KCC000482A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000482A_C01 KCC000482A_c01
tccaatcaggtgcagcatactttCACATATCTATCTTACTCGGTCCATGTCGTCCAGCAG
CTGTGCGCTACGCGGCCAAAGCGCAGTCTCTTACCAGCTTTCCGTGCGTTCGACAGTGGA
TTATATGCCATACTTGTTTACAATCTGCAATCTATAGAGGAGATGGAGGGAACTTGAGAA
GCGGAGGCAGCGGCGAAGCTGTGGAGTCCTTGAAAGCAAACAGGTCGCTCTCCAGCGATG
TCGACATGCAATAACCTATTTGGCTTTGAGGAATACAATGGCCAGTGCGAATTCTTCGGG
GAGGGCCCTACAGTTCTTCCTGAAGGGCTAGGATGGTTCATCCTTGTCGGCCTCGGCGCG
GTCTTCGCTTGCGTGCCCACGGCCCTCATCTGGATTGGACCGGCGGTTCGGAAACTTTGG
GGCTGACTCGGAGAGCTTCGCCACCGCCGGCCGCAGCATCAGAGCCGGCCTGACCGCCTG
TGACATCGTTGCCAAGTGGACGTGGGACGCCACGCTGCTTCAGTCTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000482A_C01 KCC000482A_c01
         (527 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_199351.1| urea active transporter-related protein [Arabid...    47  1e-10
gb|AAG46170.1|AC018727_22 putative urea active transport protein...    48  2e-09
ref|XP_329657.1| hypothetical protein [Neurospora crassa] gi|289...    45  9e-07
gb|AAA34582.1| Dur3                                                    42  3e-06
ref|NP_011847.1| Urea active transport protein; Dur3p [Saccharom...    42  3e-06

>ref|NP_199351.1| urea active transporter-related protein [Arabidopsis thaliana]
           gi|9758728|dbj|BAB09166.1| urea active transporter-like
           protein [Arabidopsis thaliana]
          Length = 694

 Score = 47.0 bits (110), Expect(2) = 1e-10
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +2

Query: 395 LDRRFGNFGADSESFATAGRSIRAGLTACDIVAKWTWDATLLQS 526
           L++R+      SE F TAGR+++ GL A  IV++WTW AT+LQS
Sbjct: 59  LEKRYVGARHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQS 102

 Score = 40.4 bits (93), Expect(2) = 1e-10
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
 Frame = +1

Query: 238 MSTCNNL-FGFEEYNG------QCEFFGEGPTVLPEGLGWFILVGLGAVFACVPTALIWI 396
           M+TC    F  + Y+G      Q  FFG G TVL +G+G+ +++G GA FA   + L+W+
Sbjct: 1   MATCPPFDFSTKYYDGDGGCQRQSSFFG-GTTVLDQGVGYAVILGFGAFFAVFTSFLVWL 59

>gb|AAG46170.1|AC018727_22 putative urea active transport protein [Oryza sativa]
           gi|31433710|gb|AAP55189.1| putative urea active
           transport protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 721

 Score = 48.1 bits (113), Expect(2) = 2e-09
 Identities = 23/44 (52%), Positives = 31/44 (70%)
 Frame = +2

Query: 395 LDRRFGNFGADSESFATAGRSIRAGLTACDIVAKWTWDATLLQS 526
           L++R+      SE F TAGRS++ GL A  IV++WTW AT+LQS
Sbjct: 64  LEKRYVGSQHTSEWFNTAGRSVKTGLIASVIVSQWTWAATILQS 107

 Score = 34.7 bits (78), Expect(2) = 2e-09
 Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 7/53 (13%)
 Frame = +1

Query: 259 FGFEEY---NGQCE----FFGEGPTVLPEGLGWFILVGLGAVFACVPTALIWI 396
           FG E Y   NG C     +FG  P VL + +G+ +++G GA FA   + L+W+
Sbjct: 13  FGAEYYSVVNGVCSRAGSYFGGRP-VLTQAVGYAVVLGFGAFFALFTSFLVWL 64

>ref|XP_329657.1| hypothetical protein [Neurospora crassa] gi|28919657|gb|EAA29072.1|
           hypothetical protein [Neurospora crassa]
          Length = 704

 Score = 45.4 bits (106), Expect(2) = 9e-07
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = +2

Query: 401 RRFGNFGADSESFATAGRSIRAGLTACDIVAKWTWDATLLQS 526
           +R+      SE F TAGR++++GL    +V+ WTW ATLLQS
Sbjct: 45  KRYNRELQTSEMFNTAGRTVKSGLVGSAVVSSWTWAATLLQS 86

 Score = 28.5 bits (62), Expect(2) = 9e-07
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 301 EGPTVLPEGLGWFILVGLGAVFA 369
           E  T L +G+G+ I++GLGA+FA
Sbjct: 12  ETATALNQGVGYGIVIGLGALFA 34

>gb|AAA34582.1| Dur3
          Length = 735

 Score = 41.6 bits (96), Expect(2) = 3e-06
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 428 SESFATAGRSIRAGLTACDIVAKWTWDATLLQS 526
           +E F TAGRS++  L+ C +V+ W W +TLL S
Sbjct: 45  AEEFTTAGRSVKTRLSGCSVVSSWIWCSTLLTS 77

 Score = 30.8 bits (68), Expect(2) = 3e-06
 Identities = 14/24 (58%), Positives = 18/24 (74%)
 Frame = +1

Query: 298 GEGPTVLPEGLGWFILVGLGAVFA 369
           GE    LP+G G+ I++GLGAVFA
Sbjct: 2   GEFKPPLPQGAGYAIVLGLGAVFA 25

>ref|NP_011847.1| Urea active transport protein; Dur3p [Saccharomyces cerevisiae]
           gi|729376|sp|P33413|DUR3_YEAST Urea active transporter
           gi|630059|pir||S46830 urea transport protein - yeast
           (Saccharomyces cerevisiae) gi|2289886|gb|AAB65069.1|
           Urea active transporter [Saccharomyces cerevisiae]
          Length = 735

 Score = 41.6 bits (96), Expect(2) = 3e-06
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +2

Query: 428 SESFATAGRSIRAGLTACDIVAKWTWDATLLQS 526
           +E F TAGRS++ GL A  +V+ W W +TLL S
Sbjct: 45  AEEFTTAGRSVKTGLVAAAVVSSWIWCSTLLTS 77

 Score = 30.8 bits (68), Expect(2) = 3e-06
 Identities = 14/24 (58%), Positives = 18/24 (74%)
 Frame = +1

Query: 298 GEGPTVLPEGLGWFILVGLGAVFA 369
           GE    LP+G G+ I++GLGAVFA
Sbjct: 2   GEFKPPLPQGAGYAIVLGLGAVFA 25



EST assemble image


clone accession position
1 HCL097d05_r AV645044 1 402
2 MXL058h05_r BP096447 24 468
3 CL33b03_r AV394978 26 527




Chlamydomonas reinhardtii
Kazusa DNA Research Institute