KCC000595A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000595A_C01 KCC000595A_c01
gcaccagtccacctacggcggcaacccactggcagccaaggtggccatggctgcgctgca
ggtgctgcaggacgagaggcTGGCTGAGAACAGCGACCGACTCGGCGGCATCCTGCGCGA
CCGCCTGGCCGCCATCCCCTCTAAGATGGTCAAGTCGGTCCGAGGCAAGGGCCTGCTGGA
CGCGCTGGTCATCGACGAATCTCACGGCGTGTCCGCCTACGACGTGTGCATGCGGCTGAG
GGACAACGGACTGCTGGCCAAACCCACACAGAAGAACATCATTCGCTTCGCGCCGCCGCT
GGTAATGACGGAGCCGCAGCTTAATGAGTGTGTGGACATCATCCAGCACACGATCACCTC
TTTTGGCGTGTAGTCGCACACAGGTAGAGACGTAGGTGCTAGAGAACATTACATGGGTGC
GCAAATGGGGTTGCGGTGCCATCAGGCCCAGCAAGCCGTGTGCCAGTGATGCGGTCGGCC
ATTGTTTGTTGGCCCTTCATAAGACAGCATGCAACTGGGTCCACGCCAGTGTGGCTCAAG
AGTCCAAGACTGGGAGATGAGAGCTGATGAGTGCGTGTCATTGCACGAGGGGGAGCATCA
CTGCCATATACAGTCTGCATACCAATGCGAGGACATGGGAGAAAGGTAAGGCGGAAGGGT
AACCCAGCTTTGCGCTGCGGTGTGTAAACGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000595A_C01 KCC000595A_c01
         (691 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed W...   150  2e-35
ref|NP_000265.1| ornithine aminotransferase precursor; Ornithine...   150  2e-35
gb|AAB35211.1| ornithine aminotransferase, OAT [human, gyrate at...   150  2e-35
ref|NP_058674.1| ornithine aminotransferase [Mus musculus] gi|26...   148  7e-35
gb|AAA42061.1| ornithine aminotransferase                             147  1e-34

>pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
           Neurotoxin Gabaculine gi|3319073|pdb|1GBN|B Chain B,
           Human Ornithine Aminotransferase Complexed With The
           Neurotoxin Gabaculine gi|3319074|pdb|1GBN|C Chain C,
           Human Ornithine Aminotransferase Complexed With The
           Neurotoxin Gabaculine gi|3319078|pdb|2CAN|A Chain A,
           Human Ornithine Aminotransferase Complexed With
           L-Canaline gi|3319079|pdb|2CAN|B Chain B, Human
           Ornithine Aminotransferase Complexed With L-Canaline
           gi|3319080|pdb|2CAN|C Chain C, Human Ornithine
           Aminotransferase Complexed With L-Canaline
          Length = 402

 Score =  150 bits (378), Expect = 2e-35
 Identities = 75/121 (61%), Positives = 96/121 (78%)
 Frame = +2

Query: 2   HQSTYGGNPLAAKVAMAALQVLQDERLAENSDRLGGILRDRLAAIPSKMVKSVRGKGLLD 181
           H STYGGNPL  +VA+AAL+VL++E LAEN+D+LG ILR+ L  +PS +V +VRGKGLL+
Sbjct: 282 HGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLN 341

Query: 182 ALVIDESHGVSAYDVCMRLRDNGLLAKPTQKNIIRFAPPLVMTEPQLNECVDIIQHTITS 361
           A+VI E+    A+ VC+RLRDNGLLAKPT  +IIRFAPPLV+ E +L E ++II  TI S
Sbjct: 342 AIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 401

Query: 362 F 364
           F
Sbjct: 402 F 402

>ref|NP_000265.1| ornithine aminotransferase precursor; Ornithine aminotransferase
           [Homo sapiens] gi|129018|sp|P04181|OAT_HUMAN Ornithine
           aminotransferase, mitochondrial precursor
           (Ornithine--oxo-acid aminotransferase)
           gi|66645|pir||XNHUO ornithine-oxo-acid transaminase (EC
           2.6.1.13) precursor [validated] - human
           gi|3114488|pdb|1OAT|A Chain A, Ornithine
           Aminotransferase gi|3114489|pdb|1OAT|B Chain B,
           Ornithine Aminotransferase gi|3114490|pdb|1OAT|C Chain
           C, Ornithine Aminotransferase gi|4139654|pdb|2OAT|A
           Chain A, Ornithine Aminotransferase Complexed With
           5-Fluoromethylornithine gi|4139655|pdb|2OAT|B Chain B,
           Ornithine Aminotransferase Complexed With
           5-Fluoromethylornithine gi|4139656|pdb|2OAT|C Chain C,
           Ornithine Aminotransferase Complexed With
           5-Fluoromethylornithine gi|34138|emb|CAA68809.1| unnamed
           protein product [Homo sapiens] gi|189329|gb|AAA59956.1|
           ornithine aminotransferase gi|189348|gb|AAA36386.1|
           ornithine-delta-aminotransferase
           gi|189351|gb|AAA59959.1| ornithine aminotransferase
           gi|386987|gb|AAA59957.1| ornithine aminotransferase
           gi|12654287|gb|AAH00964.1| Ornithine aminotransferase
           precursor [Homo sapiens] gi|16877350|gb|AAH16928.1|
           Ornithine aminotransferase precursor [Homo sapiens]
          Length = 439

 Score =  150 bits (378), Expect = 2e-35
 Identities = 75/121 (61%), Positives = 96/121 (78%)
 Frame = +2

Query: 2   HQSTYGGNPLAAKVAMAALQVLQDERLAENSDRLGGILRDRLAAIPSKMVKSVRGKGLLD 181
           H STYGGNPL  +VA+AAL+VL++E LAEN+D+LG ILR+ L  +PS +V +VRGKGLL+
Sbjct: 319 HGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLN 378

Query: 182 ALVIDESHGVSAYDVCMRLRDNGLLAKPTQKNIIRFAPPLVMTEPQLNECVDIIQHTITS 361
           A+VI E+    A+ VC+RLRDNGLLAKPT  +IIRFAPPLV+ E +L E ++II  TI S
Sbjct: 379 AIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438

Query: 362 F 364
           F
Sbjct: 439 F 439

>gb|AAB35211.1| ornithine aminotransferase, OAT [human, gyrate atrophy of the
           choroid and retina (GACR) patient, Peptide Mutant, 439
           aa]
          Length = 439

 Score =  150 bits (378), Expect = 2e-35
 Identities = 75/121 (61%), Positives = 96/121 (78%)
 Frame = +2

Query: 2   HQSTYGGNPLAAKVAMAALQVLQDERLAENSDRLGGILRDRLAAIPSKMVKSVRGKGLLD 181
           H STYGGNPL  +VA+AAL+VL++E LAEN+D+LG ILR+ L  +PS +V +VRGKGLL+
Sbjct: 319 HGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLN 378

Query: 182 ALVIDESHGVSAYDVCMRLRDNGLLAKPTQKNIIRFAPPLVMTEPQLNECVDIIQHTITS 361
           A+VI E+    A+ VC+RLRDNGLLAKPT  +IIRFAPPLV+ E +L E ++II  TI S
Sbjct: 379 AIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438

Query: 362 F 364
           F
Sbjct: 439 F 439

>ref|NP_058674.1| ornithine aminotransferase [Mus musculus]
           gi|266683|sp|P29758|OAT_MOUSE Ornithine
           aminotransferase, mitochondrial precursor
           (Ornithine--oxo-acid aminotransferase)
           gi|66647|pir||XNMSO ornithine-oxo-acid transaminase (EC
           2.6.1.13) precursor - mouse gi|53459|emb|CAA46049.1|
           ornithine--oxo-acid aminotransferase [Mus musculus]
           gi|14198116|gb|AAH08119.1| Oat protein [Mus musculus]
          Length = 439

 Score =  148 bits (374), Expect = 7e-35
 Identities = 73/121 (60%), Positives = 94/121 (77%)
 Frame = +2

Query: 2   HQSTYGGNPLAAKVAMAALQVLQDERLAENSDRLGGILRDRLAAIPSKMVKSVRGKGLLD 181
           H STYGGNPL  ++A+AAL+VL++E LAEN+D++G ILR  L  +PS +V SVRGKGLL+
Sbjct: 319 HGSTYGGNPLGCRIAIAALEVLEEENLAENADKMGAILRKELMKLPSDVVTSVRGKGLLN 378

Query: 182 ALVIDESHGVSAYDVCMRLRDNGLLAKPTQKNIIRFAPPLVMTEPQLNECVDIIQHTITS 361
           A+VI E+    A+ VC+RLRDNGLLAKPT  +IIR APPLV+ E ++ E V+II  TI S
Sbjct: 379 AIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTILS 438

Query: 362 F 364
           F
Sbjct: 439 F 439

>gb|AAA42061.1| ornithine aminotransferase
          Length = 223

 Score =  147 bits (371), Expect = 1e-34
 Identities = 72/121 (59%), Positives = 94/121 (77%)
 Frame = +2

Query: 2   HQSTYGGNPLAAKVAMAALQVLQDERLAENSDRLGGILRDRLAAIPSKMVKSVRGKGLLD 181
           H STYGGNPL  ++A+AAL+VL++E LAEN+D++G ILR  L  +PS +V +VRGKGLL+
Sbjct: 103 HGSTYGGNPLGCRIAIAALEVLEEEHLAENADKMGAILRKELMKLPSDVVTAVRGKGLLN 162

Query: 182 ALVIDESHGVSAYDVCMRLRDNGLLAKPTQKNIIRFAPPLVMTEPQLNECVDIIQHTITS 361
           A+VI E+    A+ VC+RLRDNGLLAKPT  +IIR APPLV+ E ++ E V+II  TI S
Sbjct: 163 AIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTILS 222

Query: 362 F 364
           F
Sbjct: 223 F 223



EST assemble image


clone accession position
1 CM015e11_r AV387427 1 590
2 CL46a09_r AV395651 213 691




Chlamydomonas reinhardtii
Kazusa DNA Research Institute