Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000504A_C01 KCC000504A_c01
(838 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46228|RS1_SYNP6 30S ribosomal protein S1 gi|1075612|pir||S51... 110 4e-23
ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus e... 108 8e-23
ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC... 107 2e-22
ref|NP_895495.1| 30S ribosomal protein S1, homolog A [Prochloroc... 105 7e-22
ref|ZP_00072155.1| COG0539: Ribosomal protein S1 [Trichodesmium ... 105 7e-22
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 gi|1075612|pir||S51485 ribosomal protein
S1 - Synechococcus sp. (PCC 6301)
gi|666973|dbj|BAA05946.1| ribosomal protein S1
[Synechococcus sp.]
Length = 307
Score = 110 bits (274), Expect = 4e-23
Identities = 55/130 (42%), Positives = 79/130 (60%)
Frame = +1
Query: 448 YEEVEEMLEAVDYEFKVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFARLKTPLE 627
+E+ +L+ DY F GD V GTV ++ GA ++IGAK AF PV E S R+++P E
Sbjct: 15 HEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFFPVQEMSINRVESPEE 74
Query: 628 ALRPGMKRDFMVVEDEEEYGQVIVSLAAMEATTFWQRIRQLQEEDITVTVSVESVNKGGM 807
L+P R+F ++ DE E GQ+ +S+ +E W+R+RQLQ ED TV V + N+GG
Sbjct: 75 VLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGA 134
Query: 808 LVKFGIYDGF 837
LV+ GF
Sbjct: 135 LVRIEGLRGF 144
>ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1
[Thermosynechococcus elongatus BP-1]
Length = 330
Score = 108 bits (271), Expect = 8e-23
Identities = 58/152 (38%), Positives = 85/152 (55%)
Frame = +1
Query: 382 QEEDLDEMVDYDDFGDEEYADMYEEVEEMLEAVDYEFKVGDKVSGTVIEVDDDGAYVEIG 561
QE+ LD + DF +L+ DY F GD V+GTV ++ GA ++IG
Sbjct: 4 QEKTLDVGFTHADFA------------ALLDRYDYHFNPGDIVAGTVFSIEPKGALIDIG 51
Query: 562 AKAIAFCPVTECSFARLKTPLEALRPGMKRDFMVVEDEEEYGQVIVSLAAMEATTFWQRI 741
AK A+ P+ E S R+++P E L+P R+F ++ DE E GQ+ +S+ +E W+R+
Sbjct: 52 AKTAAYIPIQEMSINRIESPEEVLQPNETREFFILADENEEGQLTLSIRRIEYMRAWERV 111
Query: 742 RQLQEEDITVTVSVESVNKGGMLVKFGIYDGF 837
RQLQ ED TV V + N+GG LV+ GF
Sbjct: 112 RQLQAEDATVRSQVFATNRGGALVRIEGLRGF 143
Score = 33.1 bits (74), Expect = 5.8
Identities = 19/77 (24%), Positives = 39/77 (49%)
Frame = +1
Query: 487 EFKVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFARLKTPLEALRPGMKRDFMVV 666
+ +VG+ V GTV + GA+++IG + ++E S + TP + M++
Sbjct: 192 KLEVGEVVVGTVRGIKPYGAFIDIGGVS-GLLHISEISHDHIDTPHSVFNVNDQVKVMII 250
Query: 667 EDEEEYGQVIVSLAAME 717
+ + E G++ +S +E
Sbjct: 251 DLDAERGRISLSTKQLE 267
>ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500385|sp|P73530|RS1A_SYNY3 30S ribosomal protein S1
homolog A gi|7447089|pir||S77236 ribosomal protein S1 -
Synechocystis sp. (strain PCC 6803)
gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1
[Synechocystis sp. PCC 6803]
Length = 328
Score = 107 bits (267), Expect = 2e-22
Identities = 53/129 (41%), Positives = 78/129 (60%)
Frame = +1
Query: 451 EEVEEMLEAVDYEFKVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFARLKTPLEA 630
E+ +L+ DY F GD V+GTV ++ GA ++IGAK A+ P+ E S R+ P E
Sbjct: 15 EDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEV 74
Query: 631 LRPGMKRDFMVVEDEEEYGQVIVSLAAMEATTFWQRIRQLQEEDITVTVSVESVNKGGML 810
L+P R+F ++ DE E GQ+ +S+ +E W+R+RQLQ ED TV +V + N+GG L
Sbjct: 75 LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGAL 134
Query: 811 VKFGIYDGF 837
V+ GF
Sbjct: 135 VRIEGLRGF 143
>ref|NP_895495.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
MIT 9313] gi|33635519|emb|CAE21843.1| 30S ribosomal
protein S1, homolog A [Prochlorococcus marinus str. MIT
9313]
Length = 367
Score = 105 bits (263), Expect = 7e-22
Identities = 65/198 (32%), Positives = 102/198 (50%)
Frame = +1
Query: 244 EQPVEAALDPASILDVDPAAVEEMDLHELDQAQEDLLKWMMLDEATQEEDLDEMVDYDDF 423
EQ ++A D S V E + + A+EDL + ++ +D +D
Sbjct: 7 EQVQDSAADSTSSEQVINTTSETAEAAKQALAEEDL---SIPEDVPTADDPSSRAAKNDL 63
Query: 424 GDEEYADMYEEVEEMLEAVDYEFKVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSF 603
+ +E +L DY FK GD V+GTV ++ GA ++IGAK AF P+ E S
Sbjct: 64 SGAGFT--LDEFASLLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPLQEVSI 121
Query: 604 ARLKTPLEALRPGMKRDFMVVEDEEEYGQVIVSLAAMEATTFWQRIRQLQEEDITVTVSV 783
R++ + L PG R+F ++ +E E GQ+ +S+ +E W+R+RQLQ+ED T+ V
Sbjct: 122 NRVEGLSDVLLPGEIREFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDATIYSEV 181
Query: 784 ESVNKGGMLVKFGIYDGF 837
+ N+GG LV+ GF
Sbjct: 182 FATNRGGALVRVEGLRGF 199
Score = 36.2 bits (82), Expect = 0.69
Identities = 20/75 (26%), Positives = 40/75 (52%)
Frame = +1
Query: 493 KVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFARLKTPLEALRPGMKRDFMVVED 672
+VG+ V G V + GA+++IG + ++E S ++TP L + M+++
Sbjct: 250 EVGEVVIGAVRGIKPYGAFIDIGGVS-GLLHISEISHEHIETPHSVLNVNDQMKVMIIDL 308
Query: 673 EEEYGQVIVSLAAME 717
+ E G++ +S A+E
Sbjct: 309 DAERGRISLSTKALE 323
>ref|ZP_00072155.1| COG0539: Ribosomal protein S1 [Trichodesmium erythraeum IMS101]
Length = 390
Score = 105 bits (263), Expect = 7e-22
Identities = 53/136 (38%), Positives = 80/136 (57%)
Frame = +1
Query: 430 EEYADMYEEVEEMLEAVDYEFKVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFAR 609
+E +E+ +L+ DY F GD V+GTV ++ GA ++IGAK A+ P+ E S R
Sbjct: 9 KEVGFTHEDFAALLDKYDYHFSPGDIVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINR 68
Query: 610 LKTPLEALRPGMKRDFMVVEDEEEYGQVIVSLAAMEATTFWQRIRQLQEEDITVTVSVES 789
++ P E L+ R+F ++ DE E GQ+ +S+ +E W+R+RQLQ ED TV V +
Sbjct: 69 VENPEEVLQSNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFA 128
Query: 790 VNKGGMLVKFGIYDGF 837
N+GG LV+ GF
Sbjct: 129 TNRGGALVRIEGLRGF 144
Score = 33.5 bits (75), Expect = 4.4
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +1
Query: 493 KVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFARLKTPLEALRPGMKRDFMVVED 672
+VG+ V G V + GA+++IG + ++E S ++TP L+ + M+++
Sbjct: 195 EVGEVVIGAVRGIKPYGAFIDIGGVS-GLLHISEISHDHIETPSSVLKVNDELKVMIIDL 253
Query: 673 EEEYGQVIVSLAAME 717
+ + G++ +S +E
Sbjct: 254 DADRGRISLSTKQLE 268
