Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000589A_C01 KCC000589A_c01
(582 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085449.1| hypothetical protein [Frankia sp. CpI1] gi|1343... 44 0.002
gb|AAB96638.1| precollagen D [Mytilus edulis] 32 0.026
emb|CAA08759.1| AIRE [Homo sapiens] 40 0.031
sp|O75962|TRIO_HUMAN Triple functional domain protein (PTPRF int... 39 0.040
ref|NP_769368.1| blr2728 [Bradyrhizobium japonicum] gi|27350984|... 39 0.053
>ref|NP_085449.1| hypothetical protein [Frankia sp. CpI1] gi|13432084|gb|AAK20165.1|
hypothetical protein [Frankia sp. CpI1]
Length = 353
Score = 43.5 bits (101), Expect = 0.002
Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 21/195 (10%)
Frame = +3
Query: 21 TLAAGPRVASPASLISALQAVCLPAQLCYLTLTHIEALDPSAVTALARGCPHLTS----L 188
T A P +S ++A A P Y PS GCP TS +
Sbjct: 144 TSTASPATSSVIGSVAASSARSRPVSPPYT---------PSGAYGTVTGCPSTTSTTGTI 194
Query: 189 RIYHHTPSSSKSIGTCRTAPATSSASTTGTTS--AQGPDVAAAAPGGNIATGGVHGLGAR 362
H+ + ++ T R AP T++ ST +S + +A+A N A HG GA
Sbjct: 195 ASAAHSARTGQAAHTRRAAPTTTAPSTPAASSWPSSPASSSASAASANRAGQSAHGRGA- 253
Query: 363 LFGRPRTSLASSGTD------------ATNSSWGWRLSGLTFAALAN--CR-RLRELAVH 497
P T+ ++GTD A S+W +G+ A +A CR R R A
Sbjct: 254 ----PSTTARNTGTDHDGNASNSYGSTARISAW----TGIVGAVIATRPCRSRSRPSAAA 305
Query: 498 DHVPPEALLRPPGLP 542
H P A G P
Sbjct: 306 PHPGPAATSATTGHP 320
>gb|AAB96638.1| precollagen D [Mytilus edulis]
Length = 922
Score = 32.3 bits (72), Expect(2) = 0.026
Identities = 25/73 (34%), Positives = 29/73 (39%)
Frame = +3
Query: 228 GTCRTAPATSSASTTGTTSAQGPDVAAAAPGGNIATGGVHGLGARLFGRPRTSLASSGTD 407
GT AP +A+T G + GP A A GGN A G G+G G L G
Sbjct: 691 GTGGPAPGVGAAATAGAFAGAGPGGANA--GGNAAAGAGPGVGPGGLG----GLGGLGAG 744
Query: 408 ATNSSWGWRLSGL 446
G L GL
Sbjct: 745 GLGGGLGGGLGGL 757
Score = 26.6 bits (57), Expect(2) = 0.026
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 482 GAGSARSRATGGAAAAARLAAGCAA 556
GAG+ + GG +AAAR AA AA
Sbjct: 795 GAGAGGAGGNGGGSAAARAAAQAAA 819
>emb|CAA08759.1| AIRE [Homo sapiens]
Length = 515
Score = 39.7 bits (91), Expect = 0.031
Identities = 33/111 (29%), Positives = 46/111 (40%), Gaps = 4/111 (3%)
Frame = -3
Query: 373 RPKSRAPRPCTPPVAM-LPPGAAAA---TSGPCALVVPVVDALLVAGAVLQVPMLLLLLG 206
+P++ PRP PPV LPPG +A GP + +D LV + P L G
Sbjct: 349 QPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPG 408
Query: 205 VWW*IRREVRCGQPRASAVTALGSSASMWVSVR*HSCAGRHTACSAEIKLA 53
+ + C P A G+ +W +R SC+G T E LA
Sbjct: 409 LDSSALHPLLCVGPEGQQNLAPGARCGVWTGLRCRSCSGDVTPAPVEGVLA 459
>sp|O75962|TRIO_HUMAN Triple functional domain protein (PTPRF interacting protein)
gi|3644048|gb|AAC43042.1| Trio isoform [Homo sapiens]
Length = 3038
Score = 39.3 bits (90), Expect = 0.040
Identities = 27/86 (31%), Positives = 35/86 (40%)
Frame = -3
Query: 553 SASGGKPGGRSSASGGT*SCTASSRSRRQLASAANVRPLSRHPHELLVASVPDDAREVRG 374
S GG P G S SGG SC + + R S +P+ HP +LV+S E
Sbjct: 2249 SGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRI-PQPVRHHP-PVLVSSAASSQAEADK 2306
Query: 373 RPKSRAPRPCTPPVAMLPPGAAAATS 296
+ P P PP P +A S
Sbjct: 2307 MSGTSTPGPSLPPPGAAPEAGPSAPS 2332
>ref|NP_769368.1| blr2728 [Bradyrhizobium japonicum] gi|27350984|dbj|BAC47993.1|
blr2728 [Bradyrhizobium japonicum USDA 110]
Length = 519
Score = 38.9 bits (89), Expect = 0.053
Identities = 30/90 (33%), Positives = 47/90 (51%), Gaps = 5/90 (5%)
Frame = +3
Query: 210 SSSKSIGTCRTAPATSSASTTGTTSAQGPDVAAAAPGGNIATGGVH-GLGARL----FGR 374
SS +S+ + AT+ S G +S+ GP+ AAA G++A+GG+ LG R F
Sbjct: 71 SSIQSVACGTNSSATTGGSAFGESSSAGPE-AAAFGAGSLASGGLSTALGYRSTASGFFS 129
Query: 375 PRTSLASSGTDATNSSWGWRLSGLTFAALA 464
AS+ T A S++G++ S + A A
Sbjct: 130 TAAGSASAATGALTSAFGYQSSASGYTATA 159
