KCC000609A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000609A_C01 KCC000609A_c01
ggtacgtggttcttacatcaccccagcgtccTTCAACTCTTCGAGCATATCTGCCTGGTC
CGATACGGGTGCACTTTACTGCACCACCCCATACATTCTCTTACCATCCTTGCTCGCGAT
TCACTCCGTCGTCTGACAAAGCTGCAGCTGTGCCAGCGACTTCCGGTTACGTCGAGTCCA
TGATTCCCTCGTCCCACACGCGACTTGCATGCTGACCAACTGAACTGTACATCTGTCAAT
GCGCGCAATCCATGTGAGACTTGATCTGTCCGGTCTTATCATGTTGCTGTCGCAAAGCCT
GTCCTATAATTCCTCCATCAACACGCACCACACTCAACAACCTCAACAAAACAGACGTGG
GATAAGCACTCTTGGGCCACCGAACTGCTACCGAACACACCTGCCCGTTGCTAACCGAAG
CGGCGGGCAAGCTGTAGCCAGCGCTGTGTACACAATGTTGATGTGAGTGCTTATACCGAT
ATGTGaaagggcatgtgaggcaagccgccgcgcccaacttattcataaagtacagacaat
tgattgccggcgctggatgcagccg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000609A_C01 KCC000609A_c01
         (565 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E84918 hypothetical protein At2g47700 [imported] - Arabidop...    33  2.0
emb|CAD70165.1| calcium-dependent protein kinase [Spirodela punc...    33  3.5
emb|CAD21241.1| hypothetical protein [Neurospora crassa]               32  5.9
ref|XP_327966.1| predicted protein [Neurospora crassa] gi|289180...    32  5.9
emb|CAB53357.1| nucleoporin CAN [Xenopus laevis]                       32  5.9

>pir||E84918 hypothetical protein At2g47700 [imported] - Arabidopsis thaliana
          Length = 324

 Score = 33.5 bits (75), Expect = 2.0
 Identities = 20/53 (37%), Positives = 30/53 (55%)
 Frame = -1

Query: 460 QHCVHSAGYSLPAASVSNGQVCSVAVRWPKSAYPTSVLLRLLSVVRVDGGIIG 302
           Q+  HS  +SLPAA V +G+V S A R    A+P     R+   + ++ GI+G
Sbjct: 226 QYHHHSPSFSLPAAHVVDGEVDSSAARGLPYAHPFLFSHRVFYNILLELGIVG 278

>emb|CAD70165.1| calcium-dependent protein kinase [Spirodela punctata]
          Length = 548

 Score = 32.7 bits (73), Expect = 3.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 323 THHTQQPQQNRRGISTLGPPNCYRTHLPVANRSGGQAVASA 445
           THHTQQ QQ+    ++   P+  + HLP    S   AV++A
Sbjct: 44  THHTQQRQQSDHQSASQAAPSPAKQHLPSPRNSPAAAVSAA 84

>emb|CAD21241.1| hypothetical protein [Neurospora crassa]
          Length = 697

 Score = 32.0 bits (71), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (45%)
 Frame = +3

Query: 9   VLTSPQRPSTLRAYLPGPIRVHFTAPPHTFSYHPCSRFTPSSDKAAAVPATS 164
           V + P+ P+ LRA   GP      APP   S  P +R  P +    + P TS
Sbjct: 406 VKSPPRGPAALRAPPTGPAAARNLAPPAAPSASPATRHPPQTPSGPSRPDTS 457

>ref|XP_327966.1| predicted protein [Neurospora crassa] gi|28918058|gb|EAA27740.1|
           predicted protein [Neurospora crassa]
          Length = 763

 Score = 32.0 bits (71), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (45%)
 Frame = +3

Query: 9   VLTSPQRPSTLRAYLPGPIRVHFTAPPHTFSYHPCSRFTPSSDKAAAVPATS 164
           V + P+ P+ LRA   GP      APP   S  P +R  P +    + P TS
Sbjct: 472 VKSPPRGPAALRAPPTGPAAARNLAPPAAPSASPATRHPPQTPSGPSRPDTS 523

>emb|CAB53357.1| nucleoporin CAN [Xenopus laevis]
          Length = 2037

 Score = 32.0 bits (71), Expect = 5.9
 Identities = 28/101 (27%), Positives = 42/101 (40%)
 Frame = +3

Query: 30  PSTLRAYLPGPIRVHFTAPPHTFSYHPCSRFTPSSDKAAAVPATSGYVESMIPSSHTRLA 209
           PST++  L        T PP T S      FTP+S   A VP  S    ++IPS   + +
Sbjct: 593 PSTVKVNLKDKFNASDTPPPATISSAAALSFTPTSKPNATVPVKS--QPTVIPS---QAS 647

Query: 210 C*PTELYICQCAQSM*DLICPVLSCCCRKACPIIPPSTRTT 332
             P   +  +  Q+       V     +K   + PP+T+ T
Sbjct: 648 VQPNRPFAVEAPQAP----SSVSIASVQKTVRVNPPATKIT 684



EST assemble image


clone accession position
1 CL47f12_r AV395712 1 475
2 LCL017b09_r AV626878 1 268
3 CL69f12_r AV396786 32 565




Chlamydomonas reinhardtii
Kazusa DNA Research Institute