQFKDLNADKSPFQRTYANQIKKSGEM 69

Query: 293 ARKLRFFKEQIEKAHIPVPSRSLLDKRASVTLDELESLLEAAEREAVEMNANHDRLQRAH 472
           AR+LR+F+EQ+  A I +P  ++   +  + +D+LE  L   E E  EMNAN+++LQRA+
Sbjct: 70  ARRLRYFREQMLNAGISIP--AMTSNKNDIKVDDLEVKLAELESELSEMNANNEKLQRAY 127

Query: 473 SELSELSLLLDCAGKFFDSARRAA 544
           +EL E  L+L  +G+FF SA+R+A
Sbjct: 128 NELVEYKLVLQKSGEFFYSAQRSA 151



EST assemble image


clone accession position
1 MXL092f04_r BP098389 1 343
2 MXL022b12_r BP094375 17 232
3 HCL007h11_r AV639960 26 311
4 CL47h07_r AV395709 26 430
5 MXL093b07_r BP098428 36 359
6 LCL005h10_r AV626290 323 641




Chlamydomonas reinhardtii
Kazusa DNA Research Institute