KCC000503A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000503A_C01 KCC000503A_c01
gaagtttttcttgctcctgctacttGTTCATCAAATTACAGTACCACTTGCTTGCGAACA
GTATCCAGCTGCTCGTCAGAACGCATTAAAGTCTCGACAGGATAGTTCTTCGCCTGCTGA
GCCAAAATGTCTACCGAGGTGGTCCTTAAAGTTGACATGATGTGCAACGGATGCGTTGGC
GCTGTCCAACGTGTCCTGGGAAAGCTGGATGGAGTGGACTCGTACGAGGTCAGCTTGGAG
AAGCAGCAGGCTGTTGTGCGTGGCAAGGCGCTGGACCCCCAGGCTGTCCTGGAGAAGGTC
GCCAAGACGGGGAAGAAGGCCGAGCTCGTGTCCTCGTAAAGCGCCATGCGCTGGATCTGT
GCTTTTGCCAGGAGTGGAGTGGAGTGGCGGCCACGGCCACGGCCATGGCGATAGGGTGAA
GGCAACCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000503A_C01 KCC000503A_c01
         (429 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG01446.1|AF280056_1 putative copper chaperone [Chlamydomona...   136  8e-32
ref|NP_191183.1| copper homeostasis factor (copper chaperone) (C...    75  2e-13
ref|NP_564870.1| copper homeostasis factor (copper chaperone) (C...    75  2e-13
gb|AAP06757.1| copper chaperone [Lycopersicon esculentum]              74  4e-13
pir||T50778 copper chaperone homolog CCH [imported] - soybean gi...    70  7e-12

>gb|AAG01446.1|AF280056_1 putative copper chaperone [Chlamydomonas reinhardtii]
           gi|22252712|gb|AAM94017.1| putative copper chaperone
           [Chlamydomonas reinhardtii]
          Length = 70

 Score =  136 bits (342), Expect = 8e-32
 Identities = 70/70 (100%), Positives = 70/70 (100%)
 Frame = +1

Query: 127 MSTEVVLKVDMMCNGCVGAVQRVLGKLDGVDSYEVSLEKQQAVVRGKALDPQAVLEKVAK 306
           MSTEVVLKVDMMCNGCVGAVQRVLGKLDGVDSYEVSLEKQQAVVRGKALDPQAVLEKVAK
Sbjct: 1   MSTEVVLKVDMMCNGCVGAVQRVLGKLDGVDSYEVSLEKQQAVVRGKALDPQAVLEKVAK 60

Query: 307 TGKKAELVSS 336
           TGKKAELVSS
Sbjct: 61  TGKKAELVSS 70

>ref|NP_191183.1| copper homeostasis factor (copper chaperone) (CCH) [Arabidopsis
           thaliana] gi|11290104|pir||T47741 copper homeostasis
           factor [imported] - Arabidopsis thaliana
           gi|3168840|gb|AAC33510.1| copper homeostasis factor
           [Arabidopsis thaliana] gi|7572922|emb|CAB87423.1| copper
           homeostasis factor [Arabidopsis thaliana]
           gi|13605758|gb|AAK32872.1|AF361860_1
           AT3g56240/F18O21_200 [Arabidopsis thaliana]
           gi|17978907|gb|AAL47423.1| AT3g56240/F18O21_200
           [Arabidopsis thaliana] gi|21553785|gb|AAM62878.1| copper
           homeostasis factor [Arabidopsis thaliana]
          Length = 121

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 34/64 (53%), Positives = 51/64 (79%)
 Frame = +1

Query: 127 MSTEVVLKVDMMCNGCVGAVQRVLGKLDGVDSYEVSLEKQQAVVRGKALDPQAVLEKVAK 306
           M+  VVLKV M C GCVGAV RVLGK++GV+S+++ +++Q+  V+G  ++P+AV + V+K
Sbjct: 1   MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGN-VEPEAVFQTVSK 59

Query: 307 TGKK 318
           TGKK
Sbjct: 60  TGKK 63

>ref|NP_564870.1| copper homeostasis factor (copper chaperone) (CCH), putative
           [Arabidopsis thaliana] gi|14532548|gb|AAK64002.1|
           At1g66240/T6J19_6 [Arabidopsis thaliana]
           gi|18655401|gb|AAL76156.1| At1g66240/T6J19_6
           [Arabidopsis thaliana]
          Length = 106

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 36/64 (56%), Positives = 50/64 (77%)
 Frame = +1

Query: 127 MSTEVVLKVDMMCNGCVGAVQRVLGKLDGVDSYEVSLEKQQAVVRGKALDPQAVLEKVAK 306
           MS  VVL+V M C GCVGAV+RVLGK++GV+S++V +++Q+  V+G  + P AVL+ V K
Sbjct: 31  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGN-VQPDAVLQTVTK 89

Query: 307 TGKK 318
           TGKK
Sbjct: 90  TGKK 93

>gb|AAP06757.1| copper chaperone [Lycopersicon esculentum]
          Length = 81

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 35/63 (55%), Positives = 50/63 (78%)
 Frame = +1

Query: 127 MSTEVVLKVDMMCNGCVGAVQRVLGKLDGVDSYEVSLEKQQAVVRGKALDPQAVLEKVAK 306
           MS  VVLKV M C GCVGAV+RVLGK++GV+++++ L++Q+  V+G  + P AVL+ V+K
Sbjct: 1   MSQTVVLKVGMSCEGCVGAVKRVLGKMEGVETFDIDLKEQKVTVKGN-VQPDAVLKTVSK 59

Query: 307 TGK 315
           TGK
Sbjct: 60  TGK 62

>pir||T50778 copper chaperone homolog CCH [imported] - soybean
           gi|6525011|gb|AAF15286.1|AF198627_1 copper chaperone
           homolog CCH [Glycine max]
          Length = 130

 Score = 70.1 bits (170), Expect = 7e-12
 Identities = 32/63 (50%), Positives = 48/63 (75%)
 Frame = +1

Query: 130 STEVVLKVDMMCNGCVGAVQRVLGKLDGVDSYEVSLEKQQAVVRGKALDPQAVLEKVAKT 309
           S  VVLKV M C GC GA+ RVLGK++GV+S+++ L++Q+  V+G  ++P  VL+ V+K+
Sbjct: 3   SQTVVLKVGMSCQGCAGAMNRVLGKMEGVESFDIDLKEQKVTVKGN-VEPDEVLQAVSKS 61

Query: 310 GKK 318
           GKK
Sbjct: 62  GKK 64



EST assemble image


clone accession position
1 LCL098b03_r AV631680 1 358
2 HC087c02_r AV638507 26 429
3 CL35f04_r AV395091 32 398
4 CM017g09_r AV388156 36 613
5 MX066d01_r BP088677 42 306




Chlamydomonas reinhardtii
Kazusa DNA Research Institute