KCC000586A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000586A_C01 KCC000586A_c01
tatagattagCGCGGCCGAACGCGCACTTTGACGACTCGCCCAAATTTTCATGGGAGTGG
ACCTGCCCTCTGCCCTGAGTTCAACCAATTGTCGACGCTCTTTCCGGGCTAGGCTTTGGC
GAGCATGAACTAGCTGGCAGCGCCTTTTGTTTGTTAGAAGCGGACCAAGCGGCATGCCTC
ACTGTTCGACAGCGGTTAGCGCTAAAAGCTGCCATTCAAGCTGTGGCGGCTGGCCTCGGC
GTGGGGAGCGCGGCTGGAGCTGGCAATGATGAGCAGCGTTCTGCTGCGCAGCTGCTCCGC
TCGCCACTGCCTGACAGCGACGTGCATCCTGTGACGTGGAAGGCAGCCCACACCAGCGGC
CAGATATACGAGATGAAGGCAGACGACGTGCAGCACTGGGAGTACGTTCAGCCGGAGCAG
GAGGCAGCCGGCAGCGGTGAGGGCGGTGCCTGCAGTGGCAATGCTGGCAATGGTCAGCAG
CTGCTGGTTGATGCCATCCGTGACCACCAGGACCAGGCGGACGAGCTGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000586A_C01 KCC000586A_c01
         (530 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_743406.1| conserved domain protein [Pseudomonas putida KT...    40  0.019
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    37  0.16
dbj|BAA06974.1| ORF2 [Desulfovibrio vulgaris]                          37  0.16
dbj|BAC03649.1| unnamed protein product [Homo sapiens]                 36  0.27
ref|NP_508292.1| putative protein family member (XC177) [Caenorh...    36  0.27

>ref|NP_743406.1| conserved domain protein [Pseudomonas putida KT2440]
           gi|24982696|gb|AAN66870.1|AE016315_6 conserved domain
           protein [Pseudomonas putida KT2440]
          Length = 619

 Score = 40.0 bits (92), Expect = 0.019
 Identities = 34/94 (36%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
 Frame = -1

Query: 350 WAAFHVTGCTSLSGSGERSSC-----AAERCSSLPAPAALPTPRPA-ATA*MAAFSANRC 189
           W A    G    SGSG  S+      AA   ++ PAPAA PTP PA A A   A +A   
Sbjct: 86  WKAVDAKGNLYASGSGNASNLGLVTLAAAPATAAPAPAAAPTPTPAPAPAPAPAPAAAAA 145

Query: 188 RTVRHAAWSASNKQKA-----LPASSCSPKPSPE 102
             V  AA + +    A      PA +  P P+PE
Sbjct: 146 PAVVEAAPAQAKPAPAPAPAPAPAVAAEPAPAPE 179

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 37.0 bits (84), Expect = 0.16
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
 Frame = -1

Query: 449 APPSPLPAASCSG*TYSQCCTSSAFISYIWPLVWAAFHVTG---CTSLSGSGERSSCAAE 279
           AP +P P A   G  +     SSA         W +F  T    CT+      R++ +  
Sbjct: 122 APAAPSPPARAFG-PWRSSTRSSARSPQSPTAGWRSFAPTPRRPCTAADSGTRRTAASGT 180

Query: 278 RCSSLPAPAALPTPRPAATA*MAAFSAN-RCRTVRHA----AWSASNKQKALPASSCSPK 114
           RC   P+      P P A +  +A S     RT R A    + SAS   +A P  +CS +
Sbjct: 181 RCRGTPSGTRCSAPAPCAASPASARSPPVSPRTARSASRPSSRSASAPSRASP-RTCSCR 239

Query: 113 PSPERASTI 87
           P P R+ST+
Sbjct: 240 P-PPRSSTV 247

>dbj|BAA06974.1| ORF2 [Desulfovibrio vulgaris]
          Length = 191

 Score = 37.0 bits (84), Expect = 0.16
 Identities = 32/106 (30%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
 Frame = -2

Query: 526 ARPPGPGGHGWHQPAAADHCQHCHCRHRPHRCRLPPAP----AERTPSAARRLPSSRIS- 362
           A   G  GH  H PA A   Q  H  H       PPA       R P A+   P SR   
Sbjct: 86  AAQDGGAGHAGHPPADAAPAQDSHAGHGAAETAQPPAETCTRCPRPPRASWGNPVSRFRR 145

Query: 361 -GRWCGLPSTSQDARRCQAVASGAAAQQNAAHHCQLQPRSPRRGQP 227
             R   LP+  Q     QA+ S +A     A  C     +P    P
Sbjct: 146 FSRGRALPAIHQPRLPLQALTSVSATSSPRAFCCATSRAAPSTRAP 191

>dbj|BAC03649.1| unnamed protein product [Homo sapiens]
          Length = 201

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = -1

Query: 320 SLSGSGERSSCAAERCSSLPA-----PAALPTPRPAATA*MAAFSANRCRTVRHAA-WSA 159
           +L G G  S C    C  LP      P   P  RPAAT+ +   + +  R  + +  WS 
Sbjct: 55  ALRGPGGPSRCTLH-CPGLPPTDESQPGRYPRRRPAATSRLLRLAPSFVRLTKLSGRWSE 113

Query: 158 SNKQKALPASSCSPKPSPERA 96
           + KQ A P  S SP P  E++
Sbjct: 114 TPKQGARPPYSASPGPFGEQS 134

>ref|NP_508292.1| putative protein family member (XC177) [Caenorhabditis elegans]
            gi|7505357|pir||T34434 hypothetical protein K06A9.1a -
            Caenorhabditis elegans gi|3834294|gb|AAC70890.1|
            Hypothetical protein K06A9.1b [Caenorhabditis elegans]
          Length = 2232

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
 Frame = -1

Query: 332  TGCTSLSGSGERSSCAAERCSSLPAPAALPTPRPAATA*MAAFSANRCRTVRHAAWSASN 153
            +G T   GS E S+  +   SS PAP+    P P+ ++      ++      + + S S 
Sbjct: 824  SGSTVTVGSTEASTSGSSVASSSPAPSTSQNPNPSTSS-----GSSMITQSPYPSQSTSP 878

Query: 152  KQKALPASSCSP-------KPSPERASTIG*TQG 72
             + +   S  SP        PSP +++TIG TQG
Sbjct: 879  VESSTTPSPGSPGTTLTSTSPSPSQSTTIGSTQG 912



EST assemble image


clone accession position
1 LCL030h01_r AV627705 1 342
2 CL44g07_r AV395582 11 530




Chlamydomonas reinhardtii
Kazusa DNA Research Institute